These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1676 fasta sequence [CGACC--ATGGAGGC-GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACC-AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGAACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAAGATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACCATGTCCTATTTGCAATGCTGGTCAGGAGCACGGATTTTACAAGGCAAATCAGATGACCCGTTGCAGTGCATGTCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATGTGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTAAAAAAAAAAAAAAAA] [+] EMBL CB685247 [CGACCCTATGGAGGCGGAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAAGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACGGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGACGGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAACAATTG ] [+] EMBL AU068155 [ GACC ATGGAGGC GGANGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTNTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGG GGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCA ] [+] EMBL AK101705 [ GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACC AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGAACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAAGATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACCATGTCCTATTTGCAATGCTGGTCAGGAGCACGGATTTTACAAGGCAAATCAGATGACCCGTTGCAGTGCATGTCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATGTGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAG ] [+] EMBL AK060608 [ GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAACACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGGCGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACC AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGAACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAAGATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACCATGTCCTATTTGCAATGCTGGTCAGGAGCACGGATTTTACAAGGCAAATCAGATGACCCGTTGCAGTGCATGTCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATGTGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTA ] [+] EMBL CB659151 [ ACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACC AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGAACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAAGATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACCA ] [+] EMBL BP184518 [ CCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACCAAGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATG TGGAACTTTGGAAACTTTCATCGAGGAA ] [+] EMBL CA999700 [ C AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGG ] [+] EMBL BP184519 [ TCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATGTGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAAAAa ] [-] EMBL CB659152 [ TGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAAAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGAAGGAATCAAATCAGTTGTGAAGACTTTCCCTTAAc ] [-] EMBL CB685248 [ TGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTGGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGAAGGAATCAAATCAGTCGTa ] [+] EMBL BQ907889 [ AGCTA CCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATTCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTGATAGTATTACATACGGAGTAAGGCT TGTATAATTATAGC AAACCGAAGATTAAAGAGGGTTGAATAAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAA CTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCGGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTAAAAAAA ] [+] EMBL AU068154 [ TGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATNGGGATGTTTNCATAAGAGATTNTCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTNCATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTAAAAAAAAAAAAAAAA] consensusID : consensus_13809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1114 fasta sequence [GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGGTAGGCGTACTGCCACCGCCTTCGCCGTCCGCCCTCGTTCTCTCCCCGATCCCCCATTTCAGGCTCCGTCTCGTGATCGTCTCACCCTGCCTGCCTCGTTTCGTCGAATTCCGTTCCCTGCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGCCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACCAGCCTTCTCATGATGGCAGAAGGTGAGCACTTCCAATCGAAATCGGGTATTTGCTGATTAGCTGTTATGATCCTGCTGCCGCAAGATCATATAACTAAAATGGGTAGTATGAAGTGTGAACGTGGTAAGAAATTGGGGACCGAAGACGAACATAAGAGAGAGGCGCTGTGTCCATTAAAACGCGTGAGATATCCACCCTACTTGAATCCCAGTTGCTCCTATATGTCCCCTTCTGAACTTGTTTGCGCCTCCTTTTCCCATGCCAGGTACTTGTAAAGGTTCTTAAGAGTAGCCAGCTAGTTGGCAAGCAGTAGCCAGATTATCTCTCATATTTAGCAAGCGGAATGTGCAATATTTTGATTTGGTGTTGCAGTGGCCAGTTGGATAATATTGCGAAACGATATGTCTGCACAAATGGCACAGTCAGGCCAGAAAGATTTTGACAATTTGCTAGCTAATGTAGTGCCAATTACACATACTCAGATTGTAAGTAGGGCCAATTCAGTCATCTTTCTGATTGTAGCCTGATGCATGCCACCTCCTTTTACCAGTTATTGTTGAATAGGTAGTATTCACATGATGGTCAAATAGTGCAGTGATCTT] [+] EMBL AK111481 [GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGGTAGGCGTACTGCCACCGCCTTCGCCGTCCGCCCTCGTTCTCTCCCCGATCCCCCATTTCAGGCTCCGTCTCGTGATCGTCTCACCCTGCCTGCCTCGTTTCGTCGAATTCCGTTCCCTGCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGCCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACCAGCCTTCTCATGATGGCAGAAGGTGAGCACTTCCAATCGAAATCGGGTATTTGCTGATTAGCTGTTATGATCCTGCTGCCGCAAGATCATATAACTAAAATGGGTAGTATGAAGTGTGAACGTGGTAAGAAATTGGGGACCGAAGACGAACATAAGAGAGAGGCGCTGTGTCCATTAAAACGCGTGAGATATCCACCCTACTTGAATCCCAGTTGCTCCTATATGTCCCCTTCTGAACTTGTTTGCGCCTCCTTTTCCCATGCCAGGTACTTGTAAAGGTTCTTAAGAGTAGCCAGCTAGTTGGCAAGCAGTAGCCAGATTATCTCTCATATTTAGCAAGCGGAATGTGCAATATTTTGATTTGGTGTTGCAGTGGCCAGTTGGATAATATTGCGAAACGATATGTCTGCACAAATGGCACAGTCAGGCCAGAAAGATTTTGACAATTTGCTAGCTAATGTAGTGCCAATTACACATACTCAGATTGTAAGTAGGGCCAATTCAGTCATCTTTCTGATTGTAGCCTGATGCATGCCACCTCCTTTTACCAGTTATTGTTGAATAGGTAGTATTCACATGATGGTCAAATAGTGCAGTGATCTT] consensusID : consensus_13809#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [ACTCCGGTAGGGGGAAGAAGGGCCGGGGCGGCCGTGAAGGGTAGCGGGTTCGGGAAGCCTCTTTAGGTGGACCAAAACGGGGGGGGTAACGCGTCGGCAACGAGGGGACCAGGGCACCCTGCATTTTGTGCGGATTTGTACCAGCTCAGCCCGTTTCCTCAGAAGTCGTAACTAGGCGGGTTCCAGTTCACACGTCCGGGAGGGTCATTTTCCAGAGGCCCATCATTTCCGTCATGCCTGTGATCCGTGTCCCAATGGCTCATGGCAAGCAATGTTTCAACTTTTACGTCGTCGGGTACAATAGGGATGTTTTCATAAGAGATTGTCCTTCGAAATTCCACTGGGGCCTCTGCTGTTGCTTTGAGTGGCTTCGGAACTAGTTATTTCTTGCCATGTGACAAAAATGGAGTGTGCAGTATTTGATAGTTTTACATACGGAGTAAGGCTTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATAAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAAAAGCCGTATCCTCGTATTCTATTACTAGGGCTTGGTCCATGTAGATTGTATTTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTCCAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762176 [ACTCCGGTAGGGGGAAGAAGGGCCGGGGCGGCCGTGAAGGGTAGCGGGTTCGGGAAGCCTCTTTAGGTGGACCAAAACGGGGGGGGTAACGCGTCGGCAACGAGGGGACCAGGGCACCCTGCATTTTGTGCGGATTTGTACCAGCTCAGCCCGTTTCCTCAGAAGTCGTAACTAGGCGGGTTCCAGTTCACACGTCCGGGAGGGTCATTTTCCAGAGGCCCATCATTTCCGTCATGCCTGTGATCCGTGTCCCAATGGCTCATGGCAAGCAATGTTTCAACTTTTACGTCGTCGGGTACAATAGGGATGTTTTCATAAGAGATTGTCCTTCGAAATTCCACTGGGGCCTCTGCTGTTGCTTTGAGTGGCTTCGGAACTAGTTATTTCTTGCCATGTGACAAAAATGGAGTGTGCAGTATTTGATAGTTTTACATACGGAGTAAGGCTTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATAAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAAAAGCCGTATCCTCGTATTCTATTACTAGGGCTTGGTCCATGTAGATTGTATTTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTCCAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13809#0 CGACCATGGAGGCGAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTC 60 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ------------------------------------------------------------ consensus_13809#0 TCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTA 120 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ------------------------------------------------------------ consensus_13809#0 CCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGC 180 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ------------------------------------------------------------ consensus_13809#0 GGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTC 240 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ------------------------------------------------------------ consensus_13809#0 CTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACAT 300 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ------------------------------------------------------------ consensus_13809#0 CCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGC 360 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ------------------------------------------------------------ consensus_13809#0 AATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACCAGCCTTCTCATGATGGCAG 420 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ------------------------------------------------------------ consensus_13809#0 AAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCG 480 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ------------------------------------------------------------ consensus_13809#0 GTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAA 540 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ------------------------------------------------------------ consensus_13809#0 TGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGA 600 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 ----------------------------------------------------GAGCGCGA 8 consensus_13809#0 ACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGA 660 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 CGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGG 68 consensus_13809#0 ACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAA 720 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 TAGGCGTACTGCCACCGCCTTCGCCGTCCGCCCTCGTTCTCTCCCCGATCCCCCATTTCA 128 consensus_13809#0 GATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACC 780 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 GGCTCCGTCTCGTGATCGTCTCACCCTGCCTGCCTCGTTTCGTCGAATTCCGTTCCCTGC 188 consensus_13809#0 ATGTCCTATTTGCAATGCTGGTCAGGAGCACGGATTTTACAAGGCAAATCAGATGACCCG 840 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 AGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTC 248 consensus_13809#0 TTGCAGTGCATGTCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATG 900 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 GTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCC 308 consensus_13809#0 TGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGT 960 consensus_13809#2 ------------------------------------------------------------ consensus_13809#1 GGAGGCCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCC 368 consensus_13809#0 AACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCG 1020 consensus_13809#2 ----------------------------------------------ACTCCGGTAGGGGG 14 consensus_13809#1 ACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATC 428 * * consensus_13809#0 ATGGAAGACACTGTCAGCAAGAAAAGTGAGCGC--AACTAGGGGAGCTGCCTCTGTGCCT 1078 consensus_13809#2 AAGAAGGGCCGGGGCGGCCGTGAAGGGTAGCG---GGTTCGGGAAGCCTCTTT------- 64 consensus_13809#1 GCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCC 488 * * ** * ** * * * * consensus_13809#0 GACGAAGTA-TTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTG 1137 consensus_13809#2 ----AGGTG-GACCAAAA----CGGGGGGGGTAACGCGTCGGCA-ACGAGGGGACCAGGG 114 consensus_13809#1 GTACCCGTATGGCGGCGAATACCAGCCTTCTCATGATGGCAGAAGGTGAGCACTTCCAAT 548 ** * * * * * * * * consensus_13809#0 CACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGC 1197 consensus_13809#2 CAC-CCTGCATTTTGTGCGGATTTGTACCAGCTCAGCCCGTT-TCCTCAGAAGTCGTAAC 172 consensus_13809#1 CGAAATCGGGTATT-TGCTGATTAGCTGTTA-TGATCCTGCTGCCGCAAGATCATATAAC 606 * * * * ** **** * * * ** * * * *** ** * consensus_13809#0 TAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGT 1257 consensus_13809#2 TAGGCGGGTTCCAGTTCACACGTCCGGGAGGGTCATTTTCCAGAGGCCCATCATTTCCGT 232 consensus_13809#1 TAAAATGGGT--AGTATGAAGTGTGAACGTGGTAAGAAATTGGGGACCGAAGACGAACAT 664 ** * * *** *** * * * * * * * * consensus_13809#0 CGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGT 1317 consensus_13809#2 CATGCCTGTGATCCGTGTCCCAATGGCTCATGGCAAGCAATGTTTCAACTTTTACGTCGT 292 consensus_13809#1 AAGAGAGAGGCGCTGTGTC-CATTAAAACGCGTGAGATATCCACCCTACTTGAATCCCAG 723 * * ***** ** * * * * * *** * * consensus_13809#0 CGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTG---CTGGGGCCT 1374 consensus_13809#2 CGGGTACAATAGGGATGTTTTCATAAGAGATTGTCCTTCGAAATTCCA---CTGGGGCCT 349 consensus_13809#1 TTGCTCCTATATGTCCCCTTCTGAACTTGTTTGCGCCTCCTTTTCCCATGCCAGGTACTT 783 * * * *** * ** * * ** * ** * * * ** * * consensus_13809#0 CTGCTGTTGCTTT-GAGTGGC-------TGCGGAACTAGTT-----ATTTCTTGCCATGT 1421 consensus_13809#2 CTGCTGTTGCTTT-GAGTGGC-------TTCGGAACTAGTT-----ATTTCTTGCCATGT 396 consensus_13809#1 GTAAAGGTTCTTAAGAGTAGCCAGCTAGTTGGCAAGCAGTAGCCAGATTATCTCTCATAT 843 * * * *** **** ** * * ** *** *** * *** * consensus_13809#0 GACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAA 1481 consensus_13809#2 GACAAAAATGGAGTGTGCAGTATTTGATAGTTTTACATACGGAGTAAGGCTTGT--ATAA 454 consensus_13809#1 TTAGCAAGCGGAATGTGCAATATTT--TGATTTGGTGT-TGCAGT--GGCCAGTTGGATA 898 ** ** ****** ***** * * * * * *** *** ** * consensus_13809#0 TTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGC----ATAACCCTGTGTGT 1537 consensus_13809#2 TTATAGCAAAACCGAAGATTAAAGAGGGTTGAATAAATAAGC----ATAACCCTGTGTGT 510 consensus_13809#1 ATATTGCGAAACGATATGTCTGCACAAATGGCACAGTCAGGCCAGAAAGATTTTGACAAT 958 *** ** **** * * * * * * ** * * ** * consensus_13809#0 TATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCA 1597 consensus_13809#2 TATGCATTTTTTACATTACAAAAGCCGTATCCTCGTATTCTATTACTAGGGCTTGGTCCA 570 consensus_13809#1 TTGCTAGCTAATGTAGTGCCAATTACACATACTCAGATTGTA--AGTAGGGCCAATTCAG 1016 * * * * * * * * ** *** *** ** * ****** ** consensus_13809#0 TGTAGATCATATCTGTAACA-ACTGCTCGGGCATGAATCAAATCAGTTGT----GAAGAC 1652 consensus_13809#2 TGTAGATTGTATTTGTAACA-ACTGCTCGGGCATGAATCAAATCAGTTGT----GAAGAC 625 consensus_13809#1 TCATCTTTCTGATTGTAGCCTGATGCATGCCACCTCCTTTTACCAGTTATTGTTGAATAG 1076 * * * **** * *** * * * ***** * *** * consensus_13809#0 TTTCCCTTAAAAAAAAAAAAAAAA-------------- 1676 consensus_13809#2 TTTCCCTTCCAAAAAAAAAAAAAAAAAAAAAAAAA--- 660 consensus_13809#1 GTAGTATTCACATGATGGTCAAATAGTGCAGTGATCTT 1114 * ** * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||