These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1049 fasta sequence [AAATTAACCCAAGTAGGATGCATTTTTCTTGACCTGAATCATGCTTGCTTTGCAGCATGCATGCCTGCCGTAAAGTCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAACTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCG-AAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTTGGAATCGGATTCCCGGTACTGAACCTGCTTTTTCTGCCAAAAAAAAAAAAAAAAAAAA] [-] EMBL AK109288 [AAATTAACCCAAGTAGGATGCATTTTTCTTGACCTGAATCATGCTTGCTTTGCAGCATGCATGCCTGCCGTAAAGTCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAACTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCG AAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTT ] [+] EMBL AU198281 [ GCGAAAGTNGGGCCCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCNAGTCGTCGGTGTCCAANANATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTTGGAATCGGATTCCCGGTACTGAACCTGCTTTTTCTGCCAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1005 fasta sequence [CAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGG-GG-A-CACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCA-NACCGGCTTCGGAGACACCACCGTNGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-TGTTCCGTGGTGGGCGGCACGGGCAA-TTCAGGATGGCCACCGGCTACGTGGCGTGGAAGACGGCCAGCATGAACTCCAGCACCTGGCGTGTACTAGCCCGACGTCTACGCGACCACCGCCAACGCGCAAACTAATCGACGCCCTCCGGCACACATATATCATCAGACGACGCGTTGCCGACCACATCTCACTACGCCAAGAGTAGCGATGTCTCCAGCCACTTCTACGCTCCCTCAGTGCACTCCGAGTTGCTACTGCCGATGATACTGTTGTGGTTCTGCCTCTAGTTGATCGTTATAGTGTGAGGTAAGACATAGAGTTAGTATTTGTTTCGAGCCTTATCTAGGCTGCGGCCCGGCTCGTTTTCGTTACAGGCCGCTATACAGTCATGCCGCGTAGTCAGGTGAGCAGGCTTATCTGAAAATTAGGCCTCAGCACCGAGCAGCACTGGCAGTGAACAGTTCGTGCGCGCCGCGACCTGTGAGATTCACAGTACACCCCTCGTGTGTGACTTGTCGTTTCGTTCCTCCTAATCTAGTCTTTGTATGTGCGATCCATCGGCCACGCCGCATGCTCTTCCGTTGTCTTGCCTACTAC] [+] EMBL C72987 [CAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGG GG A CACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCA NACCGGCTTCGGAGACACCACCGTNGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAG TGTTCCGTGGTGGGCGGCACGGGCAA TTCAGGATGGC ] [+] EMBL BE039812 [ CGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCTCCGCTCCTGCGGGCGGCGG A CACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTG TCCGGGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGCGTGGAAGACGGCCAGCATGAACTCCAGCACCTGGCGTGTACTAGCCCGACGTCTACGCGACCACCGCCAACGCGCAAACTAATCGACGCCCTCCGGCACACATATATCATCAGACGACGCGTTGCCGACCACATCTCACTACGCCAAGAGTAGCGATGTCTCCAGCCACTTCTACGCTCCCTCAGTGCACTCCGAGTTGCTACTGCCGATGATACTGTTGTGGTTCTGCCTCTAGTTGATCGTTATAGTGTGAGGTAAGACATAGAGTTAGTATTTGTTTCGAGCCTTATCTAGGCTGCGGCCCGGCTCGTTTTCGTTACAGGCCGCTATACAGTCATGCCGCGTAGTCAGGTGAGCAGGCTTATCTGAAAATTAGGCCTCAGCACCGAGCAGCACTGGCAGTGAACAGTTCGTGCGCGCCGCGACCTGTGAGATTCACAGTACACCCCTCGTGTGTGACTTGTCGTTTCGTTCCTCCTAATCTAGTCTTTGTATGTGCGATCCATCGGCCACGCCGCATGCTCTTCCGTTGTCTTGCCTACTAC] [+] EMBL OSS16578A [ GCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCNTGCGCCGCGCCGCCGCTCCTGCGGGCGG GGNA CACGNACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGG CAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCA NACCGGCTTCGGAGACACCACNGTGGTCGACG CGCGCTCACGGAGACCTCGTCGGCGACGTCCCC ] [+] EMBL OS1321742 [ CCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGANCGG GN ANCACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCA NACCGGCTTCGGAGACACCACNGTNGTCGACGAGNGGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAAGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGA ] consensusID : consensus_13834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 954 fasta sequence [TCGTCCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGC-AGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTG-TCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTG-TTTTCGAGTCTTTTAGTTTG-TT-GGAATC-GGATTCCCGTACTG-AACCTGCTTTTACTGC-AAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGACCGTGAAGGTATTACTGTACTGCAGCATAAAGGTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATTTTATTTTCACAAAAA] [+] EMBL AK106062 [TCGTCCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGC AGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTG TCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTG TTTTCGAGTCTTTTAGTTTG TT GGAATC GGATTCCCGTACTG AACCTGCTTTTACTGC AAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGACCGTGAAGGTATTACTGTACTGCAGCATAAAGGTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATT ] [+] EMBL AK119790 [ CCAGTCCAGGTTCAGCCATGGCGCCCACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCGCTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGCGGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGC AGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTG TCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTG TTTTCGAGTCTTTTAGTTTG TT GGAATC GGATTCCCGTACTG AACCTGCTTTTACTGC AAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGACCGTGAAGGTATTACTGTACTGCAGCATAAAGGTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATTTTA ] [-] EMBL C97220 [ CTGATGATGTGC TTAACNTCTACTTCACCGCCGGCGAGAACAACGGCAAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGNTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTATGTNTTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTG TC CCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACNNCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCT ] [+] EMBL AU101213 [ AAAAACGGC AGCACNATCGCGTTAATCGGCCACGAGGACACCACGGCCACGNTNAGGGAGCTGTCCGTGGTGGGCGGCAC GGNAAATTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTTCGCCNTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTTCGAGTTTTAGATTTTGNTTGGGNATCGGGNNTCCCGTACTGAAACCTGTTTTTACTGCAAANTTANTTNTTTGNTTGNTTGNTTGCNTTCCTGTCACTCCACCTTGACCGTGAAGGTATTACTGTACTGCAGCATAAAGGTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATTTTATTTTCACAAAAA] consensusID : consensus_13834#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGNCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGNNGCGACAGGTGGNGTGGNTGAATGCGTGCGTATGGNNTTTGGTGGTGNCCNTTGNTTGNNNNTNNTTNNNNNNNNNTNNNNTNNTNNNTNTCNNNNNTTTTTTGGGGNTTTTTTTTGTTTTNNNTTTTTTNTTTGTTGGNTTGGGTTT] [+] EMBL CA756126 [TGGCGTCAGCACCGGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCCCCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTGATGATGTGCGTGAACCTCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGNCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCGCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGNNGCGACAGGTGGNGTGGNTGAATGCGTGCGTATGGNNTTTGGTGGTGNCCNTTGNTTGNNNNTNNTTNNNNNNNNNTNNNNTNNTNNNTNTCNNNNNTTTTTTGGGGNTTTTTTTTGTTTTNNNTTTTTTNTTTGTTGGNTTGGGTTT] consensusID : consensus_13834#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CGTGAACCCTCTACTTCACCGCCGGCGAGAAACAACGCAGCACCATCCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGACTGTCCTGGTGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAATCGGGCCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTTGGAATCGGATTCCCGTACTGAACCTGCTTTTACTGCAAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGAGCGTGAAGGCAGCATAAAGGTCCCCCCCTTGAGCAAAAAAAAAA] [+] EMBL BI795931 [CGTGAACCCTCTACTTCACCGCCGGCGAGAAACAACGCAGCACCATCCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGACTGTCCTGGTGGCGGCACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGCTCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCCCGTTGGACGGCGGAGGCAGCAGCGGGTCGACGTCGACGGCGAATCGGGCCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGTGGTGGCGTTGGTTGGGCGTGGTTGGTGAGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTTGGAATCGGATTCCCGTACTGAACCTGCTTTTACTGCAAGTTAATTGTTTGGTTGGTTGGTTGCCTTCCTGTCACTCCACCTTGAGCGTGAAGGCAGCATAAAGGTCCCCCCCTTGAGCAAAAAAAAAA] consensusID : consensus_13834#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGNCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAACTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGNGCCC] [-] EMBL C97221 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGNCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAACTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGNGCCC] consensusID : consensus_13834#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 124 fasta sequence [TCTTTATTGTGAAAATAAAATGTATAGATAGGTGGTGAAGATGGTGCTCAAGGTGGGGACCTTTATGBTGCCTTCACGCTCAAGGTGGAGTGACAGGAAGGCAACCAACCAACCAAACAGTTTA] [+] EMBL OS38116 [TCTTTATTGTGAAAATAAAATGTATAGATAGGTGGTGAAGATGGTGCTCAAGGTGGGGACCTTTATGBTGCCTTCACGCTCAAGGTGGAGTGACAGGAAGGCAACCAACCAACCAAACAGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13834#1 ------------------------------------------------------------ consensus_13834#3 ------------------------------------------------------------ consensus_13834#2 ------------------------------------------------------------ consensus_13834#4 ------------------------------------------------------------ consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 AAATTAACCCAAGTAGGATGCATTTTTCTTGACCTGAATCATGCTTGCTTTGCAGCATGC 60 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 ------------------------------------------------------------ consensus_13834#3 ------------------------------------------------------------ consensus_13834#2 ------------------------------------------------------------ consensus_13834#4 ------------------------------------------------------------ consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 ATGCCTGCCGTAAAGTCTAAGCTTCACATGGTTATTATTAGTTAATTAATAGTAGAAATA 120 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 ------------------------------------------------------------ consensus_13834#3 ------------------------------------------------------------ consensus_13834#2 ------------------------------------------------------------ consensus_13834#4 ------------------------------------------------------------ consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 ATATAGTCATTTCTGCTACCTACTCCCACTTTCTGAGAGAATACCTGTTGATAAATTAAA 180 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 ----------------------------------------------CAGCCATGGCGCCC 14 consensus_13834#3 ------------------------------------------------------------ consensus_13834#2 ------------------------------TCGTCCAGTCCAGGTTCAGCCATGGCGCCC 30 consensus_13834#4 ------------------------------------------------------------ consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 CTTCCTGTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGCGCCC 240 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 ACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCG 74 consensus_13834#3 ------------------------------------------------------------ consensus_13834#2 ACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCG 90 consensus_13834#4 ------------------------------------------------------------ consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 ACCTCTCGCTCTCCCGCCGCCCTCTTCCTGCTGCTCGCGCTCGCCTGCGCCGCGCCGCCG 300 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 CTCCTGCGGGCGG-GGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGC 133 consensus_13834#3 ------------------------------------------------------------ consensus_13834#2 CTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGC 150 consensus_13834#4 ------------------------------------------------------------ consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 CTCCTGCGGGCGGCGGACACGCACCTCCACTTCTTCATGCACGACGTCGTCTCCGGCAGC 360 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 GGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAN-ACC 192 consensus_13834#3 -----------------------------------------------TGGCGTCAGCACC 13 consensus_13834#2 GGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACC 210 consensus_13834#4 ------------------------------------------------------------ consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 GGCCAGACGGCGGTGCAGGTCATCAAGGGCCCGACGTCGGCCAACGGTGGCGTCAGCACC 420 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 GGCTTCGGAGACACCACCGTNGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCC 252 consensus_13834#3 GGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCC 73 consensus_13834#2 GGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCC 270 consensus_13834#4 ------------------------------------------------------------ consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 GGCTTCGGAGACACCACCGTCGTCGACGACGCGCTCACGGAGACCTCGTCGGCGACGTCC 480 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 CCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTG 312 consensus_13834#3 CCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTG 133 consensus_13834#2 CCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTG 330 consensus_13834#4 ------------------------------------------------------------ consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 CCGGAGGTGGGGCGCGCGCAGGGGTTCTACATGATGTCGTCGCTGTCGAGCCCGACGCTG 540 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 ATGATGTGCGTGAACC-TCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGT 371 consensus_13834#3 ATGATGTGCGTGAACC-TCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGT 192 consensus_13834#2 ATGATGTGCGTGAACC-TCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGT 389 consensus_13834#4 --------CGTGAACCCTCTACTTCACCGCCGGCGAGAAACAACGCAGCACCATC-CGGT 51 consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 ATGATGTGCGTGAACC-TCTACTTCACCGCCGGCGAGAACAACGGCAGCACCATCGCGGT 599 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-TGTTCCGTGGTGGGCGGCACGG 430 consensus_13834#3 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-CTGTCCGTGGTGGGCGGCACGG 251 consensus_13834#2 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-CTGTCCGTGGTGGGCGGCACGG 448 consensus_13834#4 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAGACTGTCC-TGGTGG-CGGCACGG 109 consensus_13834#6 ---------------------------------------------------TCTTTATTG 9 consensus_13834#0 GATCGGCCACGACGACACCACGGCCACGGTGAGGGAG-CTGTCCGTGGTGGGCGGCACGG 658 consensus_13834#5 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGN 60 * consensus_13834#1 GCAA-TTCAGGATGGCCACCGGCTACGTGGCGTGGAAGACGGCCAGCATGAACTCCAGCA 489 consensus_13834#3 GCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGNCAGCATGAGCGCCAGCA 311 consensus_13834#2 GCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCA 508 consensus_13834#4 GCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCA 169 consensus_13834#6 TGAAAAT-AAAATGTATA---GATAGGTGGTGAAGATGGTGCTCAAGGTGGGGACCTTTA 65 consensus_13834#0 GCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCA 718 consensus_13834#5 CTAAGCTTCACATGGTTATT-ATTAGTTAATTAATAGTAGAAATAATATAGTCATTTCTG 119 ** * *** * ** * * * * consensus_13834#1 CCTGGCGTGTACTAGCCCGACGT----CTACGCGACCACCGCCAACGCGCAAACTAATCG 545 consensus_13834#3 CC-GGCGTGTTCGAGCTCGACGT----CTACGTCACCACGCCCAACGCCACAACCA-TCG 365 consensus_13834#2 CC-GGCGTGTTCGAGCTCGACGT----CTACGTCACCACGCCCAACGCCACAACCA-TCG 562 consensus_13834#4 CC-GGCGTGTTCGAGCTCGACGT----CTACGTCACCACGCCCAACGCCACAACCA-TCG 223 consensus_13834#6 T--GBTGCCTTCACGCTCAAGGTGGAGTGACAGGAAGGCAACCAACCAACCAAACAGTTT 123 consensus_13834#0 CC-GGCGTGTTCGAGCTCGACGT----CTACGTCACCACGCCCAACGCCACAACCA-TCG 772 consensus_13834#5 CTACCTACTCCCACTTTC---------TGAGAGAATACCTGTTGATAAATTAAACTTCCT 170 * * * * * * ** consensus_13834#1 ACGCCCTCCGGCACACATATATCATCAGACGACGCGTTGCCGACCACATCTCACTACGCC 605 consensus_13834#3 ACGCCTCCGCGCCGGTGT-CGCCGTTGGACG--GCGGAGGCAGCAGCGGGTCG--ACGTC 420 consensus_13834#2 ACGCCTCCGCGCCGGTGT-CGCCGTTGGACG--GCGGAGGCAGCAGCGGGTCG--ACGTC 617 consensus_13834#4 ACGCCTCCGCGCCGGTGT-C-CCGTTGGACG--GCGGAGGCAGCAGCGGGTCG--ACGTC 277 consensus_13834#6 A----------------------------------------------------------- 124 consensus_13834#0 ACGCCTCCGCGCCGGTGT-CGCCGTTGGACG--GCGGAGGCAGCAGCGGGTCG--ACGTC 827 consensus_13834#5 GTGGGCAGCAGCAGCAGCTAGTGTTCGTCCAGTCCAGGTTCAGCCATGGNGCCC------ 224 consensus_13834#1 AAGAGTAGCGATGTCTCCAGCCACTTCTACGCTCCCTCAGTGCACTCCGAGTTGCTAC-T 664 consensus_13834#3 GA---CGGCGAAGTC---GGGCGCG---GCGNNGCGACAG-GTGGNGTGGNTGAATGCGT 470 consensus_13834#2 GA---CGGCGAAGTC---GGGCGCG---GCGGGGCGACAG-GTGGGGTGGGTGAGTGCGT 667 consensus_13834#4 GA---CGGCGAA-TC---GGGC-CG---GCGGGGCGACAG-GTGGGGTGGGTGAGTGCGT 325 consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 GA---CGGCGAAGTC---GGGCGCG---GCGGGGCGACAG-GTGGGGTGGGTGAGTGCGT 877 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 GCCGATGATACTGTTGTGGT-TCTGCCTCTAGTTGATCGTTATAGTGTGAGGTAA----- 718 consensus_13834#3 GCGTATGGNNTT-TGGTGGTGNCCNTTGNTTGNNNNTNNTTNNNNNNNNNTNNNN----- 524 consensus_13834#2 GCGTAGTGGGGT-TGGTGGT----GGCGTTGGTTGGGCGTGGTTG-GTGAGGCGTCGAGT 721 consensus_13834#4 GCGTAGTGGGGT-TGGTGGT----GGCGTTGGTTGGGCGTGGTTG-GTGAGG-------- 371 consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 GCGTAGTGGGGT-TGGTGGT----GGCGTTGGTTGGGCGTGGTTG-GTGAGGCGTCGAGT 931 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 -GACATAGAGTTAGTATTTGTTTCGAGCCTTATCTA-GGCTGCGGCCCGGCTCGTTT--T 774 consensus_13834#3 -TNNTNNNTNTCNNNNNTTTTTTGGGGNTTTTTTTT-GTTTTNNNTTTTTTNTTTGT--T 580 consensus_13834#2 CGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTT 781 consensus_13834#4 ------TGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTT 425 consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 CGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTTCGAGTCTTTTAGTTTGTT 991 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 CGTTACAGGCCGCTA-TACAGTCATGCCGCGTAGT-CAGGTGAGCAGGCTTATCTGAAAA 832 consensus_13834#3 GGNTTGGGTTT------------------------------------------------- 591 consensus_13834#2 GGAATCGGATTCCCG-TACTGAACCTGCTTTTACTGCAAGTTAATTGTTTGGTTGGTTGG 840 consensus_13834#4 GGAATCGGATTCCCG-TACTGAACCTGCTTTTACTGCAAGTTAATTGTTTGGTTGGTTGG 484 consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 GGAATCGGATTCCCGGTACTGAACCTGCTTTTTCTGCCAAAAAAAAAAAAAAAAAAAA-- 1049 consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 TTAGGCCTCAGCACCGAGCAGCACTGGCAGTGAACAGTTCGTGCGCGCCGCGACCTGTGA 892 consensus_13834#3 ------------------------------------------------------------ consensus_13834#2 TT--GCCTTCCTGTCACTCCACCTTGACCGTGAA-GGTATTACTGTACTGCAGCATAAAG 897 consensus_13834#4 TT--GCCTTCCTGTCACTCCACCTTGAGCGTGAA-GG-------------CAGCATAAAG 528 consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 ------------------------------------------------------------ consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 GATTCACAGTACACCCCTCGTGTGTGACTTGTCGTTTCGTTCCTCCTAATCTAGTCTTTG 952 consensus_13834#3 ------------------------------------------------------------ consensus_13834#2 GTCCCCACCTTGACCACCATCTTCACCATCTATCTATACATTTTATTTTCACAAAAA--- 954 consensus_13834#4 GTCCCCCCCTTGAGCAAAAAAAAAA----------------------------------- 553 consensus_13834#6 ------------------------------------------------------------ consensus_13834#0 ------------------------------------------------------------ consensus_13834#5 ------------------------------------------------------------ consensus_13834#1 TATGTGCGATCCATCGGCCACGCCGCATGCTCTTCCGTTGTCTTGCCTACTAC 1005 consensus_13834#3 ----------------------------------------------------- consensus_13834#2 ----------------------------------------------------- consensus_13834#4 ----------------------------------------------------- consensus_13834#6 ----------------------------------------------------- consensus_13834#0 ----------------------------------------------------- consensus_13834#5 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||