These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1338 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTATAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGAAGGTCGCGGCCGCTAGAATAGTCTAGAGAAAAAACTTCCCAAACTCCCTGAACCTGAAAATTAAAGGACTGCAATGTTGTTGTCACCTGGTTATTGGGCTTATAGGGTTCAATAAGAAAGCGTCCCATTACAACTAGACTTTTCACGGCATTAAGGGGGTGGCCACACCCAGATAAGCGGACCGCGGCGGCGAAAATCATAGTACGGCAAAATATGATAAAAGAGGAAGAAA] [+] EMBL AK109383 [TTCCTCGAGCACTGTTGGCCTACTGGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTATAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGAAGGTCGCGGCCGCTAGAATAGTCTAGAGAAAAAACTTCCCAAACTCCCTGAACCTGAAAATTAAAGGACTGCAATGTTGTTGTCACCTGGTTATTGGGCTTATAGGGTTCAATAAGAAAGCGTCCCATTACAACTAGACTTTTCACGGCATTAAGGGGGTGGCCACACCCAGATAAGCGGACCGCGGCGGCGAAAATCATAGTACGGCAAAATATGATAAAAGAGGAAGAAA] consensusID : consensus_13840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1124 fasta sequence [ATCGCCTCAAAACTAACTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCAAGAAGTCTTTGTCATAAAAAAAAAA] [+] EMBL AK068225 [ATCGCCTCAAAACTAACTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCAAGAAGTCTTTGT ] [+] EMBL AK102811 [ GCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCAAGAAGTCTTTGT ] [+] EMBL CA754545 [ GTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAA CCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCANATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGNTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCCGTCACNAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGT ] [-] EMBL CB636292 [ GAAATTGCTTTGGTTCTTTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAAAGTGTGTGCTGCTATAATGTGAGAGCTTTGTTCGATGAGCTTCCTACCCCTCACCTAGTTTTGGAGATTACAGCTTTCCCTGCTGGACCTTTCACTGATAATGACTACCGCAAGGCCGAAAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGGTTACTTTTGCCCAAGCTGTAAATTTTTTACCGATGGGGCTTGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGGTTACTTTTGCCCAAGCTGTAAATTTTTTACCGATGGGCCTGTAAATTGATTCAGTCTTGGTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTTTGGTCAATTTTTTTAGAATTTTAATATTTGTGGTCAG ] [+] EMBL AU166729 [ ATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCAAGAAGTCTTTGTCATAAAAAAAAAA] consensusID : consensus_13840#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 631 fasta sequence [AAGCTGCGCGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCTGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGC-TTCCTACCCCTCACCTAGTTCTGGAGATTAC-AGCTTT-CCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGAT--GAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGT-CTTGCTAAGAAGTTAA-GAA-CTA----CTT---GT----AAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAAAAAAAGTGCTCAGTCTTTCTAGAACTCTAATATCCAAGAAGTCTTTGTCATAGCCCTACATTTTTAGGCCCCCCACTTATTTTTAAAAAAAAA] [+] EMBL BM419515 [AAGCTGCGCGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCTGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGC TTCCTACCCCTCACCTAGTTCTGGAGATTAC AGCTTT CCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGAT GAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGT CTTGCTAAGAAGTTAA GAA CTA CTT GT AAAACCTGAGTTCTGCTCAAaaaaaaaa ] [+] EMBL BI813231 [ aGTC GCGGATTCTTAAAGAAATT CTTTGGTTCTCTCTGAAGATGACCACTTTGTGGACGCCTCCA TCACAA GGTT TCAAATAAGGAGGGAAAGTGC CACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTTCCTACCCCTCACCTAGTTCTGGAGATTACAAGCTTTCCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGT CTGAGGATTGGAGTGCTTCCA TTAATTTCAG ACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGT CTTGCTAAGAAGTTAA GAA CTA CTT GT AAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAAAAAAA ] [-] EMBL BM422276 [ GAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGC TTCCTACCCCTCACCTAGTTCTGGAGATTAC AGCTTT CCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGAT GAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCCTTGCTAAGAAGTTAAGGAACCTAAACCCTTTTNGTTAAAAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTA ] [+] EMBL BQ908188 [ ccgTGTTCGATGAGC TTCCTACCCCTCACCTAGTTCTGGAGATTAC AGCTTT CCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGAT GAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGT CTTGCTAAGAAGTTAA GAA CTA CTT GT AAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCCAAGAAGTCTTTGTCATAGCCCTACATTTTTAGGCCCCCCACTTATTTTTAAAAAAAAA] consensusID : consensus_13840#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 553 fasta sequence [GCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGTTTCGTGCAGTTTCAATTCAAAAATCGATTTATCTCTCCTTCTCAGTTAATTTTATCCATGATTTATTAGAACGCGAAAGGTGTGTGGGATTCTGTAATCGTTAGGAGAATGTGGATCTTGGATAAGATATTCCTCTNTGGGCATCTGGATAGCGAGCT] [+] EMBL CB639790 [GCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGTTTCGTGCAGTTTCAATTCAAAAATCGATTTATCTCTCCTTCTCAGTTAATTTTATCCATGATTTATTAGAACGCGAAAGGTGTGTGGGATTCTGTAATCGTTAGGAGAATGTGGATCTTGGATAAGATATTCCTCTNTGGGCATCTGGATAGCGAGCT] [+] EMBL CB636291 [ CGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGTTTCGTGCAGTTTCAATTCAAAAATCGATTTATCTCTCCTTCTCAGTTAATTTTATCCATGATTTATTAGAACGCGAAAGGTGTGTGGGATTCTGTAATCGTTAAGAGAA ] consensusID : consensus_13840#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [CTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGGTAATCTGCATTAGCCGCGGCTGGTTTCGATTCGGGGGAAAAAAGGCTGGGGGTTCTTGATGCGCCTCGTGTCGTGTT] [+] EMBL AU166728 [CTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGGTAATCTGCATTAGCCGCGGCTGGTTTCGATTCGGGGGAAAAAAGGCTGGGGGTTCTTGATGCGCCTCGTGTCGTGTT] consensusID : consensus_13840#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [NTGNNTTTTNTNNGNTNGGCCTTTNNNAANNATGCTTTCCCNGCNGGACCTCNCACTGATNATGACTACCGCAAGGNCGANAGGCTCGAAATGGTGCTGAGGATGANTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCCCTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAAAAAAAAAAA] [+] EMBL AA751578 [NTGNNTTTTNTNNGNTNGGCCTTTNNNAANNATGCTTTCCCNGCNGGACCTCNCACTGATNATGACTACCGCAAGGNCGANAGGCTCGAAATGGTGCTGAGGATGANTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCCCTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ------------------------------------------------------------ consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ATCGCCTCAAAACTAACTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCG 60 consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ------------------------------------------------------------ consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 CCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCG 120 consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ------------------------------------------------------------ consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 TGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCC 180 consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ------------------------------------------------------------ consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 CCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGG 240 consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ------------------------------------------------------------ consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 TGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCT 300 consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ------------------------------------------------------------ consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 GCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCG 360 consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ------------------------------------------------------------ consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 CCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGG 420 consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ------------------------------------------------------------ consensus_13840#2 --AAGCTGCGCG-CGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTA 57 consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTA 480 consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ----------------------------------------------------CTGAATCA 8 consensus_13840#0 -------------------------------------TTCCTCGAGCACTGTTGGCCTAC 23 consensus_13840#2 GCAAATGGAAACCA-CAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAG 116 consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 GCAAATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAG 540 consensus_13840#3 ---------------------------GCCATATCGCCGCCGCCGCCGCCGCCATGCTCG 33 consensus_13840#4 CTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCG 68 consensus_13840#0 TGGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCG 83 consensus_13840#2 AAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCTGAAGATGACCACTTTG 176 consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 AAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTG 600 consensus_13840#3 CCTACCTCCTCCA-CGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTC 92 consensus_13840#4 CCTACCTCCTCCA-CGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTC 127 consensus_13840#0 CCTACCTCCTCCA-CGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTC 142 consensus_13840#2 TGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTG 236 consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 TGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTG 660 consensus_13840#3 CGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGG 152 consensus_13840#4 CGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGG 187 consensus_13840#0 CGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGG 202 consensus_13840#2 TGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGG 296 consensus_13840#5 ------------------------------NTGNNTTTTNTNNGNTNGGCCT----TTNN 26 consensus_13840#1 TGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGG 720 * * ** consensus_13840#3 CGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGC-GGTGGTGCCCATCGCGGCGTCGCT 211 consensus_13840#4 CGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGC-GGTGGTGCCCATCGCGGCGTCGCT 246 consensus_13840#0 CGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGC-GGTGGTGCCCATCGCGGCGTCGCT 261 consensus_13840#2 AGAT----TACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAG 352 consensus_13840#5 NAAN----NAT-GCTTTCCCNGCNGGACCTCNCACTGATNATGACTACCGCAAGGNCGAN 81 consensus_13840#1 AGAT----TACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAG 776 ** *** * * * * * * * * ** * * *** * ** consensus_13840#3 --GCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGC-TCCT 268 consensus_13840#4 --GCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGC-TCCT 303 consensus_13840#0 --GCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGC-TCCT 318 consensus_13840#2 AGGCTCGAAA---TGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTT 409 consensus_13840#5 AGGCTCGAAA---TGGTGCTGAGGATGANTGCTTCCATTTAATTTCAGAACACCCATTTT 138 consensus_13840#1 AGGCTCGAAA---TGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTT 833 ****** ****** * * * * * * ** * * * * consensus_13840#3 CCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGA------------ 316 consensus_13840#4 CCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGGT----------- 352 consensus_13840#0 CCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGA------------ 366 consensus_13840#2 CCATTTCAGCTTACTT--TTGCCCAAGCTGTAAATTTTCTACCGATGGG----------- 456 consensus_13840#5 CCATTTCAGCTTACTT--TTGCCCAAGCTGTAAATTTTCTACCGATGGG----------- 185 consensus_13840#1 CCATTTCAGCTTACTT--TTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGG 891 *** ** ** * * *** ** ** ** * * consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ------------------------------------------------------------ consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 TGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTT 951 consensus_13840#3 -------------GATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGT 363 consensus_13840#4 -------------AATCTGCATTAGCCGCGGCTGG--TTTCGATTCGGGGG---AAAAAA 394 consensus_13840#0 -------------GATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGT 413 consensus_13840#2 -------------------------------CCTGTAAATTGATTCAGTCTTGCTAAGAA 485 consensus_13840#5 -------------------------------CCTGTAAATTGATTCCCTCTTGCTAAGAA 214 consensus_13840#1 TTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAA 1011 * * ** * consensus_13840#3 GGGCGGACAAGCTGCGCGGCGGCGCGCCAGGTTTCGTGCAGTTTCAATTCAAAAATCGAT 423 consensus_13840#4 GGCTGGGGGTTCT------TGATGCGCCTCGTGTCGTGTT-------------------- 428 consensus_13840#0 GGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAG- 472 consensus_13840#2 GTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAAAAAAAGT 545 consensus_13840#5 GTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGT 274 consensus_13840#1 GTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGT 1071 * * ** * * * consensus_13840#3 TTATCTCTCCTTCTCAGTTAATTTTATCCATGATTTATTAGAACGCGAAAGGTGTGTGGG 483 consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ---------CTAGTTAGCAAATGGAAACCAACAACTATAGGCACGCTGAAGAGGACTTAC 523 consensus_13840#2 GCTCAGTCTTTCTAGAACTCTAATATCCAAGAAGTCTTTGTCATAGCCCTACATTTTTAG 605 consensus_13840#5 GCTCAAAAAAAAAAA--------------------------------------------- 289 consensus_13840#1 GCTCAGTCTTTCTAGAACTCTAATATC-AAGAAGTCTTTGTCATAAAAAAAAAA------ 1124 consensus_13840#3 ATTCTGTAATCGTTAGGAGAATGTGGATCTTGGATAAGATATTCCTCTNTGGGCATCTGG 543 consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 CGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCC 583 consensus_13840#2 GCCCCCCACTTATTTTTAAAAAAAAA---------------------------------- 631 consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ATAGCGAGCT-------------------------------------------------- 553 consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 GAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGT 643 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 GCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACC 703 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 CCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTAC 763 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 CGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAAC 823 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTC 883 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 GAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAG 943 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 CTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTG 1003 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 CTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAA 1063 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 TAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGAAGGTCGCGGCCGCTAGA 1123 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ATAGTCTAGAGAAAAAACTTCCCAAACTCCCTGAACCTGAAAATTAAAGGACTGCAATGT 1183 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 TGTTGTCACCTGGTTATTGGGCTTATAGGGTTCAATAAGAAAGCGTCCCATTACAACTAG 1243 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ------------------------------------------------------------ consensus_13840#4 ------------------------------------------------------------ consensus_13840#0 ACTTTTCACGGCATTAAGGGGGTGGCCACACCCAGATAAGCGGACCGCGGCGGCGAAAAT 1303 consensus_13840#2 ------------------------------------------------------------ consensus_13840#5 ------------------------------------------------------------ consensus_13840#1 ------------------------------------------------------------ consensus_13840#3 ----------------------------------- consensus_13840#4 ----------------------------------- consensus_13840#0 CATAGTACGGCAAAATATGATAAAAGAGGAAGAAA 1338 consensus_13840#2 ----------------------------------- consensus_13840#5 ----------------------------------- consensus_13840#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||