These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 601 fasta sequence [TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTC-AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC--ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA-CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTCT] [+] EMBL CA762718 [TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTCT] [+] EMBL CF312193 [ TTTTTTTTAGGCAGGCAAAACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATG ] [-] EMBL CF312192 [ TTTTTTTAGGCAGGCAAAACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGG ] [-] EMBL BE229909 [ AGGCAAAACACCGTCAAGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT ] [-] EMBL AK059562 [ AACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGAT ] [-] EMBL CA766945 [ AACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTG AAATCCCTCTTTGTTCTAATAATCACACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGCGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAAT ] [-] EMBL CF301833 [ ATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCCNAC CCAATCATCCGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTG GGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTT ] [-] EMBL BE229957 [ AAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT ] consensusID : consensus_13865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 565 fasta sequence [CACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGAGATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATCGCTCATACGTGGCCACACTGGAGAC] [-] EMBL CB685346 [CACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGAGATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCGGCGCT ] [-] EMBL BE229906 [ gATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT ] [+] EMBL CB685347 [ ACTAGCATTTAAAGAGGGAGATCCAGTCCCTTGCCGACTTCCACACCAATCATCTGAAAAATGCCCTTGTTCAGCACCACCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGTAGTTCCATATCTCTGCATTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCATCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCCCCATTGGTTCTGGCCTTGGTCTTGCTGGGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGATATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATCGCTCATACGTG ] [-] EMBL CB001036 [ ATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCGTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTAGGCACCTCAACCCCTGCAGGCAGCTATGCAGCTGTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCGTCAGAGGCTCGTGGCTCAAGATCGACAGATGTTCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTGTGACATCGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTAGGGCCAATGATAGTCAGCTTCCTCTATCATATATTGTTAGCAAGACGAGATGGGCAATCGTGCGTAGGTAGTCCAGTCGTAGGAGAGGCCACCATCGTTCAGACGTGGCCACACTGGAGAC] [-] EMBL BE230005 [ CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAACTGTCGCCGCCATTGGTTATGGCCTTGTTCTTGCTGTGTCCTGCTAGCCTAGCAAGGTTT ] consensusID : consensus_13865#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTAGTCCCAACAAGAAGGGAAAATCCCTCTTTGGTCTAATAATTTCACTGCATAAATCTCAT] [+] EMBL CF301834 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTAGTCCCAACAAGAAGGGAAAATCCCTCTTTGGTCTAATAATTTCACTGCATAAATCTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13865#0 TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTCAGATATATATCTCTCTGATGATATTA 60 consensus_13865#1 ------------------------------------------------------------ consensus_13865#2 ------------------------------------------------------------ consensus_13865#0 GTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATA 120 consensus_13865#1 ------------------------------------------CACTGCATAAATCTCATA 18 consensus_13865#2 ------------------------------------------------------------ consensus_13865#0 GTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGC 180 consensus_13865#1 GTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGC 78 consensus_13865#2 ------------------------------------------------------------ consensus_13865#0 CGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGG 240 consensus_13865#1 CGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGG 138 consensus_13865#2 ------------------------------------------------------------ consensus_13865#0 TGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAAC 300 consensus_13865#1 TGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAAC 198 consensus_13865#2 ------------------------------------------------------------ consensus_13865#0 CCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCT 360 consensus_13865#1 CCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCT 258 consensus_13865#2 ------------------------------------------------------------ consensus_13865#0 TTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCC 420 consensus_13865#1 TTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCC 318 consensus_13865#2 ------------------------------------------------------------ consensus_13865#0 TCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAG 480 consensus_13865#1 TCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAG 378 consensus_13865#2 ------------------------------------------------------------ consensus_13865#0 CTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT 540 consensus_13865#1 CTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT 438 consensus_13865#2 ---------------------------------------TTTTTTTTTTTTTTTTTTTTT 21 * * * *** consensus_13865#0 TCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTC 600 consensus_13865#1 TCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGAGATGGG 498 consensus_13865#2 TTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTAGTCCCAACAAGAAGGGAAAAT 81 * * ** **** * * ** ** * ** * * * consensus_13865#0 T----------------------------------------------------------- 601 consensus_13865#1 CAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATCGCTCATACGTGGCCACAC 558 consensus_13865#2 CCCTCTTTGGTC--TAATAATTTCACTGCATAAATC-TCAT------------------- 119 consensus_13865#0 ------- consensus_13865#1 TGGAGAC 565 consensus_13865#2 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||