Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1388 cluster # 1388       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1388#0 length = 1517 sequences # 2  

consensusID : consensus_1388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1517
fasta sequence
                              [GGCTTGTGTACCGTAATGAAGGCCGCTCATTATCGAAGCTGATATATACAGCTGAAGAAACAAAGTTAGTTACCGGTAACAATAATGAGAGGGTCAGGCATATTCAAGTTCTTCAACCATCAAAGTGGTGGTATTGGTTAAGGACAACGAAAGCTGGGCAAAAGCAAATGCAAAATCTCTTATGGCAGCTGCTGATGGGTCTGAAAGCTTGTCATGATCGTAATATCACTCACAGGGATATTAAACCTGAGAACATGATAATCTGCTTTGAGGATCTGGAGACAGGAAAGTGTTTGAGAGAGATTCCGTCGGAAGCAAAACACAACAAACTGA-ACATGCGTCTTATTGACTTTGGCAGTGCCTTTG-AT-GATTTCACATTGAAGCATCTTTATGATTCAGGGCCTACTCGGTCTGAGCAGACTTTCGAGTACACTCCTCCAGAGGCACTTCTTAATTCAAGTTGGTTTCAGGGATCAAAAAGTGCCAGACTTAAGTACGATATGTGGAGTGTTGGTGTTGTCATGCTGGAGTTGATAGTAGGTTCTCCACATGTTTTCCAGATAAGTGACCGTACACGTGCTCTAATGGATCATCGCCTTGAAGGGTGGAGTGAGCAAACAAAGGAACTTGCATACAAGTTGAGGTCCTACATGGAATTGTGCATTTTAGTCCCAGGAATTTCCTCGCAGCATCAGGGCAGTGGTGACTCTGAACATGGTCAGTTTCGGCCGGCTTCTTGGAAATGCTCTGAAGAATCATTTGCGCATCAAGTGAAGATCAGAGATCCTCTTAAAATGGGCTTTCCTAATATATGGGCATTGCGACTAGCACGCCAGTTACTAATATGGCATCCTGAGGACCGCCTAAGTGTCGATGAAGTATTAGCTCATCCTTACTTTCAGGAGCCACCGTAACCGACACATGATAAAAATCTAACGTACTCGTGACCTATAACAAGTCCTCCAAATTTTACTGCTGAGTGTACATTTGCTTGGTGAGTTCGATCGAAGGAATTGGTGAATCATTTGTAGATGCCAACCCGATTGTCTTACCAGCTGTTGTGAATACCACATGAAAAATAGTTGTACGCAGCAATATAGGTAGATGCAGGCTATGTAAGGATCAGAATCAGCTGTACAGATTATATGCTCAACCGAAATGAAGAAGAATGTTACAACTTTCAGCTGTGTTGAATTGTGTGCTTAGTCTCTTTGGAAGAACAAAGATTGTATACATAATTTTTTTCTACTCCCTCCATCCCATCCCAAAATAAGTGCAATTTTACACTATTCATATCCAACGTTTCACCGTTCGTCTTATTTGAATTTTTTTTATGATTACTATTTTTATTGTTATTAGATGATAAAACATGAATAGAACTTTATGTGTGACTATTTTTTTAAAAAAAATTCATAAAATTTTCAAATAAAACGGACGGTCAAACGTTGGACACGGATTTCTACGGCTGTATTTATTTTGGGACGGAGGTAATAATATAATTATGCAATACAACATTA]

[+] EMBL AK108746             [GGCTTGTGTACCGTAATGAAGGCCGCTCATTATCGAAGCTGATATATACAGCTGAAGAAACAAAGTTAGTTACCGGTAACAATAATGAGAGGGTCAGGCATATTCAAGTTCTTCAACCATCAAAGTGGTGGTATTGGTTAAGGACAACGAAAGCTGGGCAAAAGCAAATGCAAAATCTCTTATGGCAGCTGCTGATGGGTCTGAAAGCTTGTCATGATCGTAATATCACTCACAGGGATATTAAACCTGAGAACATGATAATCTGCTTTGAGGATCTGGAGACAGGAAAGTGTTTGAGAGAGATTCCGTCGGAAGCAAAACACAACAAACTGA ACATGCGTCTTATTGACTTTGGCAGTGCCTTTG AT GATTTCACATTGAAGCATCTTTATGATTCAGGGCCTACTCGGTCTGAGCAGACTTTCGAGTACACTCCTCCAGAGGCACTTCTTAATTCAAGTTGGTTTCAGGGATCAAAAAGTGCCAGACTTAAGTACGATATGTGGAGTGTTGGTGTTGTCATGCTGGAGTTGATAGTAGGTTCTCCACATGTTTTCCAGATAAGTGACCGTACACGTGCTCTAATGGATCATCGCCTTGAAGGGTGGAGTGAGCAAACAAAGGAACTTGCATACAAGTTGAGGTCCTACATGGAATTGTGCATTTTAGTCCCAGGAATTTCCTCGCAGCATCAGGGCAGTGGTGACTCTGAACATGGTCAGTTTCGGCCGGCTTCTTGGAAATGCTCTGAAGAATCATTTGCGCATCAAGTGAAGATCAGAGATCCTCTTAAAATGGGCTTTCCTAATATATGGGCATTGCGACTAGCACGCCAGTTACTAATATGGCATCCTGAGGACCGCCTAAGTGTCGATGAAGTATTAGCTCATCCTTACTTTCAGGAGCCACCGTAACCGACACATGATAAAAATCTAACGTACTCGTGACCTATAACAAGTCCTCCAAATTTTACTGCTGAGTGTACATTTGCTTGGTGAGTTCGATCGAAGGAATTGGTGAATCATTTGTAGATGCCAACCCGATTGTCTTACCAGCTGTTGTGAATACCACATGAAAAATAGTTGTACGCAGCAATATAGGTAGATGCAGGCTATGTAAGGATCAGAATCAGCTGTACAGATTATATGCTCAACCGAAATGAAGAAGAATGTTACAACTTTCAGCTGTGTTGAATTGTGTGCTTAGTCTCTTTGGAAGAACAAAGATTGTATACATAATTTTTTTCTACTCCCTCCATCCCATCCCAAAATAAGTGCAATTTTACACTATTCATATCCAACGTTTCACCGTTCGTCTTATTTGAATTTTTTTTATGATTACTATTTTTATTGTTATTAGATGATAAAACATGAATAGAACTTTATGTGTGACTATTTTTTTAAAAAAAATTCATAAAATTTTCAAATAAAACGGACGGTCAAACGTTGGACACGGATTTCTACGGCTGTATTTATTTTGGGACGGAGGTAATAATATAATTATGCAATACAACATTA]
[+] EMBL AA752545             [                                                                                     TGAGAGGGTCA VCATATTCAAGTTCTTCAACCATCAAAGTGGTGGCATTGGTTAAGAACAACGAAAGCTGGGCAAAANCAAATGCAAAATCTCTTATGGCAGCTGCTGATGGGTCTGAAAGCTTGTCATGATCGTAATATCACTCACAGGGATATTAAACCTGAGAACATGATAATCTGCTTTGAGGATCTGGAGACAGGVAAVTGTTTGAGAGAGATTCCSTCGGGAGCMAAACACAACAAACTGAWMTANGCGTC TATTGACTTTNGCAGTGCCATTGSATGGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_1388#0 GGCTTGTGTACCGTAATGAAGGCCGCTCATTATCGAAGCTGATATATACAGCTGAAGAAA CAAAGTTAGTTACCGGTAACAATAATGAGAGGGTCAGGCATATTCAAGTTCTTCAACCAT CAAAGTGGTGGTATTGGTTAAGGACAACGAAAGCTGGGCAAAAGCAAATGCAAAATCTCT TATGGCAGCTGCTGATGGGTCTGAAAGCTTGTCATGATCGTAATATCACTCACAGGGATA TTAAACCTGAGAACATGATAATCTGCTTTGAGGATCTGGAGACAGGAAAGTGTTTGAGAG AGATTCCGTCGGAAGCAAAACACAACAAACTGAACATGCGTCTTATTGACTTTGGCAGTG CCTTTGATGATTTCACATTGAAGCATCTTTATGATTCAGGGCCTACTCGGTCTGAGCAGA CTTTCGAGTACACTCCTCCAGAGGCACTTCTTAATTCAAGTTGGTTTCAGGGATCAAAAA GTGCCAGACTTAAGTACGATATGTGGAGTGTTGGTGTTGTCATGCTGGAGTTGATAGTAG GTTCTCCACATGTTTTCCAGATAAGTGACCGTACACGTGCTCTAATGGATCATCGCCTTG AAGGGTGGAGTGAGCAAACAAAGGAACTTGCATACAAGTTGAGGTCCTACATGGAATTGT GCATTTTAGTCCCAGGAATTTCCTCGCAGCATCAGGGCAGTGGTGACTCTGAACATGGTC AGTTTCGGCCGGCTTCTTGGAAATGCTCTGAAGAATCATTTGCGCATCAAGTGAAGATCA GAGATCCTCTTAAAATGGGCTTTCCTAATATATGGGCATTGCGACTAGCACGCCAGTTAC TAATATGGCATCCTGAGGACCGCCTAAGTGTCGATGAAGTATTAGCTCATCCTTACTTTC AGGAGCCACCGTAACCGACACATGATAAAAATCTAACGTACTCGTGACCTATAACAAGTC CTCCAAATTTTACTGCTGAGTGTACATTTGCTTGGTGAGTTCGATCGAAGGAATTGGTGA ATCATTTGTAGATGCCAACCCGATTGTCTTACCAGCTGTTGTGAATACCACATGAAAAAT AGTTGTACGCAGCAATATAGGTAGATGCAGGCTATGTAAGGATCAGAATCAGCTGTACAG ATTATATGCTCAACCGAAATGAAGAAGAATGTTACAACTTTCAGCTGTGTTGAATTGTGT GCTTAGTCTCTTTGGAAGAACAAAGATTGTATACATAATTTTTTTCTACTCCCTCCATCC CATCCCAAAATAAGTGCAATTTTACACTATTCATATCCAACGTTTCACCGTTCGTCTTAT TTGAATTTTTTTTATGATTACTATTTTTATTGTTATTAGATGATAAAACATGAATAGAAC TTTATGTGTGACTATTTTTTTAAAAAAAATTCATAAAATTTTCAAATAAAACGGACGGTC AAACGTTGGACACGGATTTCTACGGCTGTATTTATTTTGGGACGGAGGTAATAATATAAT TATGCAATACAACATTA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)