These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1590 fasta sequence [GTAAACCCTACCGGCGAAGAGGTTGACGGCGGCGGCGCGGGCGCGCGCNCGCNAG-ACGACGACGACGTC-TGCGCACTGCG-AGCGCAGAGGGGGGGTTTTTCCGAGATTTTCCTAAAAAGGGGACCTCGCCACNGTACCGAGAAAAGAAAAAGANTACGAGGCGAAAACCAANACCTCTCTCTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTCCACCCCCGTCCTCCCCCTCGTCCCGTCCCTTCTTTGGTTTCCTCCTCCC-CAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATATTCTTGAGAAGTACAGTTATACTTAGATTGATACCTTAAAAGG] [+] EMBL OSS5009A [GTAAACCCTACCGGCGAAGAGGTTGACGGCGGCGGCGCGGGCGCGCGCNCGCNAGAACGACGACGACGTC TGCGCACTGCG AGCGCAGAGGGGGGGTTTTTCCGAGATTTTCCTAAAAAGGGGACCTCGCCACNGTACCGAGAAAAGAAAAAGANTACGAGGCGAAAACCAANACCTCTNTCTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTTCAACCCCGTCCTCCNCCTCGTCCNGTCCCTTCTTTGGTTTCCTCCTCCCNAAATCCGAGGGG ] [+] EMBL AK072560 [ CGCGGGCGCGCGCGCGCGAG ACGACGACGACGTCGTGCGCACTGCGCAGCGCAGAGGGGGGGTTTTGCCGAGATTTTCCTAAAAAGGGGACCTCGCCACCGTACCGAGAAAAGAAAAAGAATACGAGGCGAAAACCAACACCTCTCTCTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTCCACCCCCGTCCTCCCCCTCGTCCCGTCCCTTCTTTGGTTTCCTCCTCCC CAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGA ] [+] EMBL AK104046 [ CTCTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTCCACCCCCGTCCTCCCCCTCGTCCCGTCCCTTCTTTGGTTTCCTCCTCCC CAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCCGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGG ] [+] EMBL CB685319 [ CCCCCCTTCCCGTCCCTTCTTTGGTTTCCTCCTCCC CAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCA ] [-] EMBL CB628714 [ AGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTTCTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCCCTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGT ] [+] EMBL CF322995 [ ACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATG ] [-] EMBL CB654206 [ ATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATATTCTTGAGAAGTACAGTTATACTTAGATTGAT ] [-] EMBL CB653976 [ GTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATAGTCTTGAGCCTTACAGTTATACTTAGATTGATACCTTAAAAGG] [+] EMBL CA763979 [ AAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGGTTGCAAGCTGCTATCGAAGC ] [+] EMBL AU097454 [ ATGAGCAAAGCTTTCATGATGGTNTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCNTAACTGACAGATGATGGATGAGTAGCGNGGCGAAATCNTCCCCTATGGTTGTATAATNAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTANTGTGAGNTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATATTCTTGAAAAaaa ] consensusID : consensus_13881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 852 fasta sequence [CCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGGTGAGCATTAGTTATCCAAGTACACGAACACGCTATATGCAGTCATGTATCGTATTTGATCACTAATCTGCAGGAGCTGTTAAACATTTCTACAAAAGGACTGCTATGTAAAATATCACTGATAAGTTGCGTTATACTTATTAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCGTGTGGTTTATAGAAGAGGTCAGTGATTTTTATTTGGAATGGGTAACATTTTGATCAGCTCATCTTGACTTTTGTCATGCAAGATCCACTTCTCCCCTGCCGCCTCTTAACCT] [+] EMBL CB653975 [CCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGGTGAGCATTAGTTATCCAAGTACACGAACACGCTATATGCAGTCATGTATCGTATTTGATCACTAATCTGCAGGAGCTGTTAAACATTTCTACAAAAGGACTGCTATGTAAAATATCACTGATAAGTTGCGTTATACTTATTAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCGTGTGGTTTATAGAAGAGGTCA ] [+] EMBL CB677569 [ GCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGGTGAGCATTAGTTATCCAAGTACACGAACACGCTATATGCAGTCATGTATCGTATTTGATCACTAATCTGCAGGAGCTGTTAAACATTTCTACAAAAGGACTGCTATGTAAAATATCACTGATAAGTTGCGTTATACTTATTAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCGTGTGGTTTATAGAAGAGGTCAGTGATTTTTATTTGGAATGGGTAACATTTTGATCAGCTCATCTTGACTTTTGTCATGCAAGATCCACTTCTCCCCTGCCGCCTCTTAACCT] consensusID : consensus_13881#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence [GGCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCTAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCG] [+] EMBL CF303188 [GGCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCTAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCG] [+] EMBL CF303072 [ GCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 GTAAACCCTACCGGCGAAGAGGTTGACGGCGGCGGCGCGGGCGCGCGCNCGCNAGACGAC 60 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 GACGACGTCTGCGCACTGCGAGCGCAGAGGGGGGGTTTTTCCGAGATTTTCCTAAAAAGG 120 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 GGACCTCGCCACNGTACCGAGAAAAGAAAAAGANTACGAGGCGAAAACCAANACCTCTCT 180 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 CTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTCCACCCCCGTCCTCCCCCTCGT 240 consensus_13881#1 -------------------CCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCC 41 consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 CCCGTCCCTTCTTTGGTTTCCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCC 300 consensus_13881#1 GCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGG 101 consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 GCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGG 360 consensus_13881#1 GCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTAC 161 consensus_13881#2 --------GGCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTAC 52 consensus_13881#0 GCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTAC 420 * ************************************************** consensus_13881#1 TTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATC 221 consensus_13881#2 TTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATC 112 consensus_13881#0 TTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATC 480 ************************************************************ consensus_13881#1 TGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGC 281 consensus_13881#2 TGCAGCAGGCTGTTGAATCAAGAGATAATGCTAGTGTCTGGGATGTTTCGGCAACCCGGC 172 consensus_13881#0 TGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGC 540 ******************************* **************************** consensus_13881#1 GTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATC 341 consensus_13881#2 GTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATC 232 consensus_13881#0 GTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATC 600 ************************************************************ consensus_13881#1 GTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGGTGAGC 401 consensus_13881#2 GTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAG------ 286 consensus_13881#0 GTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTA 660 ****************************************************** consensus_13881#1 ATTAGTTATCCAAGTACACGAACACGCTATATGCAGTCATGTA--TCGTATTTGATCACT 459 consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 AGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTC 720 consensus_13881#1 AATCTGCAGGAGCTGTTAAACATTTCTACAAAAGGAC-TGCTATGTAAAATATCACTGAT 518 consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 AAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGT 780 consensus_13881#1 AAGTTGCGTTATACTTATTAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAA 578 consensus_13881#2 ---------------------AATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAA 325 consensus_13881#0 CGCCTTC-TTGGACCAAGGGGAAATTCGTTGAA-GAGGATTGAGGCCTCTACAGGTTGTC 838 ** * ** * ***** ** * * * * consensus_13881#1 GGTCCTCAATTTATAGGGTGCCATCAATTTAA---TCCATCAAGGT----CCTCTTGAAG 631 consensus_13881#2 GGTCCTCAATTTATAGGGTGCCATCAATTTAA---TCCATCAAGGT----CCTCTTGAAG 378 consensus_13881#0 GTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGG 898 * * ** * * ****** ** * * ***** * *** * * consensus_13881#1 TAAAA-CTGGCT-------TTTAAAGAGTATTATGTATACCCTTA--AAAGAATGATTAC 681 consensus_13881#2 TAAAA-CTGGCT-------TTTAAAGAGTATTATGTATACCCTTA--AAAGAATGATTAC 428 consensus_13881#0 GAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTAC 958 ** **** * ** * * ** *** * * * *** **** consensus_13881#1 -TATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCG 740 consensus_13881#2 -TATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCG 487 consensus_13881#0 CTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACA-AGAAATCCTAGA--AGAGTTGT 1015 * ****** * *** ** * ** * ** * *** * * * consensus_13881#1 TGTGGTTTATAGAAGAGGTCAGTGATTTTTATTTGGAATGGGTA-----ACATTTTGATC 795 consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 TGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTT 1075 consensus_13881#1 AGCTCATCTTGACTTTTGTCATGCAAGATCCACTTCTCCCCTGCCGCCTCTTAACCT--- 852 consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 TGTTGAACTCACCACTTAGAGAGGAAAGCCCACATC-CTGGTAGTGCTTCTCCATTCAGT 1134 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 AATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACC 1194 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 CTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTT 1254 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 TCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGT 1314 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 GACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTAT 1374 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 GGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTG 1434 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 TGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTT 1494 consensus_13881#1 ------------------------------------------------------------ consensus_13881#2 ------------------------------------------------------------ consensus_13881#0 GTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATATTCTTGA 1554 consensus_13881#1 ------------------------------------ consensus_13881#2 ------------------------------------ consensus_13881#0 GAAGTACAGTTATACTTAGATTGATACCTTAAAAGG 1590 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||