These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2009 fasta sequence [CTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGTGGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCATGTCACTGTGGGCGTGGTTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAGTAAGTCCTTAGGCAAATATATGCATTATATAGTGTCTGAAATTTCACTTGGAGATCATCAAATTCCTGGCTGGGGCCTGGGAATAATGGTAGAGGTTCTTCTTTTCATTTGGCCAATTTCTAAATGACATAGTGTTGCCATACCCGCCCCCCCCCCCCCCCCAAAAAAAAAAAGTCATTGGCTGCTACTGGTCTTAGAACGACGCCTTTCTATATTATGGAACATTATGGAACATAATGTTTTGTGCTCTGCAGAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGGTGTGCTGTTTGTTTCATAAAAGCTATTATTCTCATGACATTACTGTATATGCGTTGGACTTGAACTTCTTGTTATAACTTAAAACTTGTGTATAAGATAGGATTAGGTTTATTGGACACAAAAATTTTATAATGTTACTGTGAGACATTCTATAACCATCAGCACACAGTCGTAGATCAGACTGTGAAACTTGGGTATTGACCCAACCAGACAGGCTATTCCAATCAAGCAATACTGCACAGATCATGCAAATGAATGTTCAGTAGCAGTATACTTGCTGGCAGTTTCCATCATTAGAATTGACCAATTCAGGTTAATGTTCATGAATAAAATTCAGTTTGAAACAACCACAAACACTTGGGTCAAGTCTTGAATAAACAAAGCAATAACATTTTCTTCTGGAAATACTTCACAAGTTCCATTATGGTTGAGCTGTATCCTCTTACTAAATAGGAATACTCTTGCAAGCTTCTCATATGTGGCTGAGTCTTGTTTGCCGAGGTTAAACTTGCTTTAAATCTTTTCTGAGCTAATACATGATTGATGCCATCACCAAGCTGATTTCATCATTTATATTTGCAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCT] [+] EMBL AK073871 [CTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGTGGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCATGTCACTGTGGGCGTGGTTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAGTAAGTCCTTAGGCAAATATATGCATTATATAGTGTCTGAAATTTCACTTGGAGATCATCAAATTCCTGGCTGGGGCCTGGGAATAATGGTAGAGGTTCTTCTTTTCATTTGGCCAATTTCTAAATGACATAGTGTTGCCATACCCGCCCCCCCCCCCCCCCCAAAAAAAAAAAGTCATTGGCTGCTACTGGTCTTAGAACGACGCCTTTCTATATTATGGAACATTATGGAACATAATGTTTTGTGCTCTGCAGAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGGTGTGCTGTTTGTTTCATAAAAGCTATTATTCTCATGACATTACTGTATATGCGTTGGACTTGAACTTCTTGTTATAACTTAAAACTTGTGTATAAGATAGGATTAGGTTTATTGGACACAAAAATTTTATAATGTTACTGTGAGACATTCTATAACCATCAGCACACAGTCGTAGATCAGACTGTGAAACTTGGGTATTGACCCAACCAGACAGGCTATTCCAATCAAGCAATACTGCACAGATCATGCAAATGAATGTTCAGTAGCAGTATACTTGCTGGCAGTTTCCATCATTAGAATTGACCAATTCAGGTTAATGTTCATGAATAAAATTCAGTTTGAAACAACCACAAACACTTGGGTCAAGTCTTGAATAAACAAAGCAATAACATTTTCTTCTGGAAATACTTCACAAGTTCCATTATGGTTGAGCTGTATCCTCTTACTAAATAGGAATACTCTTGCAAGCTTCTCATATGTGGCTGAGTCTTGTTTGCCGAGGTTAAACTTGCTTTAAATCTTTTCTGAGCTAATACATGATTGATGCCATCACCAAGCTGATTTCATCATTTATATTTGCAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCT] consensusID : consensus_13914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1236 fasta sequence [CTCCACGAGACGGCTTGACTTTCTTCGTCTTCTCCTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT-GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT-GTCACTGTGGG-CGTGG-TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC-TTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCTGGCATTGTTTAAAAAAAAAGAAAAAAAAAAA] [+] EMBL AK061384 [CTCCACGAGACGGCTTGACTTTCTTCGTCTTCTCCTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC TTTCTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCTGGCATTGT ] [+] EMBL AK104004 [ TCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCT ] [+] EMBL CB646682 [ CGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATA ] [+] EMBL OSS14438A [ CGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAG GAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGNCACCCTCACCGCGGCCCGCAAGGTGGGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGA NATGGTCACTGTGGGCCGTGGTTTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTTGGCAAATCAGNTACTACTGATTACG ] [+] EMBL CB632066 [ ACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGTGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAGCGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGC AGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAGAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAANAC ] [+] EMBL CA756266 [ AGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCANAAGGNGTACATTCATAGAGTTCCGAAGTGGGATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACAT ] [+] EMBL C93498 [ AGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGNTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGANATGCTCCAGTTCATGAAGC ] [-] EMBL CB646683 [ GCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC TTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCTGGCATTGTTTAAAAAAAAAG ] [-] EMBL CB632067 [ ACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAGAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTTTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTTTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC TTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTGTAGGTGTACA ] [+] EMBL CF292176 [ ATATGTGTACACTTTGGTTCAAATAAATGAGAGCTGGCATTGTTTAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13914#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence [GCCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGANCGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096611 [GCCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGANCGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA923286 [ TCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCACGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCT ] consensusID : consensus_13914#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [GGAGAAAATTGGTAGTTCAAAGAAAGAAACGTGGATTGAGTTTTGAAAAAGTTATGATANAGGTACAATAACACTTCGCCCCTAAAATGGTCTCCACGTGCTTTCCGTTGAAAAGTTCGCCCANCCTTTGAACTTGGACAATGNTTCCTAATTTGGAGGCCAAGTATTAGTTTTGGATGGGTGTTCCCCACAGAGCGCTTGGCGCCAACAAANACTTGATGCTGTGGAAGTATTATCCTTGGAGGGATTTTCCAAAGAATATCAATTGTCTTTGTGGGCGCACACAAACCTTCACAAGGGTAGCGCCAATGGTATGGAGATATTTGGAGTCTGACCGGACAATGGGGACATNACAGTTGACCCAGTGCCTGGATGGATACACGCAGGACCAGTGCAGATCTGCTGCTTGCAATGTGCAGAAGTGGACCCTGGATTCCCCGCGCATTTTGATGTTAATGTGTGTAACAATGAGCATTCCCCTGCAACATGTGTGCCTGGTGATGTGCCCCTGGGTTGTGTGTGTAATAACCATACAAGTGCTGCTTCTTACAGAATGTACTTCCCGTATTCACAAGTTTCAGATTATATGTGTACACCTTNGGTTCAAATAAATGAGAGCTGCATTGTTTACCCAAAAAAAAAA] [+] EMBL BM038461 [GGAGAAAATTGGTAGTTCAAAGAAAGAAACGTGGATTGAGTTTTGAAAAAGTTATGATANAGGTACAATAACACTTCGCCCCTAAAATGGTCTCCACGTGCTTTCCGTTGAAAAGTTCGCCCANCCTTTGAACTTGGACAATGNTTCCTAATTTGGAGGCCAAGTATTAGTTTTGGATGGGTGTTCCCCACAGAGCGCTTGGCGCCAACAAANACTTGATGCTGTGGAAGTATTATCCTTGGAGGGATTTTCCAAAGAATATCAATTGTCTTTGTGGGCGCACACAAACCTTCACAAGGGTAGCGCCAATGGTATGGAGATATTTGGAGTCTGACCGGACAATGGGGACATNACAGTTGACCCAGTGCCTGGATGGATACACGCAGGACCAGTGCAGATCTGCTGCTTGCAATGTGCAGAAGTGGACCCTGGATTCCCCGCGCATTTTGATGTTAATGTGTGTAACAATGAGCATTCCCCTGCAACATGTGTGCCTGGTGATGTGCCCCTGGGTTGTGTGTGTAATAACCATACAAGTGCTGCTTCTTACAGAATGTACTTCCCGTATTCACAAGTTTCAGATTATATGTGTACACCTTNGGTTCAAATAAATGAGAGCTGCATTGTTTACCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 CTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCC 60 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 TATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGC 120 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 GCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCA 180 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 -----------------------------------------CTCCACGAGACGGCTTGAC 19 consensus_13914#0 TCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGG 240 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 TTTCTTCGTCTTCTCCTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCT 79 consensus_13914#0 AGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTC 300 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 CGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAG 139 consensus_13914#0 GACGTCGACGGCACCCTCACCGCGCCCCGCAAGGTGGTGACGCCGGAGATGCTCCAGTTC 360 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 GCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCG 199 consensus_13914#0 ATGAAGCAGCTGCGCGAGCATGTCACTGTGGGCGTGGTTGGGGGATCTGATCTGGTGAAG 420 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 TCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGC 259 consensus_13914#0 ATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAAT 480 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 AGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGT 319 consensus_13914#0 GGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAGTAAGTCCTTAGGCAAAT 540 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 GTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGTGGTGACGCCG 379 consensus_13914#0 ATATGCATTATATAGTGTCTGAAATTTCACTTGGAGATCATCAAATTCCTGGCTGGGGCC 600 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 GAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCATGTCACTGTGGGCGTGGTTGGGGGA 439 consensus_13914#0 TGGGAATAATGGTAGAGGTTCTTCTTTTCATTTGGCCAATTTCTAAATGACATAGTGTTG 660 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 TCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTAC 499 consensus_13914#0 CCATACCCGCCCCCCCCCCCCCCCCAAAAAAAAAAAGTCATTGGCTGCTACTGGTCTTAG 720 consensus_13914#2 -------------------------GCCACAAGAACGGCGAACTCATTGGAACTCAAAGT 35 consensus_13914#3 ---------------------------GGAGAAAATTGGTAGTTCAAAGAAA---GAAAC 30 consensus_13914#1 TGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGT 559 consensus_13914#0 AACGACGCCTTTCTATATTATGGAACATTATGGAACATAATGTTTTGTGCTCTGCAGAGT 780 ** * * * consensus_13914#2 TTGAAATCCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTA 95 consensus_13914#3 GTGGATTGAGTTT--TGAAAAAGTTATGATANAGGTAC--AATAACACTTCGCCCC-TAA 85 consensus_13914#1 TTGAAATC-GTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTA 618 consensus_13914#0 TTGAAATC-GTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTA 839 ** * * **** ** * * * * * ** *** * * **** *** * * * consensus_13914#2 CATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAAT 155 consensus_13914#3 AATGGTCTCCACGTGCTTTCCGTTGAAAAG---TTCGCCCANC---CTTTGAACTTGGAC 139 consensus_13914#1 CATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAAT 678 consensus_13914#0 CATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAAT 899 ** * * * * * ** * ***** * * ** * *** * * * consensus_13914#2 GCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGANCGTGATGAGTTTGAAAA 215 consensus_13914#3 ----AATGNTTC-CTAATTTGGAG--------GCCAAGTA--------TTAGTTTTGGAT 178 consensus_13914#1 GCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAA 738 consensus_13914#0 GCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAA 959 **** ** * ** **** * **** * * ***** * consensus_13914#2 GTATGATAAGGTACATAACATTCGGC-CTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCG 274 consensus_13914#3 GGGTGTTCCC-CACAGAGCGCTTGGCGCCAACAAANACTTGATGCT--GTGGAAGTATTA 235 consensus_13914#1 GTATGATAAGGTACATAACATTCGGC-CTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCG 797 consensus_13914#0 GTATGATAAGGTACATAACATTCGGC-CTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCG 1018 * ** * *** * * * *** * ** * ** **** *** ** * consensus_13914#2 CCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAG 334 consensus_13914#3 TCC--TTGGA---GGGATTTTCCAAAGAATATCAATT--GTCTTTGTGGGCGCACACAAA 288 consensus_13914#1 CCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAG 857 consensus_13914#0 CCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAG 1078 ** *** * * ****** * * * ** * ** ** ** * * ***** consensus_13914#2 GCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTG 394 consensus_13914#3 CCTTC-ACAAGGGTAGC-GCCAATGGTATG--GAGATATTTGGAGTCTGACCGGACAATG 344 consensus_13914#1 GCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTG 917 consensus_13914#0 GCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTG 1138 ** **** * * ** * *** *** **** ** * * ** consensus_13914#2 GGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTG 454 consensus_13914#3 GGGACA----TNACAGTTGACCCAGTGCCTG-GATGGATACACGCAGGACCAGTGCA--- 396 consensus_13914#1 GGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTG 977 consensus_13914#0 GGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTG 1198 ****** *** ** ** ** * ** ** * **** * * consensus_13914#2 GACATACAGTT-ACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCG 513 consensus_13914#3 GATCTGCTGCT-TGCAATGTGCAGAAGTGGACCCTGGATTCCCCGCGCATTTTGATGTTA 455 consensus_13914#1 GACATACAGTT-ACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCG 1036 consensus_13914#0 GACATACAGGTGTGCTGTTTGTTTCATAAAAGCTATTATTCTCATGACATTACTGT---- 1254 ** * * * * * * * * * * * consensus_13914#2 AAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTA 573 consensus_13914#3 ATGTGTGT--AACAATGAGCATTCC-CCTGCAACATGTGTGCCTGGTGATGTGCCCCTGG 512 consensus_13914#1 AAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTA 1096 consensus_13914#0 ATATGCGTTGGAC-TTGAAC-TTCTTGTTATAAC--TTAAAACTTGTG-TATAAGATAGG 1309 * ** * * ** * * * * * consensus_13914#2 TTTCCCTTTTTTTTATACCATA--CAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTAT 631 consensus_13914#3 GTTGTGTGTGTAATA-ACCATA--CAAGTGCTGCTTCTTACAGAATGTACTTC-CCGTAT 568 consensus_13914#1 TTTCCCTTTTTTTTATACCATA--CAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTAT 1154 consensus_13914#0 ATTAGGTTTATTGGACACAAAAATTTTATAATGTTACTGTGAGACATTCTATAACCATCA 1369 ** * * * * ** * * * ** * ** *** * * ** * consensus_13914#2 TCACA-AGTTTCAGATTATATGTGTACAC-TTTGGT-TCAAATAAAAAAAAA-------- 680 consensus_13914#3 TCACA-AGTTTCAGATTATATGTGTACACCTTNGGT-TCAAATAAATGAGAGCTG-CATT 625 consensus_13914#1 TCACA-AGTTTCAGATTATATGTGTACAC-TTTGGT-TCAAATAAATGAGAGCTGGCATT 1211 consensus_13914#0 GCACACAGTCGTAGATCAGAC-TGTGAAACTTGGGTATTGACCCAACCAGACAGGCTATT 1428 **** *** **** * * *** * ** *** * * ** * * consensus_13914#2 ----AAAAAAAAAAAAAA------------------------------------------ 694 consensus_13914#3 GTTTACCCAAAAAAAAAA------------------------------------------ 643 consensus_13914#1 GTTTAAAAAAAAAGAAAAAAAAAAA----------------------------------- 1236 consensus_13914#0 --CCAATCAAGCAATACTGCACAGATCATGCAAATGAATGTTCAGTAGCAGTATACTTGC 1486 * ** * * consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 TGGCAGTTTCCATCATTAGAATTGACCAATTCAGGTTAATGTTCATGAATAAAATTCAGT 1546 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 TTGAAACAACCACAAACACTTGGGTCAAGTCTTGAATAAACAAAGCAATAACATTTTCTT 1606 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 CTGGAAATACTTCACAAGTTCCATTATGGTTGAGCTGTATCCTCTTACTAAATAGGAATA 1666 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 CTCTTGCAAGCTTCTCATATGTGGCTGAGTCTTGTTTGCCGAGGTTAAACTTGCTTTAAA 1726 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 TCTTTTCTGAGCTAATACATGATTGATGCCATCACCAAGCTGATTTCATCATTTATATTT 1786 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 GCAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGA 1846 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 CCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC 1906 consensus_13914#2 ------------------------------------------------------------ consensus_13914#3 ------------------------------------------------------------ consensus_13914#1 ------------------------------------------------------------ consensus_13914#0 TTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGT 1966 consensus_13914#2 ------------------------------------------- consensus_13914#3 ------------------------------------------- consensus_13914#1 ------------------------------------------- consensus_13914#0 TTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCT 2009 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||