These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1916 fasta sequence [ATCTCCCGTCACTTCGTCTCCTCCGCTCCTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAGGGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAGATGGGTATCCTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGAAAAATAAAGCAACAGAATACCATCTTGGACAACTGAAAGCAAAAATAGCAAAGTTGAGGACACAATTATTAGAGCCCCCTAAGGGTTCCACTGGTGGAGGAGATGGTTTTGAAGTCACAAAGTTTGGGCATGGTCGTGTTGCACTTATTGGATTTCCCAGTGTTGGAAAGTCAACTCTTTTGACTATGTTGACTGGGACCCATTCTGAAGCTGCATCATATGAGTTCACAACCCTCACTTGCATTCCTGGTATTATCCAGTACAATGATACCAAAATCCAACTTCTTGATCTTCCTGGTATCATTGAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC-TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC-TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG-CTACCGTGGATGAC-TTCATCGATGTTATTGAA-GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC-TG-CACAGTTGAAGACTTCTGCA-ACCATAT-CCATAGGAGTTTGGT-CAAGGATGTGAAGTATGTACTTGTATGGGG--AACAAGTGCGAGGCATTA-CCCGCAACATTGTGGGCTTGGCCATGTTC-TTCAAGAC-GAGGATGT-CGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTC-AAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCC-TCTGAAGACCTGAATGTGGACATGAAACCGCAG-TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG-TTGAGCTGTGCGCTAC-TTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGA-GGAGCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAAACGGATGATGCGTCTTATAAAGTGAGTATAAGGCTTGTACTGAACATGAAAGATAGAAAAACGTTCAAATTTAGATGGTATTCCACCGTCCTTTGGTCGGCTCCGATTGGTGCCATATGTTGAATTGAAGACCGGAAATGAAA] [+] EMBL AK105299 [ATCTCCCGTCACTTCGTCTCCTCCGCTCCTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAGGGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAGATGGGTATCCTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGAAAAATAAAGCAACAGAATACCATCTTGGACAACTGAAAGCAAAAATAGCAAAGTTGAGGACACAATTATTAGAGCCCCCTAAGGGTTCCACTGGTGGAGGAGATGGTTTTGAAGTCACAAAGTTTGGGCATGGTCGTGTTGCACTTATTGGATTTCCCAGTGTTGGAAAGTCAACTCTTTTGACTATGTTGACTGGGACCCATTCTGAAGCTGCATCATATGAGTTCACAACCCTCACTTGCATTCCTGGTATTATCCAGTACAATGATACCAAAATCCAACTTCTTGATCTTCCTGGTATCATTGAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGAC TTCATCGATGTTATTGAA GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGCA ACCATAT CCATAGGAGTTTGGT CAAGGATGTGAAGTATGTACTTGTATGGGG AACAAGTGCGAGGCATTA CCCGCAACATTGTGGGCTTGGCCATGTTC TTCAAGAC GAGGATGT CGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTC AAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCC TCTGAAGACCTGAATGTGGACATGAAACCGCAG TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG TTGAGCTGTGCGCTACTTTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATC ] [+] EMBL OSS1195A [ATCTCCCGTCACTTCGTCTNNTCCGCTCNTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAGGGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAGATGGGTATCNTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGNAAAATA ] [+] EMBL AK111540 [ CTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAGGGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAGATGGGTATCCTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGAAAAATAAAGCAACAGAATACCATCTTGGACAACTGAAAGCAAAAATAGCAAAGTTGAGGACACAATTATTAGAGCCCCCTAAGGGTTCCACTGGTGGAGGAGATGGTTTTGAAGTCACAAAGTTTGGGCATGGTCGTGTTGCACTTATTGGATTTCCCAGTGTTGGAAAGTCAACTCTTTTGACTATGTTGACTGGGACCCATTCTGAAGCTGCATCATATGAGTTCACAACCCTCACTTGCATTCCTGGTATTATCCAGTACAATGATACCAAAATCCAACTTCTTGATCTTCCTGGTATCATTGAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGAC TTCATCGATGTTATTGAA GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGCA ACCATAT CCATAGGAGTTTGGT CAAGGATGTGAAGTATGTACTTGTATGGGG AACAAGTGCGAGGCATTA CCCGCAACATTGTGGGCTTGGCCATGTTC TTCAAGAC GAGGATGT CGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTC AAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCC TCTGAAGACCTGAATGTGGACATGAAACCGCAG TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG TTGAGCTGTGCGCTAC TTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGA GGAGCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAAACGGATGATGCGTCTTATAAAGTGAGTATAAG ] [+] EMBL C26388 [ tgaATACCAAAATCCAACTTCTTGANCTTCCTGGTATCATTGAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGACTTTCATCGATGTTATTGAAGGGNAATCGGGAGTNCATAAAATGTG ] [+] EMBL AU095108 [ GGTCATNNCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCNGGATGCCTC AAAGTGAAGGACACCGCCAAATATTAACNAGAGAACNGGAAGCTGTTGGACNTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGACGNGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCNCNGCTATCAGATACGGGCATGAGTACAAAATTCACAACGCAGAGGTGTTATCCCGCGAGGATGCCAACCG ] [+] EMBL AK112055 [ TGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGAC TTCATCGATGTTATTGAA GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGCA ACCATAT CCATAGGAGTTTGGT CAAGGATGTGAAGTATGTACTTGTATGGGG AACAAGTGCGAGGCATTA CCCGCAACATTGTGGGCTTGGCCATGTTC TTCAAGAC GAGGATGT CG ] [+] EMBL OS0639A [ gggCAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGAC TTCATCGATGTTATTGAA GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGC ACCA ] [-] EMBL CB673079 [ CAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGCA ACCATAT CCATAGGAGTTTGGT CAAGGATGTGAAGTATGTACTTGTATGGGG AACAAGTGCGAGGCATTA CCCGCAACATTGTGGGCTTGGCCATGTTC TTCAAGAC GAGGATGT CGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTC AAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCC TCTGAAGACCTGAATGTGGACATGAAACCGCAG TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG TTGAGCTGTGCGCTAC TTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGA GGAGCATGGCAAAAaaaaga ] [+] EMBL AU108548 [ GATCCAGTTGTTCTTTCTACTGATAGAGTTGGCTTGCCACATTTGAAGACTTCTGCANCCCATATCCCATAGGATTTTGGTCCAAGGATGTGAAGTATNTACTTGTATGGGGGAAACAAGTGCGAGGCATTACCCCGCAACATTGTGGGCTTGGCCATGTTCTTTNAAGNCGGAGGATGTCCGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGNCGTTCGAGGCCGCTTCAAAGTCGCACACAAACGCGCCCGNTCGCATATCCGACAGGGAGAAGAAAGCTCC TCTGAAGACCTGAATGTGGACATGAAACCGCAG TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG TTGAGCTGTGCGCTAC TTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGT NTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGA GGAGCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAAAaaa ] [+] EMBL BI806711 [ atTCGCACAC AACGCGCCCGCTNGCATATCCGACA GGAGAAGAAAGCTCCTTCTG AGACCTGAATGTGGACATGAAACC CAGTTTTTGTC GCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGGTTTGA CTGTGCGCTAC TTTTTTCAATGTGGAGCCCTGTTTTGT CCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCC ATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGACGGAGCATGGCACCAGCTCAAATCTGGACCGTTAATTC AAACGGATGATGCGTCTTATAAAGTGAGTATAAGGCTTGTACTGAACATGAAAGATAGAAAAACGTTCAAATTTAGATGGTATTCCACCGTCCTTTGGTCGGCTCCGATTGGTGCCATATGTTGAATTGAAGACCGGAAATGAAA] consensusID : consensus_13932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence [TCGCCACCCAATTGCGTCTGTGATCACGTGCAATTGGCACTTAAACTGGGCAGGGTTACTAGCAAGAATTGGGAGGAAATGGCCCTAGTGAGAGTTGTATACAAAGCCCCAAGGCACGCACCCTGATTTCACAAATCCAGTTGTTCTTTCTACTAAAAAAGGTGGCTGCACAGTTGAAGACTTTTGCAACCATATCCATAGGAGTTTGGTCAAGGATGTGAAGTATGTACTTGTATGGGGAACAAGTGCGAGGCATTACCCGCAACATTGTGGGCTTGGCCATGTTTTTCAAGACGAGGATGTTGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGCCGGCGGTCGAGGCCGCTTCAAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCCTCTGAAGACCTG-ATGTGGACATGAAACCGCAGTTTTGTTGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTAAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCCCCCTTGCAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNAN] [-] EMBL CA760038 [TCGCCACCCAATTGCGTCTGTGATCACGTGCAATTGGCACTTAAACTGGGCAGGGTTACTAGCAAGAATTGGGAGGAAATGGCCCTAGTGAGAGTTGTATACAAAGCCCCAAGGCACGCACCCTGATTTCACAAATCCAGTTGTTCTTTCTACTAAAAAAGGTGGCTGCACAGTTGAAGACTTTTGCAACCATATCCATAGGAGTTTGGTCAAGGATGTGAAGTATGTACTTGTATGGGGAACAAGTGCGAGGCATTACCCGCAACATTGTGGGCTTGGCCATGTTTTTCAAGACGAGGATGTTGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGCCGGCGGTCGAGGCCGCTTCAAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCCTCTGAAGACCTG ATGTGGACATGAAACCGCAGTTTTGTTGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTAAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCCCCCTTGCAA AAAAAAAAAAAAAA ] [+] EMBL AU033020 [ CGCAACATTGTGGGCTTGGCCATGTTCTTCAAGACGAGGATGTCGTCCAGATAGTNAAGNAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTCAAGTCGCACANAAACGCGCCCGCTCGCATNTCCGACAGGGAGAAGAAAGCTCCTNTNAAGACCTGAATGTGGACATGAAACCGCAGTTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATNTCTCTNCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATC AAAAAAATAAAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNAN] consensusID : consensus_13932#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [TCCTTCAGAAGGCCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAATACGGACGCCAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCATGTGGACGAAGATGCTCACCTCAGTGGCAACCCATTGAACCTAATTAAATTGCCATTATTATTGAGGGAGCCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAACGGATGATGCTCTTATAAAGTGAGTATAAGCTGTACTGACTGAAAGATAGCAACCGTCAATTAGATGTATCCCCTCCTTGGTCGCTCCGATTTGGTGCCATATTTTTGGAAATTTGAACCGACCGGA] [+] EMBL BI797547 [TCCTTCAGAAGGCCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAATACGGACGCCAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCATGTGGACGAAGATGCTCACCTCAGTGGCAACCCATTGAACCTAATTAAATTGCCATTATTATTGAGGGAGCCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAACGGATGATGCTCTTATAAAGTGAGTATAAGCTGTACTGACTGAAAGATAGCAACCGTCAATTAGATGTATCCCCTCCTTGGTCGCTCCGATTTGGTGCCATATTTTTGGAAATTTGAACCGACCGGA] consensusID : consensus_13932#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [TGCGCTACTTTTTTCAATGTGGAGCCCTNTTTTGTGCCTTCAGAAGGGCNATACTTGNGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCNGAACACACCTTTGNNGTGCNACTATGAACATCATTGTGTATCTGTGCACNNTTGNNAATACGGGCGGNAAATGGNTGTCTGCGCTTGTGTTAAAAAAAA] [+] EMBL AU058445 [TGCGCTACTTTTTTCAATGTGGAGCCCTNTTTTGTGCCTTCAGAAGGGCNATACTTGNGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCNGAACACACCTTTGNNGTGCNACTATGAACATCATTGTGTATCTGTGCACNNTTGNNAATACGGGCGGNAAATGGNTGTCTGCGCTTGTGTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 ATCTCCCGTCACTTCGTCTCCTCCGCTCCTTGCGCCGCCGCCAAGACGAGTCGCGGCTGA 60 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 ACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAG 120 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 GGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAG 180 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 ATGGGTATCCTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGAAAAAT 240 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 AAAGCAACAGAATACCATCTTGGACAACTGAAAGCAAAAATAGCAAAGTTGAGGACACAA 300 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 TTATTAGAGCCCCCTAAGGGTTCCACTGGTGGAGGAGATGGTTTTGAAGTCACAAAGTTT 360 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 GGGCATGGTCGTGTTGCACTTATTGGATTTCCCAGTGTTGGAAAGTCAACTCTTTTGACT 420 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 ATGTTGACTGGGACCCATTCTGAAGCTGCATCATATGAGTTCACAACCCTCACTTGCATT 480 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 CCTGGTATTATCCAGTACAATGATACCAAAATCCAACTTCTTGATCTTCCTGGTATCATT 540 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 GAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCA 600 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 GATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACT 660 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 AGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAA 720 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 AAGAAGAAGACTGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAG 780 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 AAGCTCTGCTATCAGATACTGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGC 840 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 GAGGATGCTACCGTGGATGACTTCATCGATGTTATTGAAGGAAATCGGAAGTACATAAAA 900 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 -----------------------------------------------------------T 1 consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 TGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCT 960 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 CGCCACCCAATTGCGTCTGTGATCACGTGCAATTGGCACTTAAACTGGGCAGGGTTACTA 61 consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 CGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTA 1020 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 GCAAGAAT-TGGGAGGAAATGGCCCTAGTGAGAGTTGTATACAAAGCCCCAAGGCACGCA 120 consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 GCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGT-GTATACAAAGCCACAAGGACAGCA 1079 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 CCCTGATTTCACAAATCCAGTTGTTCTTTCTACTAAAAAAGGTGGCTGCACAGTTGAAGA 180 consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 ACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGCTGCACAGTTGAAGA 1139 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 CTTTTGCAACCATATCCATAGGAGTTTGGTCAAGGATGTGAAGTATGTACTTGTATGGGG 240 consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 CTTCTGCAACCATATCCATAGGAGTTTGGTCAAGGATGTGAAGTATGTACTTGTATGGGG 1199 consensus_13932#2 ------------------------------------------------TCCTTCAGAAGG 12 consensus_13932#1 AACAAGTGCGAGGCATTACCCGCAACATTGTGGGCTTGGCCATGTTTTTCAAGACGAGGA 300 consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 AACAAGTGCGAGGCATTACCCGCAACATTGTGGGCTTGGCCATGTTCTTCAAGACGAGGA 1259 consensus_13932#2 CCCATACTTGAG----TACTCGCCTGGTTCCGTTCCTC-CTGTATCTCTCGCAGAACACA 67 consensus_13932#1 TGTTGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGCCGGCGGTCGAGGCCGCTTCAAGTC 360 consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 TGTCGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTCAAGTC 1319 consensus_13932#2 CCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCA-------CCATTGCAATAC 120 consensus_13932#1 GCACACAAACGCGCCCGCT-CGCATATCCGACAGGGAGAAGAAAGC-TCCTCTGAAGACC 418 consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 GCACACAAACGCGCCCGCT-CGCATATCCGACAGGGAGAAGAAAGC-TCCTCTGAAGACC 1377 consensus_13932#2 GGACGCCAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCATG 180 consensus_13932#1 TGA-TGTGGACATGAAACCGCAGTTTTGTTGGCTGTGCCAACATCAAAATAGAGCTACTT 477 consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 TGAATGTGGACATGAAACCGCAGTTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTT 1437 consensus_13932#2 TGGACGAAGATGCTCACCTCAGTGGCAACCCATTGAACCTA-ATTAAATTGCCATTATTA 239 consensus_13932#1 TTTTG-----CCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTT 532 consensus_13932#3 -----------------------------TGCGCTACTTTTTTCAATGTGGAGCCCTNTT 31 consensus_13932#0 TTTTG-----CCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTT 1492 consensus_13932#2 TTGAGGGAGCCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAACGGATGATGCTCTT 299 ** * * ** ** * ** ** consensus_13932#1 TTGTGCCTTAAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCC--TGTATCT 590 consensus_13932#3 TTGTGCCTTCAGAAGGGCNATACTTGNGTACTCGCCTGGTTCCGTTCCTCC--TGTATCT 89 consensus_13932#0 TTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCC--TGTATCT 1550 consensus_13932#2 ATA-AAGTGAGTATAAGCTGTACT-GACTGAAAGATAGCAACCGTCAATTAGATGTATCC 357 * * * ** **** * * * * **** * ****** consensus_13932#1 CTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCCCCCTT 650 consensus_13932#3 CTCTGCNGAACACACCTTTGNNGTGCNACTATGAACATCATTGTGTATCTGTGCACNNTT 149 consensus_13932#0 CTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATT 1610 consensus_13932#2 CCTCCTTGGTCGCTCCGATTTGGTGCCAT-------ATTTTTGGAAATTTGAACCGACCG 410 * * * * ** * **** * ** *** ** ** * consensus_13932#1 GCAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAANNNNNAN------------------ 691 consensus_13932#3 GNNAATACGGGCGGNAAATGGNTGTC-TGCGCTTGTGTTAAAAAAAA------------- 195 consensus_13932#0 GCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCA 1670 consensus_13932#2 GA---------------------------------------------------------- 412 * consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 ATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATA 1730 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 TGAGGAGCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAAACGGATGATGCGTCTTA 1790 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 TAAAGTGAGTATAAGGCTTGTACTGAACATGAAAGATAGAAAAACGTTCAAATTTAGATG 1850 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------------------------------------------------------------ consensus_13932#3 ------------------------------------------------------------ consensus_13932#0 GTATTCCACCGTCCTTTGGTCGGCTCCGATTGGTGCCATATGTTGAATTGAAGACCGGAA 1910 consensus_13932#2 ------------------------------------------------------------ consensus_13932#1 ------ consensus_13932#3 ------ consensus_13932#0 ATGAAA 1916 consensus_13932#2 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||