These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1811 fasta sequence [GCACTCCCTCTCCCACCACCACTCCACACCTGACACCACGCGGGCTGCCTCCATCGTCATCGATCCATCTCCGTATCTCTCACCGACCCCAAATCGCACAGCTCCAGCTCCTCCTCGATCCCCGTCGCGATCGGCGAGATGGCCACGGCGATCCCGCAGCGGCAGCTCTTCGTCGCCGGCGAGTGGCGCGCCCCCGCGCTCGGCCGCCGCCTCCCCGTCGTCAACCCCGCCACCGAGTCCCCCATCGGCGAGATCCCGGCGGGCACGGCGGAGGACGTGGACGCGGCGGTGGCGGCGGCGCGGGAGGCGCTGAAGAGGAACCGGGGCCGCGACTGGGCGCGCGCGCCGGGCGCCGTCCGGGCCAAGTACCTCCGCGCAATCGCGGCCAAGATAATCGAGAGGAAATCTGAGCTGGCTAGACTAGAGACGCTTGATTGTGGGAAGCCTCTTGATGAAGCAGCATGGGACATGGACGATGTTGCTGGATGCTTTGAGTACTTTGCAGATCTTGCAGAATCCTTGGACAAAAGGCAAAATGCACCTGTCTCTCTTCCAATGGAAAACTTTAAATGCTATCTTCGGAAAGAGCCTATCGGTGTAGTTGGGTTGATCACACCTTGGAACTATCCTCTCCTGATGGCAACATGGAAGGTAGCTCCTGCCCTGGCTGCTGGCTGTACAGCTGTACTAAAACCATCTGAATTGGCTTCCGTGACTTGTTTGGAGCTTGCTGATGTGTGTAAAGAGGTTGGTCTTCCTTCAGGTGTGCTAAACATAGTGACTGGATTAGGTTCTGAAGCCGGTGCTCCTTTGTCATCACACCCTGGTGTAGACAAGGTTGCATTTACTGGGAGTTATGAAACTGGTAAAAAGATTATGGCTTCAGCTGCTCCTATGGTTAAGCCTGTTTCACTGGAACTTGGTGGAAAAAGTCCTATAGTGGTGTTTGATGATGTTGATGTTGAAAAAGCTGTTGAGTGGACTCTCTTTGGTTGCTTTTGGACCAATGGCCA-GATTTGCAGTGCAACATCGCGTCTTATTCTTCATAAAAAAATCGCTAAAGAATTTCAAGAAAGGATGGTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTAGTGAAGGACA-GTATGAGAAGATTAAGCAATTTGTA-TCTACCGCCAAAAGCCAAGGTGCTACCATTCTGACT-GGTGGGG-TTAGACCCAAGCATCTGGAGAAAGGTTTCTATA-TTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCA-TTGAATTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCG-AGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGG-AATTATCTGGGTGAACTGCT-CGCAACCCTGCTTCTGCCAAGCTCCAT-GGGGCGGGAACAAGCG-CAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTAAAAAAAAAAAAAA] [+] EMBL AK071221 [GCACTCCCTCTCCCACCACCACTCCACACCTGACACCACGCGGGCTGCCTCCATCGTCATCGATCCATCTCCGTATCTCTCACCGACCCCAAATCGCACAGCTCCAGCTCCTCCTCGATCCCCGTCGCGATCGGCGAGATGGCCACGGCGATCCCGCAGCGGCAGCTCTTCGTCGCCGGCGAGTGGCGCGCCCCCGCGCTCGGCCGCCGCCTCCCCGTCGTCAACCCCGCCACCGAGTCCCCCATCGGCGAGATCCCGGCGGGCACGGCGGAGGACGTGGACGCGGCGGTGGCGGCGGCGCGGGAGGCGCTGAAGAGGAACCGGGGCCGCGACTGGGCGCGCGCGCCGGGCGCCGTCCGGGCCAAGTACCTCCGCGCAATCGCGGCCAAGATAATCGAGAGGAAATCTGAGCTGGCTAGACTAGAGACGCTTGATTGTGGGAAGCCTCTTGATGAAGCAGCATGGGACATGGACGATGTTGCTGGATGCTTTGAGTACTTTGCAGATCTTGCAGAATCCTTGGACAAAAGGCAAAATGCACCTGTCTCTCTTCCAATGGAAAACTTTAAATGCTATCTTCGGAAAGAGCCTATCGGTGTAGTTGGGTTGATCACACCTTGGAACTATCCTCTCCTGATGGCAACATGGAAGGTAGCTCCTGCCCTGGCTGCTGGCTGTACAGCTGTACTAAAACCATCTGAATTGGCTTCCGTGACTTGTTTGGAGCTTGCTGATGTGTGTAAAGAGGTTGGTCTTCCTTCAGGTGTGCTAAACATAGTGACTGGATTAGGTTCTGAAGCCGGTGCTCCTTTGTCATCACACCCTGGTGTAGACAAGGTTGCATTTACTGGGAGTTATGAAACTGGTAAAAAGATTATGGCTTCAGCTGCTCCTATGGTTAAGCCTGTTTCACTGGAACTTGGTGGAAAAAGTCCTATAGTGGTGTTTGATGATGTTGATGTTGAAAAAGCTGTTGAGTGGACTCTCTTTGGTTGCTTTTGGACCAATGGCCATGATTTGCAGTGCAACATCGCGTCTTATTCTTCATAAAAAAATCGCTAAAGAATTTCAAGAAAGGATGGTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTAGTGAAGGACA GTATGAGAAGATTAAGCAATTTGTA TCTACCGCCAAAAGCCAAGGTGCTACCATTCTGACT GGTGGGG TTAGACCCAAGCATCTGGAGAAAGGTTTCTATA TTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCA TTGAATTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCG AGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGG AATTATCTGGGTGAACTGCT CGCAACCCTGCTTCTGCCAAGCTCCAT GGGGCGGGAACAAGCG CAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATA ] [+] EMBL CB655655 [ CACCACTCCACACCTGACACCACGCGGGCTGCCTCCATCGTCATCGATCCATCTCCGTATCTCTCACCGACCCCAAATCGCACAGCTCCAGCTCCTCCTCGATCCCCGTCGCGATCGGCGAGATGGCCACGGCGATCCCGCAGCGGCAGCTCTTCGTCGCCGGCGAGTGGCGCGCCCCCGCGCTCGGCCGCCGCCTCCCCGTCGTCAACCCCGCCACCGAGTCCCCCATCGGCGAGATCCCGGCGGGCACGGCGGAGGACGTGGACGCGGCGGTGGCGGCGGCGCGGGAGGCGCTGAAGAGGAACCGGGGCCGCGACTGGGCGCGCGCGCCGGGCGCCGTCCGGGCCAAGTACCTCCGCGCAATCGCGGCCAAGATAATCGAGAGGAAATCTGAGCTGGCTAGACTAGAGACGCTTGATTGTGGGAAGCCTCTTGATGAAGCAGCATGGGACATGGACGATGTTGCTGGATGCTTTGAGTACTTTGCAGATCTTGCAGAATCCTTGGACAAAAGGCAAAATGCACCTGTCTCTCTTCCAATGGAAAACTTTAAATGCTATCTTCGGAAAGAGCCTATCGGTGTAGTTGGGTTGATCACACCTTGGAACTATCCTCTCCTGATGGCAACATGGAAGGTAGCTCCTGCCCTGGCTGCTGGCTGTACAGCTGTACTANAACCATCTGAATTGGCTTCCGTGACTTGTTTGGAGCTTGCTGATGTGTGTAAAGAGGTTGGTCTTCCTTCAGGTGTGCTAAACATAGTGACTGGATTAGGTTCTGAAGCCGGTGCTCCTTTGTCATCACACCCTGGTGTAGACAAGtt ] [+] EMBL CB649658 [ CTCCTCGATCCCCGTCGCGATCGGCGAGATGGCCACGGCGATCCCGCAGCGGCAGCTCTTCGTCGCCGGCGAGTGGCGCGCCCCCGCGCTCGGCCGCCGCCTCCCCGTCGTCAACCCCGCCACCGAGTCCCCCATCGGCGAGATCCCGGCGGGCACGGCGGAGGACGTGGACGCGGCGGTGGCGGCGGCGCGGGAGGCGCTGAAGAGGAACCGGGGCCGCGACTGGGCGCGCGCGCCGGGCGCCGTCCGGGCCAAGTACCTCCGCGCAATCGCGGCCAAGATAATCGAGAGGAAATCTGAGCTGGCTAGACTAGAGACGCTTGATTGTGGGAAGCCTCTTGATGAAGCAGCATGGGACATGGACGATGTTGCTGGATGCTTTGAGTACTTTGCAGATCTTGCAGAATCCTTGGACAAAAGGCAAAATGCACCTGTCTCTCTTCCAATGGAAAACTTTAAATGCTATCTTCGGAAAGAGCCTATCGGTGTAGTTGGGTTGATCACACCTTGGAACTATCCTCTCCTGATGGCAACATGGAAGGTAGCTCCTGCCCTGGCTGCTGGCTGTACAGCTGTACTAAAACCATCTGAATTGGCTTCCGTGACTTGTTTGGAGCTTGCTGATGTGTGTAAAGAGGTTGGTCTTCCTTCAGGTGTGCTAAACATAGTGACTGGATTAGGTTCTGAAGCCGGTGCTCCTTTGTCATCACACCCTGGTGTAGACAAGGTTGCATTTACTGGGAGTTATGANACTGGTAAAAAGATTATGGCTTCAGCTGCTCCTATGGTTAAGCCTGTTTCACTGGAACTTGGTGG AAAAGTCCTATAGTGGTGTTT ] [+] EMBL AB096083 [ GCGATCCCGCAGCGGCAGCTCTTCGTCGCCGGCGAGTGGCGCGCCCCCGCGCTCGGCCGCCGCCTCCCCGTCGTCAACCCCGCCACCGAGTCCCCCATCGGCGAGATCCCGGCGGGCACGGCGGAGGACGTGGACGCGGCGGTGGCGGCGGCGCGGGAGGCGCTGAAGAGGAACCGGGGCCGCGACTGGGCGCGCGCGCCGGGCGCCGTCCGGGCCAAGTACCTCCGCGCAATCGCGGCCAAGATAATCGAGAGGAAATCTGAGCTGGCTAGACTAGAGACGCTTGATTGTGGGAAGCCTCTTGATGAAGCAGCATGGGACATGGACGATGTTGCTGGATGCTTTGAGTACTTTGCAGATCTTGCAGAATCCTTGGACAAAAGGCAAAATGCACCTGTCTCTCTTCCAATGGAAAACTTTAAATGCTATCTTCGGAAAGAGCCTATCGGTGTAGTTGGGTTGATCACACCTTGGAACTATCCTCTCCTGATGGCAACATGGAAGGTAGCTCCTGCCCTGGCTGCTGGCTGTACAGCTGTACTAAAACCATCTGAATTGGCTTCCGTGACTTGTTTGGAGCTTGCTGATGTGTGTAAAGAGGTTGGTCTTCCTTCAGGTGTGCTAAACATAGTGACTGGATTAGGTTCTGAAGCCGGTGCTCCTTTGTCATCACACCCTGGTGTAGACAAGGTTGCATTTACTGGGAGTTATGAAACTGGTAAAAAGATTATGGCTTCAGCTGCTCCTATGGTTAAGCCTGTTTCACTGGAACTTGGTGGAAAAAGTCCTATAGTGGTGTTTGATGATGTTGATGTTGAAAAAGCTGTTGAGTGGACTCTCTTTGGTTGCTTTTGGACCAATGGCCA GATTTGCAGTGCAACATCGCGTCTTATTCTTCATAAAAAAATCGCTAAAGAATTTCAAGAAAGGATGGTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTAGTGAAGGACA GTATGAGAAGATTAAGCAATTTGTA TCTACCGCCAAAAGCCAAGGTGCTACCATTCTGACT GGTGGGG TTAGACCCAAGCATCTGGAGAAAGGTTTCTATA TTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCA TTGAATTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCG AGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGG AATTATCTGGGTGAACTGCT CGCAACCCTGCTTCTGCCAAGCTCCAT GGGGCGGGAACAAGCG CAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTC ] [+] EMBL AK060461 [ TTTGAGTACTTTGCAGATCTTGCAGAATCCTTGGACAAAAGGCAAAATGCACCTGTCTCTCTTCCAATGGAAAACTTTAAATGCTATCTTCGGAAAGAGCCTATCGGTGTAGTTGGGTTGATCACACCTTGGAACTATCCTCTCCTGATGGCAACATGGAAGGTAGCTCCTGCCCTGGCTGCTGGCTGTACAGCTGTACTAAAACCATCTGAATTGGCTTCCGTGACTTGTTTGGAGCTTGCTGATGTGTGTAAAGAGGTTGGTCTTCCTTCAGGTGTGCTAAACATAGTGACTGGATTAGGTTCTGAAGCCGGTGCTCCTTTGTCATCACACCCTGGTGTAGACAAGGTTGCATTTACTGGGAGTTATGAAACTGGTAAAAAGATTATGGCTTCAGCTGCTCCTATGGTTAAGCCTGTTTCACTGGAACTTGGTGGAAAAAGTCCTATAGTGGTGTTTGATGATGTTGATGTTGAAAAAGCTGTTGAGTGGACTCTCTTTGGTTGCTTTTGGACCAATGGCCA GATTTGCAGCGCAACATCGCGTCTTATTCTTCATAAAAAAATCGCTAAAGAATTTCAAGAAAGGATGGTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTAGTGAAGGACA GTATGAGAAGATTAAGCAATTTGTA TCTACCGCCAAAAGCCAAGGTGCTACCATTCTGACT GGTGGGG TTAGACCCAAGCATCTGGAGAAAGGTTTCTATA TTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCA TTGAATTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCG AGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGG AATTATCTGGGTGAACTGCT CGCAACCCTGCTTCTGCCAAGCTCCAT GGGGCGGGAACAAGCG CAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATA ] [+] EMBL CF329625 [ TCTTCCTTCAGGTGTGCTAAACATAGTGACTGGATTAGGTTCTGAAGCCGGTGCTCCTTTGTCATCACACCCTGGTGTAGACAAGGTTGCATTTACTGGGAGTTATGAAACTGGTAAAAAGATTATGGCTTCAGCTGCTCCTATGGTTAAGCCTGTTTCACTGGAACTTGGTGGAAAAAGTCCTATAGTGGTGTTTGATGATGTTGATGTTGAAAAAGCTGTTGAGTGGACTCTCTTTGGTTGCTTTTGGACCAATGGCCA GATTTGCAGTGCAACATCGCGTCTTATTCTTCATAAAAAAATCGCTAAAGAATTTCAAGAAAGGATGGTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTA ] [+] EMBL CF311479 [ CCTTTGTCATCACACCCTGGTGTAGACAAGGTTGCATTTACTGGGAGTTATGAAACTGGTAAAAAGATTATGGCTTCAGCTGCTCCTATGGTTAAGCCTGTTTCACTGGAACTTGGTGGAAAAAGTCCTATAGTGGTGTTTGATGATGTTGATGTTGAAAAAGCTGTTGAGTGGACTCTCTTTGGTTGCTTTTGGACCAATGGCCA GATTTGCAGTGCAACATCGCGTCTTATTCTTCATAAAAAAATCGCTAAAGAATTTCAAGAAAGGATGGTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTAGTGAAGGACA GTATGAGAAGATTAAGCAATTTGTA TCTACCGCCAAAAGCCAAGGTGCTACCATTCTGACTGGGTGGGG TTAGACCCAAGCATCTGGAGAAAGGTTTCTATA TTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCA TTGAATTGGCCAACGATACTCATTAT ] [-] EMBL CB655656 [ TGCAGTGCAACATCGCGTCTTATTCTTCATAAAAAAATCGCTAAAGAATTTCAAGAAAGGATGGTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTAGTGAAGGACA GTATGAGAAGATTAAGCAATTTGTA TCTACCGCCAAAAGCCAAGGTGCTACCATTCTGACT GGTGGGG TTAGACCCAAGCATCTGGAGAAAGGTTTCTATA TTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCA TTGAATTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCG AGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGG AATTATCTGGGTGAACTGCT CGCAACCCTGCTTCTGCCAAGCTCCAT GGGGCGGGAACAAGCG CAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGGGGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGA AAAAAAgga ] [+] EMBL BM037922 [ AAAGGATGG TCCATGGCCCAAAA TAAGG GTCAGAT CAC TGAAGAGGG TCCA GCT GCC TTGTTTATTAAGGACATGTAT AG AGATTA CAATTGGTATTCNACCCCCCTAAACCCAGGTGCTACCATTCTGACT GGTGGGGTTTAGACCCAAGCATCTGGAGAAAGGTTTCTATAGTTGAACCCAC ATCATTACTGATGTCGATACATCAATGC AATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCACTTGAATT GCCAACGATACTCATTATGGTCT GCTGGTGCTGTGCTTTCCGGTGACCGCG AGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGG AATTATCTGGGTGAACTGCT CGCAACCCTGCTTCTGCCAAGCTCCAT GGGGCGGGAACAAGCGCCAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCCAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTAAAAAAAA ] [+] EMBL OSC110 [ CATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTAGTGAAGGACA GTATGAGAAGATTAAGCAATTTGTA TCTACCGCCAAAAGCCAAGGTGCTACCATTCTGACT GGTGGGG TTAGACCCAAGCATCTGGAGAAAGGTTTCTATA TTGANCCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGANTTTAGCACTGAAGAAGAAGCCA TTGANTTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCGAAGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGG AATTATCTGGGTGACCTGCT CG AANCCTGCTTCTGCCAAGCTCCATGGGGGCGGGGAC ] [-] EMBL CF311480 [ TGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCA TTGAATTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCG AGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGG AATTATCTGGGTGAACTGCT CGCAACCCTGCTTCTGCCAAGCTCCAT GGGGCGGGAACAAGCG CAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTAAAAAAAAAAAAAA] [+] EMBL C98989 [ TGCCGGAAATTATCTGGGTGAACTGCTCCGCAACCCTGCTTCTGCCAAGCTCCAT GGGGCGGGAACAAGCG CANCGGCTTTGGACGCGAGCTCGNAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTAAAAA ] consensusID : consensus_13949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [AGGATGGTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTAGTGAAGGACAGTATGAGAAGATTAAGCAATTTGTATCTACCGCCAAAAGCCAAGGTGCTACCATTCTGACTGGTGGGGTTAGACCCAAGCATCTGGAGAAAGGTTTCTATATTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCATTGAATTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCGAGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGGAATTATCTGGGCGAACTGCTCGCAACCCTGCTTCTGCCAAGCTCCATGGGGCGGGAACAAGCGCAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGTCGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTTGTGAGAGTTGTACGACTTGTACTGATGGTTACGCGACAATTTGTGCATGGATAGTTTGTGTGCTTGTACCGGGGTTCTCTCCGTAAACAAAAAAAGG] [-] EMBL CB649659 [AGGATGGTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGGCCCGTTGTTAGTGAAGGACAGTATGAGAAGATTAAGCAATTTGTATCTACCGCCAAAAGCCAAGGTGCTACCATTCTGACTGGTGGGGTTAGACCCAAGCATCTGGAGAAAGGTTTCTATATTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCATTGAATTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCGAGCGATGCCAGAGATTAACTGAGGAGATCGATGCCGGAATTATCTGGGCGAACTGCTCGCAACCCTGCTTCTGCCAAGCTCCATGGGGCGGGAACAAGCGCAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGTCGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTTGTGAGAGTTGTACGACTTGTACTGATGGTTACGCGACAATTTGTGCATGGATAGTTTGTGTGCTTGTACCGGGGTTCTCTCCGTAAACAAAAAAAGG] consensusID : consensus_13949#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TGGCTGGTGCTGTGCTTTCCGGTGACCGCGAGCGATGCCAGATATTAACTGAGGAGATCGATGCCGGAATTATCTGGGTGAACTGCTCGCAACCCTGCTTTTGCCAAGCTCCATGGGGCGGGAACAAGCGCAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTTGTGAGAGTTGTACGACTTGTACTGATGGTTACGCGACAATTTGTGCAAAAAAAAAAAA] [-] EMBL CF329626 [TGGCTGGTGCTGTGCTTTCCGGTGACCGCGAGCGATGCCAGATATTAACTGAGGAGATCGATGCCGGAATTATCTGGGTGAACTGCTCGCAACCCTGCTTTTGCCAAGCTCCATGGGGCGGGAACAAGCGCAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGGGGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCATCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATCGATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTTGTGAGAGTTGTACGACTTGTACTGATGGTTACGCGACAATTTGTGCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 GCACTCCCTCTCCCACCACCACTCCACACCTGACACCACGCGGGCTGCCTCCATCGTCAT 60 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 CGATCCATCTCCGTATCTCTCACCGACCCCAAATCGCACAGCTCCAGCTCCTCCTCGATC 120 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 CCCGTCGCGATCGGCGAGATGGCCACGGCGATCCCGCAGCGGCAGCTCTTCGTCGCCGGC 180 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 GAGTGGCGCGCCCCCGCGCTCGGCCGCCGCCTCCCCGTCGTCAACCCCGCCACCGAGTCC 240 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 CCCATCGGCGAGATCCCGGCGGGCACGGCGGAGGACGTGGACGCGGCGGTGGCGGCGGCG 300 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 CGGGAGGCGCTGAAGAGGAACCGGGGCCGCGACTGGGCGCGCGCGCCGGGCGCCGTCCGG 360 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 GCCAAGTACCTCCGCGCAATCGCGGCCAAGATAATCGAGAGGAAATCTGAGCTGGCTAGA 420 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 CTAGAGACGCTTGATTGTGGGAAGCCTCTTGATGAAGCAGCATGGGACATGGACGATGTT 480 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 GCTGGATGCTTTGAGTACTTTGCAGATCTTGCAGAATCCTTGGACAAAAGGCAAAATGCA 540 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 CCTGTCTCTCTTCCAATGGAAAACTTTAAATGCTATCTTCGGAAAGAGCCTATCGGTGTA 600 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 GTTGGGTTGATCACACCTTGGAACTATCCTCTCCTGATGGCAACATGGAAGGTAGCTCCT 660 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 GCCCTGGCTGCTGGCTGTACAGCTGTACTAAAACCATCTGAATTGGCTTCCGTGACTTGT 720 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 TTGGAGCTTGCTGATGTGTGTAAAGAGGTTGGTCTTCCTTCAGGTGTGCTAAACATAGTG 780 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 ACTGGATTAGGTTCTGAAGCCGGTGCTCCTTTGTCATCACACCCTGGTGTAGACAAGGTT 840 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 GCATTTACTGGGAGTTATGAAACTGGTAAAAAGATTATGGCTTCAGCTGCTCCTATGGTT 900 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 AAGCCTGTTTCACTGGAACTTGGTGGAAAAAGTCCTATAGTGGTGTTTGATGATGTTGAT 960 consensus_13949#1 ------------------------------------------------------------ consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 GTTGAAAAAGCTGTTGAGTGGACTCTCTTTGGTTGCTTTTGGACCAATGGCCAGATTTGC 1020 consensus_13949#1 ------------------------------------------------------AGGATG 6 consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 AGTGCAACATCGCGTCTTATTCTTCATAAAAAAATCGCTAAAGAATTTCAAGAAAGGATG 1080 consensus_13949#1 GTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGG 66 consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 GTTGCATGGGCCAAAAATATTAAGGTGTCAGATCCACTTGAAGAGGGTTGCAGGCTTGGG 1140 consensus_13949#1 CCCGTTGTTAGTGAAGGACAGTATGAGAAGATTAAGCAATTTGTATCTACCGCCAAAAGC 126 consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 CCCGTTGTTAGTGAAGGACAGTATGAGAAGATTAAGCAATTTGTATCTACCGCCAAAAGC 1200 consensus_13949#1 CAAGGTGCTACCATTCTGACTGGTGGGGTTAGACCCAAGCATCTGGAGAAAGGTTTCTAT 186 consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 CAAGGTGCTACCATTCTGACTGGTGGGGTTAGACCCAAGCATCTGGAGAAAGGTTTCTAT 1260 consensus_13949#1 ATTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTT 246 consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 ATTGAACCCACAATCATTACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTT 1320 consensus_13949#1 TTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCATTGAATTGGCC 306 consensus_13949#2 ------------------------------------------------------------ consensus_13949#0 TTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTGAAGAAGAAGCCATTGAATTGGCC 1380 consensus_13949#1 AACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCGAGCGATGCCAG 366 consensus_13949#2 -------------------TGGCTGGTGCTGTGCTTTCCGGTGACCGCGAGCGATGCCAG 41 consensus_13949#0 AACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCGAGCGATGCCAG 1440 ***************************************** consensus_13949#1 AGATTAACTGAGGAGATCGATGCCGGAATTATCTGGGCGAACTGCTCGCAACCCTGCTTC 426 consensus_13949#2 ATATTAACTGAGGAGATCGATGCCGGAATTATCTGGGTGAACTGCTCGCAACCCTGCTTT 101 consensus_13949#0 AGATTAACTGAGGAGATCGATGCCGGAATTATCTGGGTGAACTGCTCGCAACCCTGCTTC 1500 * *********************************** ********************* consensus_13949#1 TGCCAAGCTCCATGGGGCGGGAACAAGCGCAGCGGCTTTGGACGCGAGCTCGGAGAAGGG 486 consensus_13949#2 TGCCAAGCTCCATGGGGCGGGAACAAGCGCAGCGGCTTTGGACGCGAGCTCGGAGAAGGG 161 consensus_13949#0 TGCCAAGCTCCATGGGGCGGGAACAAGCGCAGCGGCTTTGGACGCGAGCTCGGAGAAGGG 1560 ************************************************************ consensus_13949#1 GGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGG 546 consensus_13949#2 GGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGG 221 consensus_13949#0 GGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGGAGTACGCCTCCGATGAGCCGTGG 1620 ************************************************************ consensus_13949#1 GGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCA 606 consensus_13949#2 GGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCA 281 consensus_13949#0 GGATGGTACAAATCCCCTTCCAAGCTGTAATGTAATATGCGCATACGCATGACACGCCCA 1680 ************************************************************ consensus_13949#1 TCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGTCGGGATGGACTTTGTGCATATC 666 consensus_13949#2 TCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATC 341 consensus_13949#0 TCTGTTCTGATCGTTTGGAATAAGAGGCCATAGTATGACGGGATGGACTTTGTGCATATC 1740 ************************************* ********************** consensus_13949#1 GATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTTGT 726 consensus_13949#2 GATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTTGT 401 consensus_13949#0 GATGTTTGATTTGCCATGTGCTGAGCCTGGAAATAAAAAAGGTTATAGTTGGAGACTAAA 1800 ********************************************************* consensus_13949#1 GAGAGTTGTACGACTTGTACTGATGGTTACGCGACAATTTGTGCATGGATAGTTTGTGTG 786 consensus_13949#2 GAGAGTTGTACGACTTGTACTGATGGTTACGCGACAATTTGTGCAAAAAAAAAAAA---- 457 consensus_13949#0 AAAAAAAAAAA------------------------------------------------- 1811 * * * consensus_13949#1 CTTGTACCGGGGTTCTCTCCGTAAACAAAAAAAGG 821 consensus_13949#2 ----------------------------------- consensus_13949#0 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||