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Oryza sativa
cluster # 13968 cluster # 13968       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13968#0 length = 914 sequences # 12  
consensus_13968#1 length = 710 sequences # 1  
consensus_13968#2 length = 691 sequences # 1  

consensusID : consensus_13968#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 914
fasta sequence
                              [ATCCTCTCTCCCCCAATTCCCCATCCGCTGCTCATCAGTCGCACGTACCACACCAGCATCCTCGCACGGTCGCGACCCCTCCCGCACCTCACCAGGTAGAGAGAGAGACGACGGCGGTGGTGGCGGGATGTTCCTGCGGCGGATCCTGAGCGGCGGGGGAGGGGTGGCGGCGCTGCGGGCGGCGCGCGCCGTG-AAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAG-GGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATC-GGCTGCGGCCAGGTCGAGGAGCTCAT-CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAAT-GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGG-T-GAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGA-TCTACCA-TTTGCACC-ATTTT-GCTGCGT-GGAGTAGACTATA-GATT-AGTTTCATGTGTTCTTTGCCAGCAATA-TTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTACCGAGCACTA-CAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCATTTTCTTTTTCTCTGTATTAATCTATGGTGACGAAAAGCAAACGTTTTACTGTTAAAAAAAAA]

[+] EMBL C27790               [ATCCTCTCTCCCCCAATTCCCCATCCGCTGCTCATCAGTCGCACGTACCACACCAGCATCCTCGCACGGTCGCGACCCCTCCCGCACCTCACCAGGTAGAGAGAGAGACGACGGCGGTGGTGGCGGGATGTTCCTGCGGCGGATCCTGAGCGGCGGGGGAGGGGTGGNGGCGCTGCGGGCGGCGCGCG CGTGNAAGGAGACGACGGGGATCGTGGGGCTNGAGGTGGTGCCCAACGCGCGGNAGGTGCTCGTNGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGNCGTCCCCAAGGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK068580             [                                         CACGTACCACACCAGCATCCTCGCACGGTCGCGACCCCTCCCGCACCTCACCAGGTAGAGAGAGAGACGACGGCGGTGGTGGCGGGATGTTCCTGCGGCGGATCCTGAGCGGCGGGGGAGGGGTGGCGGCGCTGCGGGCGGCGCGCGCCGTG AAGGAGACGACGGGGCTCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAG GGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATC GGCTGCGGCCAGGTCGAGGAGCTCAT CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAAT GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGG T GAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGA TCTACCA TTTGCACC ATTTT GCTGCGT GGAGTAGACTATA GATT AGTTTCATGTGTTCTTTGCCAGCAATA TTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTACCGAGCACTA CAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCATTTTCTTTTTCTCTGTATTAATCTATGGTGACGAAAAGCAAACG                   ]
[+] EMBL C28819               [                                                            ctatcttgnTCGCGACCCCTCCCGCACCTCACCAGGTAGAGAGAGAGACGACGGCGGTNGTNGCGGGATGTTCCTGCGGCGGATCCTNAGCGGCGGGGGAGGGGTNGCGGCGCTGCGGNCGGCGCGCGTCCTA NAGGAGACGACGGGGATCGTGGGGCTGGAGGTNGTNCCCAACGCGCGGGAGGTNCTCGTCGGCCTCTACACCCNCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGA GAGTGGCTACCGCAA GCCGTCGAGTCCTTCACCCGCCACCGCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CK085281             [                                                                                 CCGCACCTCACCAGGTAGAGAGAGAGACGACGGCGGTGGTGGCGGGATGTTCCTGCGGCGGATCCTGAGCGGCGGGGGAGGGGTGGCGGCGCTGCGGGCGGCGCGCGCCGTG AAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAG GGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATC GGCTGCGGCCAGGTCGAGGAGCTCAT CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAAT GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB680673             [                                                                                                                     TGGTGGCGGGATGTTCCTGCGGCGGATCCTGAGCGGCGGGGGAGGGGTGGCGGCGCTGCGGGCGGCGCGCGCCGTG AAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAG GGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATC GGCTGCGGCCAGGTCGAGGAGCTCAT CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAAT GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGG T GAGTCTCCTCCTCGAGTGAAACCATAAAGACGTGAACTCTCCAAGA TCTACCA TTTGCACC ATTTT GCTGCGT GGAGTACACTATA GATT AGTTTCATGTGTTCTTTGCCAGCAATA TTTGCTTGGTTGTTCCCAGCAGAATAAAGTTCTACCGAGCACTACCAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCATTTTCTTTTTCTCTGGATTAATCTATGGGGACGAAAgaa                        ]
[-] EMBL CB681346             [                                                                                                                            GGGATGTTCCTGCGGCGGATCCTGAGCGGCGGGGGAGGGGTGGCGGCGCTGCGGGCGGCGCGCGCC TGAAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAG GGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATC GGCTGCGGCCAGGTCGAGGAGCTCAT CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAAT GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGG T GAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGA TCTACCA TTTGCACC ATTTT GCTGCGT GGAGTAGACTATA GATT AGTTTCATGTGTTCTTTGCCAGCAATA TTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTACCGAGCACTA CAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCAAGGTCTTTTTCTCTGTATTAATCTATGGTGACGAAAAAAAAAgga                  ]
[-] EMBL CB680674             [                                                                                                                                                                      GCGGCGCTTCGGGCGGCGCGCGCCGTG AAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAG GGCTACCGCAAGGCCGTTGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATC GGCTGCGGCCAGGTCGAGGAGCTCAT CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAAT GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATTTGATCCTGCTTTGCAGGG T GAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGA TTTACCA TTTGCACC ATTTT GCTGCGT GGAGTAGACTATA GATT AGTTTCATGTGTTCTTTGCCAGCAATA TTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTTCCGAGCACTA CAAAGA                                                                                                                             ]
[+] EMBL AU092682             [                                                                                                                                                                                                                                                                                              gnCCGTCCCCAAGGACAAG GGCTACCGCAAGGCCGTCGAGTCNTTCACCCGCCACCGCTTCCAGATCTGCCAGGAGAAGGACGACTGGAAGCGCATCGAGGACCGCATCGGGCTGCGGCCAGGTCGAGGAGCTCAT CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAAT GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGG T GAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGA TCTACCA TTTGCACC ATTTT GCTGCGT GGAGTAGACTATA GATT AGTTTCATGTGTTCTTTGCCAGCAATA TTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTACCGAGCACTA CAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCATTTTCTTTTTCTCTGTATTAATCTATGGTGACGAAAAGCAAACGTTNTACTGTNAAAAA    ]
[+] EMBL C74108               [                                                                                                                                                                                                                                                                                                                                                                     CAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATC GGCTGCGGCCAGGTCGAGGAGCTCAT CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAAT GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGGTT GAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGATTTTACCANTTTGCACCAATTTTGGCTGCGTGGGAGTAGACTATAGGATTAAGTTTCATGTGTACTTTGGCAGCAATATTTTGCTTGGTTGTTNCCAGCGGAATAAAGTTTTACCGGGCACTAac                                                                                                                                  ]
[+] EMBL AU165980             [                                                                                                                                                                                                                                                                                                                                                                      AGGAGNAGGACGACTGGAAGCGCATCGAGGACCGCATC GGCTGCGG CAGGTCGAGGAGCTCAT CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAAT GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGG T GAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGA TCTACCA TTTGCACC ATTTT GCTGCGT GGAGTAGACTATA GATT AGTTTCATGTGTTCTTTGCCAGCAATA TTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTACCGAGCACTA CAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCATTTTCTTTTTCTCTGTATTAATCTATGGTGACGAAAAGCAAACGTTTTACTGTTAAAAAAAAA]
[+] EMBL AU093112             [                                                                                                                                                                                                                                                                                                                                                                                                                                    CATCCGAGAAGGCCCAGGACGAGNTCAAGCTCATCGCCAANATG TCGAATGGGGACCCATGGGGTGTTCCTGATGNCTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCNGAACATGTTCCGCAGCATCGGCCTGTTGCACTCCNTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGG T GAGTCTCCTCCTCAAGTGAANCCATAAAGACGTGAACTCTCCAAGA TCTACCA TTTGCACC ATTTT GCTGCGT GGAGTAGNCTATA GATT AGTTTCATGTGTTCTTTGCCAGCAATA TTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTACCGAGCACTA CAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCATTTTCTTTTTCTCTGTATTAATCTATGGTGACGAAAAGCAAACGTTTTACTGTTAAAAA    ]
[+] EMBL AU058145             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGC GTG TNGAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGA TCTACCA TTTGCACC ATTTT GCTGCGT GGAGTAGACTATA GATT AGTTTCATGTGTTCTTTGCCAGCANTA TTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTACCGAGCACTA CAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCATTTTCTTTTTCTCTGTATTAATCTATGGTGACGGAAAGCAAACGTTTTACTGTTAAAA     ]


>consensus_13968#0 ATCCTCTCTCCCCCAATTCCCCATCCGCTGCTCATCAGTCGCACGTACCACACCAGCATC CTCGCACGGTCGCGACCCCTCCCGCACCTCACCAGGTAGAGAGAGAGACGACGGCGGTGG TGGCGGGATGTTCCTGCGGCGGATCCTGAGCGGCGGGGGAGGGGTGGCGGCGCTGCGGGC GGCGCGCGCCGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCG GGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGA CGAGGGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGA GGAGGACGACTGGAAGCGCATCGAGGACCGCATCGGCTGCGGCCAGGTCGAGGAGCTCAT CGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAATGGGACCCATGGGG TGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGT TCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAA ATCTGATCCTGCTCTGCAGGGTGAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAACT CTCCAAGATCTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTATAGATTAGTTTCAT GTGTTCTTTGCCAGCAATATTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTACCGAGCA CTACAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATAC TGTGGACATCATTTTCTTTTTCTCTGTATTAATCTATGGTGACGAAAAGCAAACGTTTTA CTGTTAAAAAAAAA



consensusID : consensus_13968#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence
                              [CGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAGGGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATCGGCTGCGGCCAGGTCGAGGAGCTCATCGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAATGGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGGTGAGTCTCCTCCTCAAGTGAAGCCATAAAGACGTGAACTCTCCAAGATCTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTATAGATTAGTTTCATGTGTTCTTTGCCAGCAATATTTGCTTGGTGTTCCAAGCAGAATAAAGTTCTACCGAGTACTACAAAGAATGTGTTTAAACTGAGTGCTTTCACACAGTGAAATGTGTGATNATTGATACTGTGGACATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNAAACT]

[+] EMBL BE039962             [CGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAGGGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATCGGCTGCGGCCAGGTCGAGGAGCTCATCGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAATGGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTGCTCTGCAGGGTGAGTCTCCTCCTCAAGTGAAGCCATAAAGACGTGAACTCTCCAAGATCTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTATAGATTAGTTTCATGTGTTCTTTGCCAGCAATATTTGCTTGGTGTTCCAAGCAGAATAAAGTTCTACCGAGTACTACAAAGAATGTGTTTAAACTGAGTGCTTTCACACAGTGAAATGTGTGATNATTGATACTGTGGACATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNAAACT]


>consensus_13968#1 CGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCT CGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAGGGCTA CCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGA CTGGAAGCGCATCGAGGACCGCATCGGCTGCGGCCAGGTCGAGGAGCTCATCGAGGAGGC CCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAATGGGACCCATGGGGTGTTCCTGA TGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCCGCAGCA TCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCC TGCTCTGCAGGGTGAGTCTCCTCCTCAAGTGAAGCCATAAAGACGTGAACTCTCCAAGAT CTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTATAGATTAGTTTCATGTGTTCTTT GCCAGCAATATTTGCTTGGTGTTCCAAGCAGAATAAAGTTCTACCGAGTACTACAAAGAA TGTGTTTAAACTGAGTGCTTTCACACAGTGAAATGTGTGATNATTGATACTGTGGACATC ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNAAACT



consensusID : consensus_13968#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence
                              [GGCGCTTCGGGCGGCGCCGCGCCGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTTGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAGGGCTACTGCAAGGCCGTTGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATCGGTTGCGGCCAGGTCGAGGAGCTCATCGAGGAGGCCCAGGACGAGCTCAAGCTCATTGCCAAGATGATCGAATGGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCTGCAGCATTGGCCTGTTGCACTCCCTGAGGAGTTTTTCAAGACACTAGATGCTGTCAAATTTGATCCTGCTTTGCAGGGTGAGTTTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGATTTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTATAGATTAGTTTCATGTGTTGTTTGCCAGCAATATTTGGTTGGTTGTTTCAAGCAGAATAAAGTTCTTCCGAGCATTACAAAGAATGTGTTTAAACAGAGTGGCCACCCCTCCCCAAACGCTCAGGATCCGCCGCAGGAACATACAGGCACCA]

[-] EMBL CB681345             [GGCGCTTCGGGCGGCGCCGCGCCGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGCGGGAGGTGCTTGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGGACGAGGGCTACTGCAAGGCCGTTGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATCGGTTGCGGCCAGGTCGAGGAGCTCATCGAGGAGGCCCAGGACGAGCTCAAGCTCATTGCCAAGATGATCGAATGGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATGTTCTGCAGCATTGGCCTGTTGCACTCCCTGAGGAGTTTTTCAAGACACTAGATGCTGTCAAATTTGATCCTGCTTTGCAGGGTGAGTTTCCTCCTCAAGTGAAACCATAAAGACGTGAACTCTCCAAGATTTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTATAGATTAGTTTCATGTGTTGTTTGCCAGCAATATTTGGTTGGTTGTTTCAAGCAGAATAAAGTTCTTCCGAGCATTACAAAGAATGTGTTTAAACAGAGTGGCCACCCCTCCCCAAACGCTCAGGATCCGCCGCAGGAACATACAGGCACCA]


>consensus_13968#2 GGCGCTTCGGGCGGCGCCGCGCCGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGG TGCCCAACGCGCGGGAGGTGCTTGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGG CCGTCCCCAAGGACGAGGGCTACTGCAAGGCCGTTGAGTCCTTCACCCGCCACCGCCTCC AGATCTGCCAGGAGGAGGACGACTGGAAGCGCATCGAGGACCGCATCGGTTGCGGCCAGG TCGAGGAGCTCATCGAGGAGGCCCAGGACGAGCTCAAGCTCATTGCCAAGATGATCGAAT GGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTA TCCCGAAACATGTTCTGCAGCATTGGCCTGTTGCACTCCCTGAGGAGTTTTTCAAGACAC TAGATGCTGTCAAATTTGATCCTGCTTTGCAGGGTGAGTTTCCTCCTCAAGTGAAACCAT AAAGACGTGAACTCTCCAAGATTTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTAT AGATTAGTTTCATGTGTTGTTTGCCAGCAATATTTGGTTGGTTGTTTCAAGCAGAATAAA GTTCTTCCGAGCATTACAAAGAATGTGTTTAAACAGAGTGGCCACCCCTCCCCAAACGCT CAGGATCCGCCGCAGGAACATACAGGCACCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13968#0      ATCCTCTCTCCCCCAATTCCCCATCCGCTGCTCATCAGTCGCACGTACCACACCAGCATC 60
consensus_13968#1      ------------------------------------------------------------
consensus_13968#2      ------------------------------------------------------------
                                                                                   

consensus_13968#0      CTCGCACGGTCGCGACCCCTCCCGCACCTCACCAGGTAGAGAGAGAGACGACGGCGGTGG 120
consensus_13968#1      ------------------------------------------------------------
consensus_13968#2      ------------------------------------------------------------
                                                                                   

consensus_13968#0      TGGCGGGATGTTCCTGCGGCGGATCCTGAGCGGCGGGGGAGGGGTGGCGGCGCTGCGGGC 180
consensus_13968#1      ------------------------------------------------------------
consensus_13968#2      ------------------------------------------------GGCGCTTCGGGC 12
                                                                                   

consensus_13968#0      GGCGC-GCGCCGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGC 239
consensus_13968#1      ----------CGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGC 50
consensus_13968#2      GGCGCCGCGCCGTGAAGGAGACGACGGGGATCGTGGGGCTGGAGGTGGTGCCCAACGCGC 72
                                 **************************************************

consensus_13968#0      GGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGG 299
consensus_13968#1      GGGAGGTGCTCGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGG 110
consensus_13968#2      GGGAGGTGCTTGTCGGCCTCTACACCCGCACCCTCAAGGAGATCGAGGCCGTCCCCAAGG 132
                       ********** *************************************************

consensus_13968#0      ACGAGGGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGG 359
consensus_13968#1      ACGAGGGCTACCGCAAGGCCGTCGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGG 170
consensus_13968#2      ACGAGGGCTACTGCAAGGCCGTTGAGTCCTTCACCCGCCACCGCCTCCAGATCTGCCAGG 192
                       *********** ********** *************************************

consensus_13968#0      AGGAGGACGACTGGAAGCGCATCGAGGACCGCATCGGCTGCGGCCAGGTCGAGGAGCTCA 419
consensus_13968#1      AGGAGGACGACTGGAAGCGCATCGAGGACCGCATCGGCTGCGGCCAGGTCGAGGAGCTCA 230
consensus_13968#2      AGGAGGACGACTGGAAGCGCATCGAGGACCGCATCGGTTGCGGCCAGGTCGAGGAGCTCA 252
                       ************************************* **********************

consensus_13968#0      TCGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAATGGGACCCATGGG 479
consensus_13968#1      TCGAGGAGGCCCAGGACGAGCTCAAGCTCATCGCCAAGATGATCGAATGGGACCCATGGG 290
consensus_13968#2      TCGAGGAGGCCCAGGACGAGCTCAAGCTCATTGCCAAGATGATCGAATGGGACCCATGGG 312
                       ******************************* ****************************

consensus_13968#0      GTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATG 539
consensus_13968#1      GTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATG 350
consensus_13968#2      GTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCCGAAACATG 372
                       ************************************************************

consensus_13968#0      TTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCA 599
consensus_13968#1      TTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCA 410
consensus_13968#2      TTCTGCAGCATTGGCCTGTTGCACTCCCTGAGGAGTTTTTCAAGACACTAGATGCTGTCA 432
                       *** ******* ************************* **********************

consensus_13968#0      AATCTGATCCTGCTCTGCAGGGTGAGTCTCCTCCTCAAGTGAAACCATAAAGACGTGAAC 659
consensus_13968#1      AATCTGATCCTGCTCTGCAGGGTGAGTCTCCTCCTCAAGTGAAGCCATAAAGACGTGAAC 470
consensus_13968#2      AATTTGATCCTGCTTTGCAGGGTGAGTTTCCTCCTCAAGTGAAACCATAAAGACGTGAAC 492
                       *** ********** ************ *************** ****************

consensus_13968#0      TCTCCAAGATCTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTATAGATTAGTTTCA 719
consensus_13968#1      TCTCCAAGATCTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTATAGATTAGTTTCA 530
consensus_13968#2      TCTCCAAGATTTACCATTTGCACCATTTTGCTGCGTGGAGTAGACTATAGATTAGTTTCA 552
                       ********** *************************************************

consensus_13968#0      TGTGTTCTTTGCCAGCAATATTTGCTTGGTTGTTCCAAGCAGAATAAAGTTCTACCGAGC 779
consensus_13968#1      TGTGTTCTTTGCCAGCAATATTTGCTTGGT-GTTCCAAGCAGAATAAAGTTCTACCGAGT 589
consensus_13968#2      TGTGTTGTTTGCCAGCAATATTTGGTTGGTTGTTTCAAGCAGAATAAAGTTCTTCCGAGC 612
                       ****** ***************** ***** *** ****************** ***** 

consensus_13968#0      ACTACAAAGAATGTGTTTAAACTGAGTGCTTCCACACAGTGAAATGTGTGATATTTGATA 839
consensus_13968#1      ACTACAAAGAATGTGTTTAAACTGAGTGCTTTCACACAGTGAAATGTGTGATNATTGATA 649
consensus_13968#2      ATTACAAAGAATGTGTTTAAACAGAGTGGCCACCCCTCCCCAAACGCTCAGGATCCGCCG 672
                       * ******************** *****    * *      *** *          *   

consensus_13968#0      CTGTGGACATCATTTTCTTTTTCTCTGTATTAATCTATGGTGACGAAAAGCAAACGTTTT 899
consensus_13968#1      CTGTGGACATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNAA-- 707
consensus_13968#2      CAG-GAACAT-ACAGGCACCA--------------------------------------- 691
                       * * * **** *                                                

consensus_13968#0      ACTGTTAAAAAAAAA 914
consensus_13968#1      ACT------------ 710
consensus_13968#2      ---------------
                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)