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Oryza sativa
cluster # 13981 cluster # 13981       Sequences # 14       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13981#0 length = 1361 sequences # 10  
consensus_13981#1 length = 802 sequences # 2  
consensus_13981#2 length = 237 sequences # 1  
consensus_13981#3 length = 192 sequences # 1  

consensusID : consensus_13981#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1361
fasta sequence
                              [ACCATACCAGTAGCAGCTAATTAAGTGGGTGGGTTCGCTTGCTTGCTTTGCTTTTGCTTGGAGACGGGAGCGACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCGCGAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGGCCG-AGGGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCACGGCGGCGGCGCGGGAGGGAGCAACGA-GGAGGAGGAGGCGTCGCCGCCGCCCGGCGGTGGCTCGGCTACGGGGTCGGCGGGCCGCCGGCCGAGGGGGAGGCCGCCGGGCTCCAAGAACAAGCCGAAGCCGCCCGTCGTGGTGACGCGGGAGAGCCCCAACGCGATGCGTTCCCACGTGCTGGAGATCGCCAGCGGCGCCGACATCGTCGAGGCCATCGCGGGCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCCGTGCTCAGCGGGAGCGGCGCCGTCACCAACGTCACGCT-CCGGCAGCCCGCGGGGACTGGGGCCGCCGCCGTCGCGCTGC-GGGGGAGGTTCGAGATATTGTCCATGTCTGGCGCCTTCCTCCCGGCGCCGGCGCCGCCAGGGGCCACGGGGCTCGCCGTGTACCTCGCCGGCGGGCAGGGGCAGGTGGTGGGTGGGAG-CGTCATGGGGGA-GCTGATCGCGTCGGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAGGCTGCCGCTGGACCAGGAAGGCGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCGCGCAGATGGAGCAGCAGAGCAGCGGAGGCGC--CGTCGTGC-CCCCGCCGATGT-ACGCCGCCGTCCAGCAGACGCCGCCGCAC-GACATGTTCGGGCAGTGGGGGCAT-GCAGCGGTGGCTCGGCCGCCGCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCACTTGCTCCTTCACTAGCTATCTGCTCGATCATAAGCTCTTGCATCTTGTTCTTCGCAAGCACCAATTCACGCTTGTGTCAATTGCTTGGTCATTTTGCATACTTTGGACTACTCGATCACTACAAAATATTTCTTGAGTTTTACTCCCTGCATGCACTGCTCAATGCGTGATTATGCCTGAATACACTAA]

[+] EMBL AK061579             [ACCATACCAGTAGCAGCTAATTAAGTGGGTGGGTTCGCTTGCTTGCTTTGCTTTTGCTTGGAGACGGGAGCGACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCGCGAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGGCCG AGGGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCACGGCGGCGGCGCGGGAGGGAGCAACGA GGAGGAGGAGGCGTCGCCGCCGCCCGGCGGTGGCTCGGCTACGGGGTCGGCGGGCCGCCGGCCGAGGGGGAGGCCGCCGGGCTCCAAGAACAAGCCGAAGCCGCCCGTCGTGGTGACGCGGGAGAGCCCCAACGCGATGCGTTCCCACGTGCTGGAGATCGCCAGCGGCGCCGACATCGTCGAGGCCATCGCGGGCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCCGTGCTCAGCGGGAGCGGCGCCGTCACCAACGTCACGCT CCGGCAGCCCGCGGGGACTGGGGCCGCCGCCGTCGCGCTGC GGGGGAGGTTCGAGATATTGTCCATGTCTGGCGCCTTCCTCCCGGCGCCGGCGCCGCCAGGGGCCACGGGGCTCGCCGTGTACCTCGCCGGCGGGCAGGGGCAGGTGGTGGGTGGGAG CGTCATGGGGGA GCTGATCGCGTCGGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAGGCTGCCGCTGGACCAGGAAGGCGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCGCGCAGATGGAGCAGCAGAGCAGCGGAGGCGC  CGTCGTGC CCCCGCCGATGT ACGCCGCCGTCCAGCAGACGCCGCCGCAC GACATGTTCGGGCAGTGGGGGCAT GCAGCGGTGGCTCGGCCGCCGCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATC                                                                                                                                                                                                                                                                        ]
[+] EMBL AK106069             [            GCAGCTAATTAAGTGGGTGGGTTCGCTTGCTTGCTTTGCTTTTGCTTGGAGACGGGAGCGACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCGCGAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGGCCG AGGGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCACGGCGGCGGCGCGGGAGGGAGCAACGA GGAGGAGGAGGCGTCGCCGCCGCCCGGCGGTGGCTCGGCTACGGGGTCGGCGGGCCGCCGGCCGAGGGGGAGGCCGCCGGGCTCCAAGAACAAGCCGAAGCCGCCCGTCGTGGTGACGCGGGAGAGCCCCAACGCGATGCGTTCCCACGTGCTGGAGATCGCCAGCGGCGCCGACATCGTCGAGGCCATCGCGGGCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCCGTGCTCAGCGGGAGCGGCGCCGTCACCAACGTCACGCT CCGGCAGCCCGCGGGGACTGGGGCCGCCGCCGTCGCGCTGC GGGGGAGGTTCGAGATATTGTCCATGTCTGGCGCCTTCCTCCCGGCGCCGGCGCCGCCAGGGGCCACGGGGCTCGCCGTGTACCTCGCCGGCGGGCAGGGGCAGGTGGTGGGTGGGAG CGTCATGGGGGA GCTGATCGCGTCGGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAGGCTGCCGCTGGACCAGGAAGGCGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCGCGCAGATGGAGCAGCAGAGCAGCGGAGGCGC  CGTCGTGC CCCCGCCGATGT ACGCCGCCGTCCAGCAGACGCCGCCGCAC GACATGTTCGGGCAGTGGGGGCAT GCAGCGGTGGCTCGGCCGCCGCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCACTTGCTCCTTCACTAGCTATCTGCTCGATCATAAGCTCTTGCATCTTGTTCTTCGCAAGCACCAATTCACGCTTGTGTCAATTGCTTGGTCATTTTGCATACTTTGGACTACTCGATCACTACAAAATATTTCTTGAGTTTTACTCCCTGCATGCACTGCTCAATGCGTGATTATGCCTGAATACACTAA]
[+] EMBL CA755196             [                       AGTGGGTGGGTTCGCTTGCTTGCTTTGCTTTTGCTTGGAGACGGGAGCGACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCGCGAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGGCCG AGGGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCACGGCGGCGGCGCGGGAGGGAGCAACGA GGAGGAGGAGGCGTCGCCGCCGCCCGGCGGTGGCTCGGCTACGGGGTCGGCGGGCCGCCGGCCGAGGGGGAGGCCGCCGGGCTCCCAGAACAAGCCGAAGCCGCCCGTCGTGGTGACGCGGGAGAGCCCC ACGCGATGCGTTCCCACGTGCTGGAGATCGCCAGCGGCGCCCACATCGTCGAGGGCATCGCGGGCTTCTCCCG CGCCAGCAGCGGGGCGTCTCCGTGCTCCACGGGAGCGGGGCCGTCACCCACGTCACGCTCCCGGCAG CCGCGGGGACTGGGCGCGCCGCC TCCCGCTGCGGGGGGAAGTTCGAGATAATGTCCATGTCTGGGGGCTTCCTCCGGNGGCCGGGGCCGCC GGGGCCACCGGGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU068103             [                        GTGGGTGGGTTCGCTTGCTTGCTTTGCTTTTGCTTGGAGACGGGAGCGACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTNCGACTTTCCGNCCGCGAAAATAGTAGGGCTGGCAAACCGGTGGCCGNCCGGCGATCCGGCCG ANGGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCANGGGTACTCCCACGGCGGCNGCGCGGGAGGGAGCAACGAGGGATGAGGAGGCGTCGCCGCCGCCCGGC GTGGCTCGGCTACGGNGTCTGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSR23501A            [                        GTGGGTGGGTTCGCTTGCTTGCTTTGCTTTTGCTTGGAGACGGGAGCNACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCGCGAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGGCCGAAGGGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCANGGCGGCGGCGCGGGAGGGAGCAACGA GGAGGAGGAGGCGTCGCCGCCGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB638355             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAGGTGGTGGGTGGGAG CGTCATGGGGGA GCTGATCGCGTCGGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAGGCTGCCGCTGGACCAGGAAGGCGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCGCGCAGATGGAGCAGCAGAGCAGCGGAGGCGC  CGTCGTGC CCCCGCCGATGT ACGCCGCCGTCCAGCAGACGCCGCCGCAC GACATGTTCGGGCAGTGGGGGCAT GCAGCGGTGGCTCGGCCGCCGCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCACTTGCTCCT                                                                                                                                                                                     ]
[+] EMBL BI806356             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gtGAGTCTTCATGGGGGATCCTGTTCGCGTCGGGCCCCGTCATGGTGATC C GCCACGTTCGGCAACGCCACGTACGAGAGGCTCCGGCTGGACCAGGAAGGCGAGGAGGGCCCGGTGCTGTCCGGGTCGGAGGGC CACCCGCGCAGATGGGACA CAGANCA CGGAGGCGCCACGTCGTGCACCCCGCCGATGTGACGCCCCCGTCCAGCAGACGCCGCCGCACAGACATGTTCGGGCAGTGGGGGCATAGCAGC GTGGCTC GCCNCCGCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTA CCTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATC GCAGTGGTTGCTCA                                                                                                                                                                                              ]
[+] EMBL BI808775             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAT GGGGA CCTGATCGCGTCGGGCCCCGTCATGGTGATCGC GCCACGTTCGGC ACGCCACGTACGAGAGGCT CCGCTGGACCAGGAAGGCGAGGAGGGC CCGTGCTGTCCGGGTCGGAGGGCGCCGCCGCGCAGATGGAGCAGCAGAGCAGCGGAGGCGC  CGTCGTGC CCCCGCCGATGT ACGCCGCCGTCCAGCAGACGCCGCCGCAC GACATGTTCGGGCAGTGGGGGCAT GCAGCGGTGGCTCGGCCGCCGCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAaaaa                                                                                                                                                                                                                                              ]
[+] EMBL AU068166             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTCGGCAACGCCACGTACGAGAGGCTGCCGCTGGACCAGGAAGGCGAGGAGGGCGCNGTGCTGTCCGGGTCGGAGGGCGCCGCCGCGCAGATGGAGCAGCAGAGCAGCGGAGGCGC  CGTCGTGC CCCCGCCGATGT ACGCCGCCGTCCAGCAGACGCCGCCGCAC GACATGTTCGGGCAGTGGGGGNAT GCAGCGGTGGNTCGGCCGCNGCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTNTCTACCTAGCTAGTTAGCCTTCCACNTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAaaaaa                                                                                                                                                                                                                                               ]
[+] EMBL CB682172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACGTCCTTGAGGCTGCCGCTGGACCAGGAAGGCGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCGCGCAGATGGAGCAGCAGAGCAGCGGAGGCGC  CGTCGTGC CCCCGCCGATGT ACGCCGCCGTCCAGCAGACGCCGCCGCAC GACATGTTCGGGCAGTGGGGGCAT GCAGCGGTGGCTCGGCCGCCGCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCAC                                                                                                                                                                                             ]


>consensus_13981#0 ACCATACCAGTAGCAGCTAATTAAGTGGGTGGGTTCGCTTGCTTGCTTTGCTTTTGCTTG GAGACGGGAGCGACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGAC TTTCCGACCGCGAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGGCCGAG GGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCACGGCGGC GGCGCGGGAGGGAGCAACGAGGAGGAGGAGGCGTCGCCGCCGCCCGGCGGTGGCTCGGCT ACGGGGTCGGCGGGCCGCCGGCCGAGGGGGAGGCCGCCGGGCTCCAAGAACAAGCCGAAG CCGCCCGTCGTGGTGACGCGGGAGAGCCCCAACGCGATGCGTTCCCACGTGCTGGAGATC GCCAGCGGCGCCGACATCGTCGAGGCCATCGCGGGCTTCTCCCGCCGCAGGCAGCGCGGC GTCTCCGTGCTCAGCGGGAGCGGCGCCGTCACCAACGTCACGCTCCGGCAGCCCGCGGGG ACTGGGGCCGCCGCCGTCGCGCTGCGGGGGAGGTTCGAGATATTGTCCATGTCTGGCGCC TTCCTCCCGGCGCCGGCGCCGCCAGGGGCCACGGGGCTCGCCGTGTACCTCGCCGGCGGG CAGGGGCAGGTGGTGGGTGGGAGCGTCATGGGGGAGCTGATCGCGTCGGGCCCCGTCATG GTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAGGCTGCCGCTGGACCAGGAAGGC GAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCGCGCAGATGGAGCAGCAGAGC AGCGGAGGCGCCGTCGTGCCCCCGCCGATGTACGCCGCCGTCCAGCAGACGCCGCCGCAC GACATGTTCGGGCAGTGGGGGCATGCAGCGGTGGCTCGGCCGCCGCCGACATCGTTCTAG CACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCC TAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCA TAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTAC TGTGCGTATCAAGATCGGCAGTGGTTGCTCACTTGCTCCTTCACTAGCTATCTGCTCGAT CATAAGCTCTTGCATCTTGTTCTTCGCAAGCACCAATTCACGCTTGTGTCAATTGCTTGG TCATTTTGCATACTTTGGACTACTCGATCACTACAAAATATTTCTTGAGTTTTACTCCCT GCATGCACTGCTCAATGCGTGATTATGCCTGAATACACTAA



consensusID : consensus_13981#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 802
fasta sequence
                              [NTANGACTAATTAAGTGGGTGGGTTCGCTTGCTTGCTTTNCTTTTGCTTGGAGACGGGAGCNACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCGCNAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGG-CGAGGGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCACGGCGGCGGCGCCGGAAGGGGAGCACGGGGNGNAGGAGGCGCGCGGCCGCCGGNGGGCGCCCGGCTAGGAGCCCGCGAGGCGGCGGCCGAGGGACGGCGACGGCNACGCGACAAGGACGACCGCGCCGCAGGGGAAAGACCGACGACACGGCGGGCCACAGAGGACCGGAGGAAGACGCCCGGACCGCGCACGAACAAGCCCCAACGGACCGGCCCGGAGCGGCCAGGACCAGGCACGGGAGCGAGACGCAAGAGAAGAGCGCACAAGAGCCCGGGCGAGAGAGCCGACACAGGAAGACAGAGAGAACGCACGCGGCAGGCCGACAGCAGAAAGGCCGACCCAAGGACACGGACCGGCAAAACAGGAGGGGAGGGGGAGGCACGGACCCCGAAGGAGACGCAGACGNAGGCGAGAAGACGCAGCAGGCGGCGACCCGGAGACCGGAGAGGGGCAGCGGCAGAGGGGACGGCAAAAGGGAACGGGGCGACAGGACCGAAGCAGGGGAGCCCCGAGGGCAAACGCGAGGAAGAAGGAAAAGAGGGGCCACACGGGAGGGAAGCGCGAGGAACAGGCGGCCGC]

[+] EMBL OSC104233            [NTANGACTAATTAAGTGGGTGGGTTCGCTTGCTTGCTTTNCTTTTGCTTGGAGACGGGAGCNACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCGCNAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGG CGAGGGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AW155100             [      CTAATTAAGTGGGTGGGTTCGCTTGCTTGCTTTGCTTTTGCTTGGAGACGGGAGCGACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCGCGAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGGCCGAGGGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCACGGCGGCGGCGCCGGAAGGGGAGCACGGGGNGNAGGAGGCGCGCGGCCGCCGGNGGGCGCCCGGCTAGGAGCCCGCGAGGCGGCGGCCGAGGGACGGCGACGGCNACGCGACAAGGACGACCGCGCCGCAGGGGAAAGACCGACGACACGGCGGGCCACAGAGGACCGGAGGAAGACGCCCGGACCGCGCACGAACAAGCCCCAACGGACCGGCCCGGAGCGGCCAGGACCAGGCACGGGAGCGAGACGCAAGAGAAGAGCGCACAAGAGCCCGGGCGAGAGAGCCGACACAGGAAGACAGAGAGAACGCACGCGGCAGGCCGACAGCAGAAAGGCCGACCCAAGGACACGGACCGGCAAAACAGGAGGGGAGGGGGAGGCACGGACCCCGAAGGAGACGCAGACGNAGGCGAGAAGACGCAGCAGGCGGCGACCCGGAGACCGGAGAGGGGCAGCGGCAGAGGGGACGGCAAAAGGGAACGGGGCGACAGGACCGAAGCAGGGGAGCCCCGAGGGCAAACGCGAGGAAGAAGGAAAAGAGGGGCCACACGGGAGGGAAGCGCGAGGAACAGGCGGCCGC]


>consensus_13981#1 NTANGACTAATTAAGTGGGTGGGTTCGCTTGCTTGCTTTNCTTTTGCTTGGAGACGGGAG CNACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCG CNAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGGCGAGGGGATGGGGAG CATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCACGGCGGCGGCGCCGGAAG GGGAGCACGGGGNGNAGGAGGCGCGCGGCCGCCGGNGGGCGCCCGGCTAGGAGCCCGCGA GGCGGCGGCCGAGGGACGGCGACGGCNACGCGACAAGGACGACCGCGCCGCAGGGGAAAG ACCGACGACACGGCGGGCCACAGAGGACCGGAGGAAGACGCCCGGACCGCGCACGAACAA GCCCCAACGGACCGGCCCGGAGCGGCCAGGACCAGGCACGGGAGCGAGACGCAAGAGAAG AGCGCACAAGAGCCCGGGCGAGAGAGCCGACACAGGAAGACAGAGAGAACGCACGCGGCA GGCCGACAGCAGAAAGGCCGACCCAAGGACACGGACCGGCAAAACAGGAGGGGAGGGGGA GGCACGGACCCCGAAGGAGACGCAGACGNAGGCGAGAAGACGCAGCAGGCGGCGACCCGG AGACCGGAGAGGGGCAGCGGCAGAGGGGACGGCAAAAGGGAACGGGGCGACAGGACCGAA GCAGGGGAGCCCCGAGGGCAAACGCGAGGAAGAAGGAAAAGAGGGGCCACACGGGAGGGA AGCGCGAGGAACAGGCGGCCGC



consensusID : consensus_13981#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence
                              [GCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCNNCAGAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCAAAAAAAAAAA]

[+] EMBL AU068104             [GCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCNNCAGAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCAAAAAAAAAAA]


>consensus_13981#2 GCCGACATCGTTCTAGCACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGC CTTCCACTTCTTTCCCTAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTAATTAA TGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCNNCAGAGTTTG AAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCAAAAAAAAAAA



consensusID : consensus_13981#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence
                              [TAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCACTTGCTCCTTCACTAGCTNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF300271             [TAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCACTTGCTCCTTCACTAGCTNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13981#3 TAATTAATGTGCTATGTAATGCATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCA GAGTTTGAAGAATGTAAAATTACTGTGCGTATCAAGATCGGCAGTGGTTGCTCACTTGCT CCTTCACTAGCTNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13981#0      ACCATACCAGTAGCAGCTAATTAAGTGGGTGGGTTCGCTTGCTTGCTTTGCTTTTGCTTG 60
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      ------------------------------------------------------------
                                                                                   

consensus_13981#0      GAGACGGGAGCGACGCTGGCTTCAGCGATTGGCGTGGAGAAGCTAGATTGTTGGTGCGAC 120
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      ------------------------------------------------------------
                                                                                   

consensus_13981#0      TTTCCGACCGCGAAAATAGTAGGGCTGGCAAACCGGTGGCCGGCCGGCGATCCGGCCGAG 180
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      ------------------------------------------------------------
                                                                                   

consensus_13981#0      GGGATGGGGAGCATCGACGGCCACTCGCTGCAGCAGCATCAGGGGTACTCCCACGGCGGC 240
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      ------------------------------------------------------------
                                                                                   

consensus_13981#0      GGCGCGGGAGGGAGCAACGAGGAGGAGGAGGCGTCGCCGCCGCCCGGCGGTGGCTCGGCT 300
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      ------------------------------------------------------------
                                                                                   

consensus_13981#0      ACGGGGTCGGCGGGCCGCCGGCCGAGGGGGAGGCCGCCGGGCTCCAAGAACAAGCCGAAG 360
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      ------------------------------------------------------------
                                                                                   

consensus_13981#0      CCGCCCGTCGTGGTGACGCGGGAGAGCCCCAACGCGATGCGTTCCCACGTGCTGGAGATC 420
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      ------------------------------------------------------------
                                                                                   

consensus_13981#0      GCCAGCGGCGCCGACATCGTCGAGGCCATCGCGGGCTTCTCCCGCCGCAGGCAGCGCGGC 480
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      -------------------------------------NTANGACTAATTAAGTGGGTGGG 23
                                                                                   

consensus_13981#0      GTCTCCGTGCTCAGCGGGAGCGGCGCCGTCACCAACGTCACGCTCCGGCAGCCCGCGGGG 540
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      TTCGCTTGCTTGCTTTNCTTTTGCTTGGAGACGGGAGCNACGCTGGCTTCAGCGATTGGC 83
                                                                                   

consensus_13981#0      ACTGGGGCCGCCGCCGTCGCGCTGCGGGGGAGGTTCGAGATATTGTCCATGTCTGGCGCC 600
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      GTGGAGAAGCTAGATTGTTGGTGCGACTTTCCGACCGCNAAAATAGTAGGGCTGGCAAAC 143
                                                                                   

consensus_13981#0      TTCCTCCCGGCGCCGGCGCCGCCAGGGGCCACGGGGCTCGCCGTGTACCTCGCCGGCGGG 660
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      CGGTGGCCGGCCGGCGATCCGGCGAGGGGATGGGGAGCATCGACGGCCACTCGCTGCAGC 203
                                                                                   

consensus_13981#0      CAGGGGCAGGTGGTGGGTGGGAGCGTCATGGGGGAGCTGATCGCGTCGGGCCCCGTCATG 720
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      AGCATCAGGGGTACTCCCACGGCGGCGGCGCCGGAAGGGGAGCACGGGGNGNAGGAGGCG 263
                                                                                   

consensus_13981#0      GTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAGGCTGCCGCTGGACCAGGAAGGC 780
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      CGCGGCCGCCGGNGGGCGCCCGGCTAGGAGCCCGCGAGGCGGCGGCCGAGGGACGGCGAC 323
                                                                                   

consensus_13981#0      GAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCGCGCAGATGGAGCAGCAGAGC 840
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      GGCNACGCGACAAGGACGACCGCGCCGCAGGGGAAAGACCGACGACACGGCGGGCCACAG 383
                                                                                   

consensus_13981#0      AGCGGAGGCGCCGTCGTGCCCCCGCCGATGTACGCCGCCGTCCAGCAGACGCCGCCGCAC 900
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      AGGACCGGAGGAAGACGCCCGGACCGCGCACGAACAAGCCCCAACGGACCGGCCCGGAGC 443
                                                                                   

consensus_13981#0      GACATGTTCGGGCAGTGGGGGCATGCAGCGGTGGCTCGGCCGCCGCCGACATCGTTCTAG 960
consensus_13981#2      --------------------------------------------GCCGACATCGTTCTAG 16
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      GGCCAGGACCAGGCACGGGAGCGAGACGCAAGAGAAGAGCGCACAAGAGCCCGGGCGAGA 503
                                                                                   

consensus_13981#0      CACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCC 1020
consensus_13981#2      CACTGGCACCGGTTAATCAATGTCTCTCTACCTAGCTAGTTAGCCTTCCACTTCTTTCCC 76
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      GAGCCGACACAGGAAGACAGAGAGAACGCACGCGGCAGGCCGACAGCAGAAAGGCCGACC 563
                                                                                   

consensus_13981#0      TAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTA-ATTAATGTGCTATGTAATGC 1079
consensus_13981#2      TAGTTGTTTGAGTAGGTTAATTAATCATTTACCATGTTA-ATTAATGTGCTATGTAATGC 135
consensus_13981#3      -------------------------------------TA-ATTAATGTGCTATGTAATGC 22
consensus_13981#1      CAAGGACACGGACCGGCAAAACAGGAGGGGAGGGGGAGGCACGGACCCCGAAGGAGACGC 623
                                                               *   *      * *  * **

consensus_13981#0      ATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTA 1139
consensus_13981#2      ATAAGTACTCGTGTGATCTTATCGTTCCATTTTCNNCAGAGTTTGAAGAATGTAAAATTA 195
consensus_13981#3      ATAAGTACTCGTGTGATCTTATCGTTCCATTTTCTTCAGAGTTTGAAGAATGTAAAATTA 82
consensus_13981#1      AGACGNAGGCGAGAAGACGCAGCAGGCGGCGACCCGGAGA-CCGGAGAGGGGCAGCGGCA 682
                       * * * *  ** *    *  * *   *      *   ***    **     * *     *

consensus_13981#0      CTGTGCGTATCAAGATCGGCAGTGGTTGCTCACTTGCTCCTTCACTAGCTATCTGCTCGA 1199
consensus_13981#2      CTGTGCGTATCAAGATCGGCAGTGGTTGCTCAAAAAAAAAAA------------------ 237
consensus_13981#3      CTGTGCGTATCAAGATCGGCAGTGGTTGCTCACTTGCTCCTTCACTAGCTNANAAAAAAA 142
consensus_13981#1      GAGGGGACGGCAAAAGGGAACGGGGCGACAGGACCGAAGCAGGGGAGCCCCGAGGGCAAA 742
                         * *     *** *  *   * **   *                               

consensus_13981#0      TCATAAGCTCTTGCATCTTGTTCTTCGCAAGCACCAATTCACGCTTGTGTCAATTGCTTG 1259
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------- 192
consensus_13981#1      CGCGAGGAAGAAGGAAAAGAGGGGCCACACGGGAGGGAAGCGCGAGGAACAGGCGGCCGC 802
                                                                                   

consensus_13981#0      GTCATTTTGCATACTTTGGACTACTCGATCACTACAAAATATTTCTTGAGTTTTACTCCC 1319
consensus_13981#2      ------------------------------------------------------------
consensus_13981#3      ------------------------------------------------------------
consensus_13981#1      ------------------------------------------------------------
                                                                                   

consensus_13981#0      TGCATGCACTGCTCAATGCGTGATTATGCCTGAATACACTAA 1361
consensus_13981#2      ------------------------------------------
consensus_13981#3      ------------------------------------------
consensus_13981#1      ------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)