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Oryza sativa
cluster # 13991 cluster # 13991       Sequences # 14       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13991#0 length = 681 sequences # 7  
consensus_13991#1 length = 553 sequences # 1  
consensus_13991#2 length = 531 sequences # 1  
consensus_13991#3 length = 507 sequences # 4  
consensus_13991#4 length = 246 sequences # 1  

consensusID : consensus_13991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 681
fasta sequence
                              [AGATCTCGCTTCCTCTCCTCTCTTCCTCCAAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCT-GCGC-TG-AGAAGTT-CCTGAAGCA-CT-CCAT-GAGGGTTGGCATG-AGATTTGCTGAGCTT-AACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATG-TTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGAAGAGCCATATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCTGTTATGTCTAATTTCATATCCTGAGGTTA-CAGGAACCTTAAGTACATTTTTTTACCATTGCTGNGTTCAATGGTCTTGATTCACATATAATAGTATCCA]

[+] EMBL CA764474             [AGATCTCGCTTCCTCTCCTCTCCTCCTCCAAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGCCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGACAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCT GCGC TG AGAAGTT CCTGAAGCA CT CCAT GAGGGTTGGCATG AGATTTGCTGAGCTT AACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGACAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATG TTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATCGAGAAGAGCCATATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCTGTTATGTCTAATTTCATATCCTGAGGTTA CAGGAACCTTAAGTACATTTTTTTACCATTGCTGNGTTCAATGGTCTTGATTCACATATAATAGTATCCA]
[+] EMBL AK120784             [   TCTCGCTTCCTCTCCTCTCTTCCTCCAAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCT GCGC TG AGAAGTT CCTGAAGCA CT CCAT GAGGGTTGGCATG AGATTTGCTGAGCTT AACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATG TTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGAAGAGCCATATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCTGTTATGTCTAATTTCATATCCTGAGGTTA CAGGAACCTTAAGT                                                        ]
[+] EMBL CF321448             [               TCCTCTCTTCCTCCAAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCT GCGC TG AGAAGTT CCTGAAGCA CT CCAT GAGGGTTGGCATG AGATTTGCTGAGCTT AACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATG TTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATC                                                                                                                                                                                                    ]
[-] EMBL CB964427             [                           CCAAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCT GCGC TG AGAAGTT CCTGAAGCA CT CCAT GAGGGTTGGCATG AGATTTGCTGAGCTT AACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATG TTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGAAGAGCCATATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCTGTTATGTCTAATTTCATATCCTGAGGTTA CAGGAACCTTAAGTACAT                                                    ]
[+] EMBL AF150113             [                            CAAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCT GCGC TG AGAAGTT CCTGAAGCA CT CCAT GAGGGTTGGCATG AGATTTGCTGAGCTT AACCAGGGTGTTGCCACAACTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATAATGTTTTTCCTCTTAAACCG                                                                                                                                                                                                                        ]
[+] EMBL C73409               [                            CAAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCT GCGC TG AGAAGTT CCTGAAGCA CT CCAT GAGGGTTGGCATG AGATTTGCTGAGCTT AACCAGGGTGTTGCCACAACTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATAATGTTTTTCCTCTTAAACCG                                                                                                                                                                                                                        ]
[-] EMBL CB966252             [                                                                                                                                                                                                                                                                        CCCCCGCTGGCGCTTGAAGAAGTTCCCTGAAGCACCTCCCATGGAGGTTTGGCATGAAGATTTCCTGAGCTTAAACCAGGTGGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGCCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATG TTTTCCTCNTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGAAGAGCCATATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCTGTTATGTCTAATTTCATATCCTGAGGTTANCAGGAACCTTAAGTACA                                                     ]


>consensus_13991#0 AGATCTCGCTTCCTCTCCTCTCTTCCTCCAAAACCCTAGCCTTCCTCCTCCTCTCCCGGC GGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGA CAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTA CAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCT CGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCAT GAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACTAATCAAT TGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATT TGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTCTTAAACCGATGGGCGACTGCTG GGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGAAGAGCCA TATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCTGTTATGTCTAATTTCATA TCCTGAGGTTACAGGAACCTTAAGTACATTTTTTTACCATTGCTGNGTTCAATGGTCTTG ATTCACATATAATAGTATCCA



consensusID : consensus_13991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence
                              [CCAGCTCCAGATCCGCGATAGTTTGAGCATGTACAACTCCCTCGTGGTCCGATGCTTCACAGACTGCGTGACACTTTCCGCCGGAAGACCCTCGTCAAGCACAGAGGTATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGTTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGATTCAATCAATTGGGTTTGGTTTGCTCAACGTTGGCAATTTTGTCAGCATGACAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGGTCTTCCTCCTTAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGCAGAGCCATATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCCTGTTAGTCTAATTTCATATCACTGAGGTTACAGGAACCTAAGTACATTTTTTTACCAACAACAGGGACAAGAACATAGCGGCCCAGCTATTCCCTTAGTGAGGTAATTTAGGT]

[-] EMBL BU672942             [CCAGCTCCAGATCCGCGATAGTTTGAGCATGTACAACTCCCTCGTGGTCCGATGCTTCACAGACTGCGTGACACTTTCCGCCGGAAGACCCTCGTCAAGCACAGAGGTATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGTTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGATTCAATCAATTGGGTTTGGTTTGCTCAACGTTGGCAATTTTGTCAGCATGACAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGGTCTTCCTCCTTAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGCAGAGCCATATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCCTGTTAGTCTAATTTCATATCACTGAGGTTACAGGAACCTAAGTACATTTTTTTACCAACAACAGGGACAAGAACATAGCGGCCCAGCTATTCCCTTAGTGAGGTAATTTAGGT]


>consensus_13991#1 CCAGCTCCAGATCCGCGATAGTTTGAGCATGTACAACTCCCTCGTGGTCCGATGCTTCAC AGACTGCGTGACACTTTCCGCCGGAAGACCCTCGTCAAGCACAGAGGTATCCTGCGTCCG CCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGTTTGGCATGAGATTTGCTGAGCT TAACCAGGGTGTTGCCACACCTGATTCAATCAATTGGGTTTGGTTTGCTCAACGTTGGCA ATTTTGTCAGCATGACAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGA CATCATGGTCTTCCTCCTTAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTA TATTAAATTCCCATATTGGTAGCTATTGAGCAGAGCCATATTTCTGAATATTTTTATGGT ATATCGTGTAATCTAATTCCTGTTAGTCTAATTTCATATCACTGAGGTTACAGGAACCTA AGTACATTTTTTTACCAACAACAGGGACAAGAACATAGCGGCCCAGCTATTCCCTTAGTG AGGTAATTTAGGT



consensusID : consensus_13991#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence
                              [CTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTTTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGAAGAGCCATATTTTTGAAAAAAAAAAAAAAAAAA]

[-] EMBL CF321447             [CTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTTTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGAAGAGCCATATTTTTGAAAAAAAAAAAAAAAAAA]


>consensus_13991#2 CTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCG ACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCC AGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCG TGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCG CTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGG GTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGC ATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTC CTTTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCA TATTGGTAGCTATTGAGAAGAGCCATATTTTTGAAAAAAAAAAAAAAAAAA



consensusID : consensus_13991#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 507
fasta sequence
                              [AAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTA---AAAAAAAAAAAAA]

[+] EMBL AU163684             [AAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTA   AAAAAAAAAAAAA]
[+] EMBL CB682513             [        AGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTAT                                    ]
[+] EMBL CA754629             [             TCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTCTTANACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTAANACCAAAAA  ]
[+] EMBL BI795280             [                       CTCCCGGCGGCGGC GCGGCGATGGACAAGAGCATGCTCGGCGACCTCG CGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGA CGTTTGAGAATGTAC ACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGC ATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTAaaaaaa                               ]


>consensus_13991#3 AAAACCCTAGCCTTCCTCCTCCTCTCCCGGCGGCGGCGGCGGCGATGGACAAGAGCATGC TCGGCGACCTCGACGGTCTCCCGGAGGAGGACAAGATGCGCATGGCGGCCATGGTCGACC AGCTCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAG ACTGCGTGGACACTTTCCGCCGGAAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCC GCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCATGAGATTTGCTGAGCTTA ACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTT GTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCAT GTTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAA TTCCCATATTGGTAAAAAAAAAAAAAA



consensusID : consensus_13991#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 246
fasta sequence
                              [GACACTGCACATGGACTGAGGAGTAGAAAGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTAAAAAAAAAAATTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG]

[+] EMBL CF322048             [GACACTGCACATGGACTGAGGAGTAGAAAGGCAATTTTGTCAGCATAAAATCTGTAATCCTTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTCTTAAACCGATGGGCGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTAAAAAAAAAAATTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG]


>consensus_13991#4 GACACTGCACATGGACTGAGGAGTAGAAAGGCAATTTTGTCAGCATAAAATCTGTAATCC TTAAATATTTGAGTACTTGAGGATACGAGAGACATCATGTTTTCCTCTTAAACCGATGGG CGACTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTAAAAA AAAAAATTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTC TTGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13991#0      AGATCTCGCTTCCTCTCCTCTCTTCCTCCAAAACCCTAGCCTTCCTCCTCCTCTCCCGGC 60
consensus_13991#3      -----------------------------AAAACCCTAGCCTTCCTCCTCCTCTCCCGGC 31
consensus_13991#2      -----------------------------------CTAGCCTTCCTCCTCCTCTCCCGGC 25
consensus_13991#1      ------------------------------------------------------------
consensus_13991#4      ------------------------------------------------------------
                                                                                   

consensus_13991#0      GGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGA 120
consensus_13991#3      GGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGA 91
consensus_13991#2      GGCGGCGGCGGCGATGGACAAGAGCATGCTCGGCGACCTCGACGGTCTCCCGGAGGAGGA 85
consensus_13991#1      ------------------------------------------------------------
consensus_13991#4      ------------------------------------------------------------
                                                                                   

consensus_13991#0      CAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTA 180
consensus_13991#3      CAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTA 151
consensus_13991#2      CAAGATGCGCATGGCGGCCATGGTCGACCAGCTCCAGATCCGCGATAGTTTGAGAATGTA 145
consensus_13991#1      ---------------------------CCAGCTCCAGATCCGCGATAGTTTGAGCATGTA 33
consensus_13991#4      ------------------------------------------------------------
                                                                                   

consensus_13991#0      CAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCT 240
consensus_13991#3      CAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCT 211
consensus_13991#2      CAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGGAAGACCCT 205
consensus_13991#1      CAACTCCCTCGTGGTCCGATGCTTCACAGACTGCGTG-ACACTTTCCGCCGGAAGACCCT 92
consensus_13991#4      ------------------------------------------------------------
                                                                                   

consensus_13991#0      CGACAAGCA-AGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCA 299
consensus_13991#3      CGACAAGCA-AGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCA 270
consensus_13991#2      CGACAAGCA-AGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCA 264
consensus_13991#1      CGTCAAGCACAGAGGTATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCA 152
consensus_13991#4      ------------------------------------------------------------
                                                                                   

consensus_13991#0      TGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACT-AATCA 358
consensus_13991#3      TGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACT-AATCA 329
consensus_13991#2      TGAGGGTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACT-AATCA 323
consensus_13991#1      TGAGGTTTGGCATGAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGATTCAATCA 212
consensus_13991#4      --------------------------------------------------GACACTGCAC 10
                                                                         **        

consensus_13991#0      ATTGGGTTTGGTTT--CTAACGTTGGCAATTTTGTCAGCATAA-AATCTGTAATCCTTAA 415
consensus_13991#3      ATTGGGTTTGGTTT--CTAACGTTGGCAATTTTGTCAGCATAA-AATCTGTAATCCTTAA 386
consensus_13991#2      ATTGGGTTTGGTTT--CTAACGTTGGCAATTTTGTCAGCATAA-AATCTGTAATCCTTAA 380
consensus_13991#1      ATTGGGTTTGGTTTGCTCAACGTTGGCAATTTTGTCAGCATGACAATCTGTAATCCTTAA 272
consensus_13991#4      ATGGACTGAGGAGT-----AGAAAGGCAATTTTGTCAGCATAA-AATCTGTAATCCTTAA 64
                       ** *  *  **  *     *    ***************** * ****************

consensus_13991#0      ATATTTGAGTACTTGAGGATACGAGAGACATCATG-TTTTCCTCTTAAACCGATGGGCGA 474
consensus_13991#3      ATATTTGAGTACTTGAGGATACGAGAGACATCATG-TTTTCCTCTTAAACCGATGGGCGA 445
consensus_13991#2      ATATTTGAGTACTTGAGGATACGAGAGACATCATG-TTTTCCTTTTAAACCGATGGGCGA 439
consensus_13991#1      ATATTTGAGTACTTGAGGATACGAGAGACATCATGGTCTTCCTCCTTAACCGATGGGCGA 332
consensus_13991#4      ATATTTGAGTACTTGAGGATACGAGAGACATCATG-TTTTCCTCTTAAACCGATGGGCGA 123
                       *********************************** * *****  * *************

consensus_13991#0      CTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGAA 534
consensus_13991#3      CTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAAAAAAAAAAAA 505
consensus_13991#2      CTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGAA 499
consensus_13991#1      CTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTATTGAGCA 392
consensus_13991#4      CTGCTGGGTATCAAGTTGAATAAATTTATATTAAATTCCCATATTGGTAGCTAAAAAAAA 183
                       *************************************************   *   *  *

consensus_13991#0      GAGCCATATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCTGTTATGTCTAAT 594
consensus_13991#3      AA---------------------------------------------------------- 507
consensus_13991#2      GAGCCATATTTTTGAAAAAAAAAAAAAAAAAA---------------------------- 531
consensus_13991#1      GAGCCATATTTCTGAATATTTTTATGGTATATCGTGTAATCTAATTCCTGTTAGTCTAAT 452
consensus_13991#4      AA---ATTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTC 240
                        *                                                          

consensus_13991#0      TTCATATCCTGAGGTTACAGGAACCTTAAGTACATTTTTTTACCATTGCTGNGTTCAATG 654
consensus_13991#3      ------------------------------------------------------------
consensus_13991#2      ------------------------------------------------------------
consensus_13991#1      TTCATATCACTGAGGTTACAGGAACCTAAGTACATTTTTTTACCAACAACAGGGACAAGA 512
consensus_13991#4      TTGCCG------------------------------------------------------ 246
                                                                                   

consensus_13991#0      GTCTTGATTCACATATAATAGTATCCA-------------- 681
consensus_13991#3      -----------------------------------------
consensus_13991#2      -----------------------------------------
consensus_13991#1      ACATAGCGGCCCAGCTATTCCCTTAGTGAGGTAATTTAGGT 553
consensus_13991#4      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)