These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1986 fasta sequence [CGACATAAAACGGGGAGGAAATCAATCCTCCTCCCCCCCTTATCCCCTCTTCCTTCTTCGCTTCTTCTTCTTCCTCCGCATTAATTCTCTCTTCCATTCCGCCTCGCCTCGCCTCGCCTCTCGCGGCCAAGCAGATCCGGCCACCGCCTGCCCACCGACGACGATGAGCCACCGGCGAGTGGATGCGGCGGCGTGCGACTCATGGAGGCCCCCACCCACGCCGCCGCCTCCCCACGCCCGCCGCGCGCTCGCCCTCCGCGTGGGTGGGGGTGGGGGTGGCCCGGCGTTCGCGTCGCTCACCGTGCGGGAGGGGGGAGGGGGAGGGGAGGAGGGGGAGGTGGGGGAGGGGAAGGGGAAGCAGCAGCAGCTGCCGGCGGCGGGGGTGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGCTATTGCAGAGATAGGGAAGGAAGAGGGCTTGAAGGGTTACTGGAAAGGCAATCTTCCACAGGTTATCCGCATAGTTCCTTACAGTGCGGTGCAACTGTTTTCTTATGAAGTTTACAAGAAATTTTTCCGGAGAAAGGACGGAGAGCTTACTGTGTTTGGGAGACTTGCTGCTGGTGCTTGTGCGGGCATGACATCTACACTTGTAACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTATGTCTCAGGTTGCTATGAACATGCTGAGAGACGAA-GGTTTGGCCTCCTTCTATGGAGGCCTGG-GTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGAAAAGTTGACCTCTTTG--CAT-GCTGCATTTT-GTTTGGTTT-TCCC-ATTTCTT-GGGG-CCAATTCTAGGGT-TTG-AATAGTAGCACAT-CTATTCTGTTGCTTTGCC-GG-ATATTGA-GGC-GG-CGTTAG-AAG-CAAACAAG-ACAGT-AAATTCA-TTTCTTT--AGTGG--CAAT-ATGGC--TTTA-GAT-AGC-GTCAGCA-GGAG-CA-TTAA-CCCTA-CAAGAT--CT-TATTT-ATT-GGATTG-CAAGT-ATTT-GGTG-ATAT-CATAAGTT-CTTC--AAAAAGAT--CAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG-CAGAGTGAAAAATTTGTATCTCCAAAAAAAAAAAAAAAA] [+] EMBL AK121045 [CGACATAAAACGGGGAGGAAATCAATCCTCCTCCCCCCCTTATCCCCTCTTCCTTCTTCGCTTCTTCTTCTTCCTCCGCATTAATTCTCTCTTCCATTCCGCCTCGCCTCGCCTCGCCTCTCGCGGCCAAGCAGATCCGGCCACCGCCTGCCCACCGACGACGATGAGCCACCGGCGAGTGGATGCGGCGGCGTGCGACTCATGGAGGCCCCCACCCACGCCGCCGCCTCCCCACGCCCGCCGCGCGCTCGCCCTCCGCGTGGGTGGGGGTGGGGGTGGCCCGGCGTTCGCGTCGCTCACCGTGCGGGAGGGGGGAGGGGGAGGGGAGGAGGGGGAGGTGGGGGAGGGGAAGGGGAAGCAGCAGCAGCTGCCGGCGGCGGGGGTGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGCTATTGCAGAGATAGGGAAGGAAGAGGGCTTGAAGGGTTACTGGAAAGGCAATCTTCCACAGGTTATCCGCATAGTTCCTTACAGTGCGGTGCAACTGTTTTCTTATGAAGTTTACAAGAAATTTTTCCGGAGAAAGGACGGAGAGCTTACTGTGTTTGGGAGACTTGCTGCTGGTGCTTGTGCGGGCATGACATCTACACTTGTAACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTATGTCTCAGGTTGCTATGAACATGCTGAGAGACGAA GGTTTGGCCTCCTTCTATGGAGGCCTGG GTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGAAAAGTTGACCTCTTTG CAT GCTGCATTTT GTTTGGTTT TCCC ATTTCTT GGGG CCAATTCTAGGGT TTG AATAGTAGCACAT CTATTCTGTTGCTTTGCC GG ATATTGA GGC GG CGTTAG AAG CAAACAAG ACAGT AAATTCA TTTCTTT AGTGG CAAT ATGGC TTTA GAT AGC GTCAGCA GGAG CA TTAA CCCTA CAAGAT CT TATTT ATT GGATTG CAAGT ATTT GGTG ATAT CATAAGTT CTTC AAAAAGAT CAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTA ] [+] EMBL CF324023 [ GATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGCTATTGCAGAGATAGGGAAGGAAGAGGGCTTGAAGGGTTACTGGAAAGGCAATCTTCCACAGGTTATCCGCATAGTTCCTTACAGTGCGGTGCAACTGTTTTCTTATGAAGTTTACAAGAAATTTTTCCGGAGAAAGGACGGAGAGCTTACTGTGTTTGGGAGACTTGCTGCTGGTGCTTGTGCGGGCATGACATCTACACTTGTAACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTATGTCTCAGGTTGCTATGAACATGCTGAGAGACGAAGGGTTTGGCCTCCTTCTATGGAGGCCTGGNGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCA ] [+] EMBL AU068634 [ GCTTGTGCGGGCATGACATCTACACTTGTAACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTATGTCTCAGGTTGCTATGAACATGCTGAGAGACGAA GGTTTGGCCTCCTTCTATGGAGGCCTGG GTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGNAAAGTTGACCTCTTTG CAT GCTGCATTTT GTTTGGGTT TCCC ATTTCTTGGGGG CCAATTCTAGGGG TTGAAATAGTAGCACATCCTATTCTGTTGCTTTGCCGGG ATATTGAGGGC GGCCGTTAGNAAGCCAAACAAGNCCAGTAAAATTCATTTTCTTTTAAGTGGGCCAATAATGGCCTTTTANAATNAGCGGNCACAANGGAGCCATTTAANCCCTACCAAGGTTCCTNAATTTAATTGGGATTGNCAAGTNATTTGGGNGAANATCCATAAGTTCCTTCCNAAAAAGNTTCCAGGggtta ] [-] EMBL CB627006 [ ATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGAAAAGTTGACCTTTTTG CAT GCTGCATTTT GTTTGGTTT TCCC ATTTCTT GGGG CCAATTCTAGGGT TTG AATAGTAGCACAT CTATTCTGTTGCTTTGCC GG ATATTGA GGC GG CGTTAG AAG CAAACAAG ACAAT AAATTCA TTTCTTT AGTGG CAAT ATGGC TTTA GAT AGC GTCAGCA GGAG CA TTAA CCCTA CAAGAT CT TATTT ATT GGATTG CAAGT ATTT GGTG ATAT CATAAGTT CTTC AAAAAGAT CAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATT ] [+] EMBL AU068633 [ gcCACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGNAAAGTTGACCTCTTTG CAT GCTGCATTTT GTTTGGTTT TCCC ATTTCTT GGGG CCAATTCTAGGGT TTG AATAGTAGCACAT CTATTCTGTTGCTTTGCC GG ATATTGA GGC GG CGTTAG AAG CAAACAAG ACAGT AAATTCA TTTCTTT AGTGG CAAT ATGGC TTTA GAT AGC GTCAGCA GGAG CA TTAA CCCTA CAAGAT CT TATTT ATT GGATTG CAAGT ATTT GGTG ATAT CATAAGTT CTTC AAAAAGAT CAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTAaaaa aaaa ] [-] EMBL CA761594 [ TTGGCCCCTTTGGCCATGGGTGCATTTTCGTTGGGTTTATCCCAATTTGGG GGGGACCAATTCTAGGGTGTGG AATAGTAGCCCAT CTATTCTGTTGCTTTCCC GGAATATTAA GGCGGG CGTTAA AAG CAACCAAG CCAAT AAATTCC TTTCTTT AGTGG CAAT ATGGC TTTA GAT AGC GTCAGCA GGAG CA TTAA CCCTC CAAGAT CT TATTT ATT GGATTG CAAGT ATTT GGTG ATAT CATAAGTT CTTC AAAAAGAT CAGGATTATCCCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTGGTCTTTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTCCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG CAGAGTGAATATTTTGTATCTCCAAAAAAAAAAAAAAAA] [+] EMBL BI799417 [ TTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTGCCAGAGTGAAAAA ] [+] EMBL BI799259 [ TTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG CAGAGTGAAAAA ] [+] EMBL BI799865 [ TTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG CAGAGTGAAAAA ] [+] EMBL BI799646 [ TTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG CAGAGTGAAAAA ] consensusID : consensus_14022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 861 fasta sequence [TGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGTAACTCTGATGATGTCCTCCACCTCTTCTCTTCAGTTTGCTATAAATTTCTAAGTTGGTAAGAGTGTGTAATTCTGTTGTTGCTATATAATGGCTTTTCTGTAGCCATGGAGCTGATGCAACACTGTCTATCATCTGCGATTTTCATGACAACAATGTCAATCTGTTGTTGCTATAAAATGCCTTCCATCTAGCCATGGAGTTGATCCCAACCCTGTCTATTTTAGTACCTGTCATTTGCAATTGCATGATAAATTCCCTGAATTCATAAGTGCAGCTTCCGAATACATCAGGGATAAGTTAGAACGAACCGAGTTCTGTCTGTGTGTGTGGTGTTGAACATAACAATGGGGTACTCTTCTCTCCACTACAAATATGCAGTATTCTGGTCTTGTGGTTGTATGTGAACTGATATGGAACAATGAAACTCGTGGTTTACTAAAAATTAACACGCAATCTCAAAATTACGTTTTAGAAATTTGAAAACTATTCCGGGAAACATATCATGAAAAAGGCTTTCGTGAGGCATGGAGCATTTTTCTTTAAAAAAGAACCTGTGAGTCATGAAACTGATGTGTTTCACCACTACCAATTCGTGGTTGCTATCTGAGGGAAAGCCATAATTTGTTCCNATATACTTATAATACACTGTAACATACTCACTGTGTCC] [+] EMBL CB627005 [TGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGTAACTCTGATGATGTCCTCCACCTCTTCTCTTCAGTTTGCTATAAATTTCTAAGTTGGTAAGAGTGTGTAATTCTGTTGTTGCTATATAATGGCTTTTCTGTAGCCATGGAGCTGATGCAACACTGTCTATCATCTGCGATTTTCATGACAACAATGTCAATCTGTTGTTGCTATAAAATGCCTTCCATCTAGCCATGGAGTTGATCCCAACCCTGTCTATTTTAGTACCTGTCATTTGCAATTGCATGATAAATTCCCTGAATTCATAAGTGCAGCTTCCGAATACATCAGGGATAAGTTAGAACGAACCGAGTTCTGTCTGTGTGTGTGGTGTTGAACATAACAATGGGGTACTCTTCTCTCCACTACAAATATGCAGTATTCTGGTCTTGTGGTTGTATGTGAACTGATATGGAACAATGAAACTCGTGGTTTACTAAAAATTAACACGCAATCTCAAAATTACGTTTTAGAAATTTGAAAACTATTCCGGGAAACATATCATGAAAAAGGCTTTCGTGAGGCATGGAGCATTTTTCTTTAAAAAAGAACCTGTGAGTCATGAAACTGATGTGTTTCACCACTACCAATTCGTGGTTGCTATCTGAGGGAAAGCCATAATTTGTTCCNATATACTTATAATACACTGTAACATACTCACTGTGTCC] consensusID : consensus_14022#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [GTTTGGCCTCCTTCTATGGAGGCCTGGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGGGTGAACTACAGTTTAGGGAGAGGAGAATGNATCTATTTTTCTTTTTGATATTTANGAGATCGTATGTATTTATTTTCCTAGNTTTCAAGGTGTGGGGGAAGTGATGGTTGGAGAATTGGAACTATTTTTCTCATGNGGTTTAGGTATTGATTGATTTAAATTT] [+] EMBL CA766232 [GTTTGGCCTCCTTCTATGGAGGCCTGGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGGGTGAACTACAGTTTAGGGAGAGGAGAATGNATCTATTTTTCTTTTTGATATTTANGAGATCGTATGTATTTATTTTCCTAGNTTTCAAGGTGTGGGGGAAGTGATGGTTGGAGAATTGGAACTATTTTTCTCATGNGGTTTAGGTATTGATTGATTTAAATTT] consensusID : consensus_14022#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence [CAGCAGGAGCNTTAACCCTACAAGATCTTATTTATTGGATTGCAAGTATTTGGTGATATCATAAGTTCTTCAAAAAGATCAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCNCCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGA-TTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGA-TGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTAAAAAAAAAAAAAATTATAATAAAAA] [+] EMBL AU174730 [CAGCAGGAGCNTTAACCCTACAAGATCTTATTTATTGGATTGCAAGTATTTGGTGATATCATAAGTTCTTCAAAAAGATCAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCNCCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGA TTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGA TGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTAAAAAAAAAAAAAA ] [+] EMBL BI799502 [ CATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGACTTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGACTGAAATGAAAAGAGTGAACTAC GTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTAAAAAAATAATTATAATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14022#0 CGACATAAAACGGGGAGGAAATCAATCCTCCTCCCCCCCTTATCCCCTCTTCCTTCTTCG 60 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 CTTCTTCTTCTTCCTCCGCATTAATTCTCTCTTCCATTCCGCCTCGCCTCGCCTCGCCTC 120 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 TCGCGGCCAAGCAGATCCGGCCACCGCCTGCCCACCGACGACGATGAGCCACCGGCGAGT 180 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 GGATGCGGCGGCGTGCGACTCATGGAGGCCCCCACCCACGCCGCCGCCTCCCCACGCCCG 240 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 CCGCGCGCTCGCCCTCCGCGTGGGTGGGGGTGGGGGTGGCCCGGCGTTCGCGTCGCTCAC 300 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 CGTGCGGGAGGGGGGAGGGGGAGGGGAGGAGGGGGAGGTGGGGGAGGGGAAGGGGAAGCA 360 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 GCAGCAGCTGCCGGCGGCGGGGGTGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGT 420 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 GCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGAT 480 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 CACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGG 540 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 GGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGCTATTGCAGAGATAGGGAAGGAAGA 600 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 GGGCTTGAAGGGTTACTGGAAAGGCAATCTTCCACAGGTTATCCGCATAGTTCCTTACAG 660 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 TGCGGTGCAACTGTTTTCTTATGAAGTTTACAAGAAATTTTTCCGGAGAAAGGACGGAGA 720 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 GCTTACTGTGTTTGGGAGACTTGCTGCTGGTGCTTGTGCGGGCATGACATCTACACTTGT 780 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 AACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTAT 840 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 GTCTCAGGTTGCTATGAACATGCTGAGAGACGAAGGTTTGGCCTCCTTCTATGGAGGCCT 900 consensus_14022#2 -----------------------------------GTTTGGCCTCCTTCTATGGAGGCCT 25 consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 GGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTT 960 consensus_14022#2 GGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTT 85 consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 AATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGC 1020 consensus_14022#2 AATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGC 145 consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 TCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCA 1080 consensus_14022#2 TCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCA 205 consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ------------------------------------------------------------ consensus_14022#0 GATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGA 1140 consensus_14022#2 GATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGA 265 consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ---------------------------------------------TGCTGGTGAGGCACC 15 consensus_14022#0 ACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACC 1200 consensus_14022#2 ACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACC 325 consensus_14022#3 ---------------------CAGCAGGAGCNTTAACCC---TACAAGATCTTATTTATT 36 consensus_14022#1 CGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTC-TTCGCGGCGGGGGCGGCC 74 * * * * * * consensus_14022#0 A-AATAGCA-GTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGG 1258 consensus_14022#2 A-AATAGCA-GTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGG 383 consensus_14022#3 G-GATTGCAAGTATTTGG-TGATATCATAAGTTCTTCAAAAAGATCAGGATTATACCATA 94 consensus_14022#1 GCGGGGGCCGTCGCCAAGACGATCAC-CGCGCCGCTCGACCGCGTCAAGCTCCT--CATG 131 ** ** * * * * * consensus_14022#0 CAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGAAAAGTT 1318 consensus_14022#2 CAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAG-------- 435 consensus_14022#3 CAGACAGA--TATATGAGGTGCTGT--GGAGCNCCCTGGTGACTGAAATGGC-------- 142 consensus_14022#1 CAGACGCACAGCGTGCGGGTGGTGGG-GGAGAGCACCAAGAAAGGGATCGGATTCCTCGA 190 **** * * ** * * * * * consensus_14022#0 GACCTCTTTGCATGCTGCATTTTGTTTGGTTTTCCCATTTCTTGGGGCCAATTCTAGGGT 1378 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 GGTAACTCTGATGATGTCCTCCACCTCTTCTCTTCAGTTTGCTATA---AATTTCTAAGT 247 consensus_14022#0 TTGAATAGTAGCACATCTATTCTGTTGCTTTGCCGGATATTGAGGCGGCGTTAGAAGCAA 1438 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 TGGTAAGAGTGTGTAATTCTGTTGTTGCTATATAATGGCTTTTCTGTAGCCATGGAGCTG 307 consensus_14022#0 ACAAGACAGTAAATTCATTTCTTTAGTGGCAATATGGCTTTAGATAGCGTCAGCAGGAGC 1498 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 ATGCAACACTGTCTATCATCTGCGATTTTCATGACAACAATGTCAATCTGTTGTTGCTAT 367 consensus_14022#0 ATTAACCCTACAAGATCTTATTTATTGGATTGCAAGTATTTGGTGATATCATAAGTTCTT 1558 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 AAAATGCCTTCCATCTAGCCATGGAGTTGATCCCAACCCTGTCTATTTTAGTACCTGTCA 427 consensus_14022#0 CAAAAAGATCAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGT 1618 consensus_14022#2 ------------------------------------------------------------ consensus_14022#3 ------------------------------------------------------------ consensus_14022#1 TTTGCAATTGCATGATAAATTCCCTGAATTCATAAGTGCAGCTTCCGAATACATCAGGGA 487 consensus_14022#0 GACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGA-A 1677 consensus_14022#2 ---------------------------ATTGGCCTGGTCGCTGATTCTGATGCTGTGA-A 467 consensus_14022#3 ------------ATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGA-A 189 consensus_14022#1 TAAGTTAGAACGAACCGAGTTCTGTCTGTGTGTGTGGT-GTTGAACATAACAATGGGGTA 546 * * **** * *** * * ** * * consensus_14022#0 TCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGT---CGCCTTTATAT 1734 consensus_14022#2 TCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGA---CGCCTTTATAT 524 consensus_14022#3 TCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGT---CGCCTTTATAT 246 consensus_14022#1 CTCTTCTCTCCACTACAAATATGCAGTATTCTGGTCTTGTGGTTGTATGTGAACTGATAT 606 * ** * ** * *** * ** * * * * * * **** consensus_14022#0 TTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTA 1794 consensus_14022#2 TTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGGGTGAACTACAGTTTA 584 consensus_14022#3 TTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTA 306 consensus_14022#1 GGAACAATGAAAC-TCGTGGTTTACTAAAAATTAACACGCAATCTCAAAATTACGTTTTA 665 * *** * * ** * ** * * * * * ** ** *** **** consensus_14022#0 GGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGT-ATGTATTTATT 1853 consensus_14022#2 GGGAGAGGAGAATGNATCTATTTTTCTTTTTGATATTTANGAGATCGT-ATGTATTTATT 643 consensus_14022#3 GGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGT-ATGTATTTATT 365 consensus_14022#1 GAAATTTGAAAACTATTCCGGGAAACATATCATGAAAAAGGCTTTCGTGAGGCATGGAGC 725 * * ** ** ** * * * * * * **** * * ** * consensus_14022#0 TTCCTAGTTTTCAAGGTGTGGGG-AAGTGATG---TTGGAGAATTG-AACTATTTT--CT 1906 consensus_14022#2 TTCCTAGNTTTCAAGGTGTGGGGGAAGTGATGG--TTGGAGAATTGGAACTATTTTT-CT 700 consensus_14022#3 TTCCTAGTTTTCAAGGTGTGGGG-AAGTGATG---TTGGAGAATTG-AACTATTTT--CT 418 consensus_14022#1 ATTTTTCTTTAAAAAAGAACCTGTGAGTCATGAAACTGATGTGTTTCACCACTACCAATT 785 * * ** ** * *** *** ** * ** * * * * consensus_14022#0 CATG-----TG-TTTAGGTATTGATTGATTTAATTTTATCTTATGTGCAGAGTGAAAAAT 1960 consensus_14022#2 CATG-----NGGTTTAGGTATTGATTGATTTAAATTT----------------------- 732 consensus_14022#3 CATG-----TG-TTTAGGTATTGATTGATTTAATTTTAAAAAAAAAAAAAATTATAATAA 472 consensus_14022#1 CGTGGTTGCTATCTGAGGGAAAGCCATAATTTGTTCCNATATACTTATAATACACTGTAA 845 * ** * *** * * * ** * consensus_14022#0 TTGTATCTCCAAAAAAAAAAAAAAAA 1986 consensus_14022#2 -------------------------- consensus_14022#3 AAA----------------------- 475 consensus_14022#1 CATACTCACTGTGTCC---------- 861 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||