These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1958 fasta sequence [GATTGCCGCTGGTGGC--AATCTTCTTCTTGTTGGACCAAACCCTAGCTAGCAGCAGCAACCATGGCAAACCCTAGGCCTCCCTATGTGTTGCTGGAGAGAGTAGTGTTTTTCGGAGGACGCGAGTTACCCGACGGCACATGGAAAGATGCCGCA-G---T-A-GG-T-CATCGGATGGAGCAGAGCGCGGC-TGCTGAGTCGGCGAGAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGATCCTCCGCAAGTGAGCTCCCTGCGGATGATGTCGCCGACGCCCGCGCA-CG-GCAGCAGC-TGGGATCCATCCGCGACGGCGACATCGCCAGCACCCACAAGGGCATCGTCGTCATCTACGCCGGCTTCTACCGACCAGGCTGCTCCGATGACCTCGGGGGATGCTACCTCCTCTACGACGCCCCCACCAACGCCCTCACCGCCATCCCCCCGCTGCCCGACTCGCCTCGCTTCCCCACCTTGCTACACCTCGGCCGCACCGCCGTCCTCGTCGACGCCTCCCGCTCTGCCGATGATTACATCCTCGCCGATATCGTCACCAACTCCGGCCTGGGCCTCCCCGAAGCCACCATCTTCGCATGGTCATCGCTGACCATGAAGAAGAGCGGCGGCGAGTGGGTCAAGTCCTCCATTCCCCGCCTCCCTCTCCCTGCACATCTATGTGGTCCAAAACACTTGTTCCAGATCGACCTCGCCTTCTCCCTGGACAGCGGCCGCATCTGCTGGGTTGATCTCCTACAGGGCATCTTGTTCTGCGACCGCATCTTGGCACCGGATGGCCCCAAGTTGGGGTTCATTCCGTTGCCCACTGGGTATTGCATCGATGTCCATCACAGGCTCCGCCATCAGATGATGCCACTAGCCCGGCGTTCCATGGCCTGCGTCTCTGGCGCCGTCAAGTTTGTCGCCTTGGTTGGCTTGGAAGATATTCATTGCCCCCCCAATGAGGTGATGCTCAAGACATGGGTTCTGTCCCCTGATTTCAAGGAGTGGAAGGAGGATAGCAGGTCCTTATCTGTGGAAGAGATGTGGGCAAGTGAGAGCTTCAAGCAAATGGGGTTGCCATGTGTTGTACCAGTTTCCCCTGTCCTCAGCCTGACCCAAGATGGGGTAATGTATACCATTCTGAATGTCATCGAGCAGGTACCTGCACAAGTTGATGAATTTGGGATCGTCGTTGTCGATGATGACCTGGTGCCCATTGCCAATTATATGATCCGCTTCGACATTCGGCGAAA-CAAGGTCCT-GTCC-TCC-ACAAAGATATCTCAA--CATGGTG-AATTG-CAGTGGCTTATA-CCCAATCT-CATTG-CCACTGACTTCACTGCATACCTACAGGACCACCAGAGAGCTGAAGAAGCAGGCAAGGTAGGAGCAAGCGCCAAGGGGAAGCGCAAGCAGATGGAGTACTACTGAATGATATGTAGTATATTTCTGCTATTTATCATGCACATAACATATCGCTTTTTTTAGCTTACATCCTGTGACTGTGAGATGTAAGGTCAAATGTGTTTAGGTTAACCATCAGAGCTTATTTTGTCACTACCAGACCTTATTTTAATGACTAAGCCTAGCAGTTAAACTGAATGGTAACCAGTATGTATGTGTAATCATCGTGGATTTATGTCATACTACTAATAGTGTTGGGCTCTTCAAATCCAACATTGTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTGGTTTGGCGTTTCTTAAAAAAGGGGAAATTTGGGGGGGGAAAAAAAAATTCCCCCTAAAGGGGGGGGTTTAAAAAATAAGGGGGGGGGGTTTAAAAAAGGGGGGAGGGGAAAAAACCGGGGGTTAACAAAAAAAAAGGGTTTGGAAAAAAATCCCTTTTTCCAAAGGGGGGA] [+] EMBL AU064050 [ ATTGCCGCTGGTGGC AATCTTNTTCTTGTTGGACCAAACCCTAGCTAGCAGCAGCAACCATGGCAAACCCTAGGCCTCCCTATGTTTTGCTGGAGANAGTAGTGTTTTTCGGAGGACGCGAGTTACCCGACGGCACATGGAAANATGCCGCANA TAA GT T CATCGGATGGAGCAGAGCGCGGC TGCTGAGTCGGCGAGAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGATCCTCCGCAAGTAAGCTCCCTGCGGATNATGTCGCCGACGCCCGCGCA CG GCA NAGC TGGGATCCATCCGCNACGGCGACATCGCCAGCAACCACAAGGGCATCGTC ] [+] EMBL AU065021 [ ATTGCCGCTGGTGGC AATCTTCTTCTTGTTGGACCAAACCCTAGCTAGCAGCAGCAACCATGGCAAACCCTAGGCCTCCCTATGTGTTGCTGGAGAGAGTAGTGTTTTTCGGAGGACGCGAGTTACCCGACGGCACATGGAAAGATGCCGCA GA T A NG T CATCGGATGGAGCAGAGCGCGGCTTGCTGAGTCGGCGAGAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGATCCTCCG AAGTGAGCTTCCTTCGGATGATGTCGCCGACGGCCGC ] [+] EMBL AU065059 [ ATTGCCGCTGGTGGC AATCTTCTTCTTGTTGGACCAAACCCTAGCTAGCAGCAGCAACCATGGCAAACCCTAGGCCTCCCTATGTGTTGCTGGAGAGAGTAGTGTTTTTCGGAGGACGCGAGTTACCCGACGGCACATGGAAAGATGCCGCA GA T ATGN T CATCGGATGGAGCAGAGCGCGGC TGCTGAGTCGGCGAGAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGATCCTCCGCAAGTGAGCTCCCTGCGGATGATGTCGCCGACGGCCGCGCA CG GCAG AGCTTGGGATCCATCCGCGACGGCGACATCG CAGCACCCACAAGGGNATCGTCGTCATCTACGGCGGTTTnt ] [+] EMBL C74583 [ TTGCCGCTGGTGGC AATCTTCTTCTTGTTGGACCAAACCCTAGCTAGCAGCAGCAACCATGGCAAACCCTAGGCCTCCCTATGTGTTGCTGGAGAGAGTAGTGTTTTTCGGAGGACGCGAGTTACCCGACGGCACATGGAAAGATGCCGCA N T A GGTT CATCGGATGGAGCAGAGCGCGGC TGCTGAGTCGGCGAGAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGATCCTCCGCAAGTGAGCTCCCTNCGGATGAT ] [+] EMBL AK066557 [ GCCGCTGGTGGC AATCTTCTTCTTGTTGGACCAAACCCTAGCTAGCAGCAGCAACCATGGCAAACCCTAGGCCTCCCTATGTGTTGCTGGAGAGAGTAGTGTTTTTCGGAGGACGCGAGTTACCCGACGGCACATGGAAAGATGCCGCA GGCAT A G T CATCGGATGGAGCAGAGCGCGGC TGCTGAGTCGGCGAGAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGATCCTCCGCAAGTGAGCTCCCTGCGGATGATGTCGCCGACGCCCGCGCA CGCGCAGCAGC TGGGATCCATCCGCGACGGCGACATCGCCAGCACCCACAAGGGCATCGTCGTCATCTACGCCGGCTTCTACCGACCAGGCTGCTCCGATGACCTCGGGGGATGCTACCTCCTCTACGACGCCCCCACCAACGCCCTCACCGCCATCCCCCCGCTGCCCGACTCGCCTCGCTTCCCCACCTTGCTACACCTCGGCCGCACCGCCGTCCTCGTCGACGCCTCCCGCTCTGCCGATGATTACATCCTCGCCGATATCGTCACCAACTCCGGCCTGGGCCTCCCCGAAGCCACCATCTTCGCATGGTCATCGCTGACCATGGAGAAGAGCGGCGGCGGGTGGGTCAAGTCCTCCATTCCCCGCCTCCCTCTCCCTGCACATCTATGTGGTCCAAAACACTTGTTCCAGATCGACCTCGCCTTCTCCCTGGACAGCGGCCGCATCTGCTGGGTTGATCTCCTACAGGGCATCTTGTTCTGCGACCGCATCTTGGCACCGGATGGCCCCAAGTTGGGGTTCATTCCGTTGCCCACTGGGTATTGCATCGATGTCCATCACAGGCTCCGCCATCAGATGATGCCACTAGCCCGGCGTTCCATGGCCTGCGTCTCTGGCGCCGTCAAGTTTGTCGCCTTGGTTGGCTTGGAAGATATTCATTGCCCCCCCAATGAGGTGATGCTCAAGACATGGGTTCTGTCCCCTGATTTCAAGGAGTGGAAGGAGGATAGCAGGTCCTTATCTGTGGAAGAGATGTGGGCAAGTGAGAGCTTCAAGCAAATGGGGTTGCCATGTGTTGTACCAGTTTCCCCTGTCCTCAGCCTGACCCAAGATGGGGTAATGTATACCATTCTGAATGTCATCGAGCAGGTACCTGCACAAGTTGATGAATTTGGGATCGTCGTTGTCGATGATGACCTGGTGCCCATTGCCAATTATATGATCCGCTTCGACATTCGGCGAAA CAAGGTCCT GTCC TCC ACAAAGATATCTCAA CATGGTG AATTG CAGTGGCTTATA CCCAATCT CATTG CCACTGACTTCACTGCATACCTACAGGACCACCAGAGAGCTGAAGAAGCAGGCAAGGTAGGAGCAAGCGCCAAGGGGAAGCGCAAGCAGATGGAGTACTACTGAATGATATGTAGTATATTTCTGCTATTTATCATGCACATAACATATCGCTTTTTTTAGCTTACATCCTGTGACTGTGAGATGTAAGGTCAAATGTGTTTAGGTTAACCATCAGAGCTTATTTTGTCACTACCAGACCTTATTTTAATGACTAAGCCTAGCAGTTAAACTGAATGGTAACCAGTATGTATGTGTAATCATCGTGGATTTATGTCATACTACTAATAGTGTTGGGCTCTTCAAATCCA ] [+] EMBL C26917 [ggtcnctGCTGGTGGCTGCAT TNCTTCTTGTTGGACCAAACCCTAGCTAGCAGCAGCAACCATGGCAAACCCTAGGCCTCCCTATGTTTTGCTGGAGANAGTAGTGTTTTTNGGAGGACGCGAGTTACCCGACGGCACATGGAAANATGCCGCACN T ANGG T CATCGGATGGAGCAGAGCGCGGC TGCTGAGTCGGCGANAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGATCCTCCGCAAGT ] [+] EMBL C73180 [ TTGTTGGACCAAACCCTAGCTAGCAGCAGCAACCATGGCAAACCCTAGGCCTCCCTATGTNTTGCTGGAGAGAGTAGTGTTTTTCGGAGGACGCGAGTTACCCGACGGCACATGGAAAGATGCCGCA N T A GN T CATCGGATGGAGCAGAGCGCGGC TGCTGAGTCGGCGAGAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGATCCTCCGCAAGTAAGCTCCCTGCGGATGATGTCGCCGACGNCCGCGCA CG GCA NAGC TGGGATCCATCCGCGACGGCGACATCGCCAGCANCCACAAGGGCATCGTCGTCATCTACGCCGGCTTCTACCGACCAGGCTGCTCCGATGACCTCGGGGGATGCTACCTCCTNTACGACGGCCCCAACAACGGCCTTAACGCCAT CCCCCGTTGCCCGATTTG CTTG TTTCCCAACTTGnt ] [+] EMBL C73623 [ GTTGGACCAAACCCTAGCTAGCAGCAGCAACCATGGCAAACCCTAGGCCTCCCTATGTGTTGCTGGAGAGAGTAGTGTTTTTCGGAGGACGCGAGTTACCCGACGGCACATGGAAAGATNCCGCA N A GN TNCATCGGATGGAGCAGA NNNGGC TGCTGAGTCNGCGAGAGGCGATGGAGGCGATGGAACCCCATNCCTTNCTCNCCGATCCTCCGCAAGTGAGCTCCCTGCNGATGATGTCGCCGACGCCCGCGCA C GCAGCAGC TGGGATCCATCCGCGACGG GACATCG CAGCACCCACAAGGGCATCGTC ] [+] EMBL AU094932 [ TGCGGATGATGTCG CGA GCCGGAAAACCGCGCAGCAGC TGGGATCCATCCGCGACGGCGACATCGCCAGCACCCACAAGGGNATCGTCGTNATCTACGCCGGCTTCTACCGACCAGGCTGCTCCGATGACCTCGGGGGATGCTACTTCCTCTACGACGCCCCNACCAACGCCCTCACCGCNATCCCCCCGCTGCCCGACTCGCCTCGCTTCCCCACCTTGCTACACCTCGGCCGCACCGCCGTCCTCGTCGACGCCTCCCGCTCTGCCGATGATTACATCCTCGCCGATATCGTCACCAACTCCGGNCTGGGCCTCCCCGAAGCCACCATCTTCGCATGGTCATCGCTGACCATGAAGAAGAGCGGCGGCGAGTGGGTCAAGTCCTCCATTCCCCGCCTCCGGGGCCCTGCACATCTATGTGGTCCAAAACACTTGTTCCAGATCGACCTCGCCTTC ] [+] EMBL AU108161 [ ACCTCGGCCGCACCGCCGTCCTCGTCGACGCCTCCCGCTCTGCCGATGATTACATCCTCGCCGATATCGTCACCAACTCCGGCCTGGGCCTCCCCGAAGCCACCATCTTCGCATGGTCATCGCTGACCATGAAGAAGAGCGGCGGCGAGTGGGTCAAGTCCTCCATTCCCCGCCTCCCTCTCCCTGCACATCTATGTGGTCCAAAACACTTGTTCCAGATCGACCTCGCCTTC ] [+] EMBL OSC244 [ TGCTGGGTTGATCTCCTACAGGGCATCTTGTTCTGCGACCGCATCTTGGCACCGGATGGCCCCAAGTTGGGGTTCATTCCGTTGCCCACTGGGTATTGCATCGATGTCCATCACAGGCTCCGCCATCAGATGATGCCACTAGCCCGGCGTTCCATGGCCTGCGTCTCTGGCGCCGTCAAGTTTGTCGCCTTGGTTGGCTTGGAAGATATTCATTGCCCCCCCAATGAGGTGATGCTCAAGACATGGGTTCTGTCCCCTGATTTCAAGGAGTGGAAGGAGGATAGCAGGTCCTTATCTGTGGAAGAGATGTGGGCAAGTGAGAGCTTCAAGCAAATGGGGTTGCCATGTGTTGTACCAGTTTCCCCTGTCCTCAGCCTGACCCAAGATGGGGTAATGTATACCATTCTGAATGTCATCGAGCAGGTACCTGCACAAGTTGATGAATTTGGGATCGTCGTTG ] [+] EMBL AU094390 [ GAAACCAAGGTCCTGGTCCTTCCNACAAGGATATCTCAAACCATGGTGAAATTGCCAGTGGCTTATACCCCAATCTCCATTGCCCACTGACTTCACTGCATACCTACAGGACCACCAGAGAGCTGAAGAAGCAGGCAAGGTAGGAGCAAGCGCCAAGGGGAAGCGCAAGCAGATGGAGTACTACTGAATGATATGTAGTATATTTCTGCTATTTATCATGCACATAACATATCGCTTTTTTTAGCTTACATCCTGTGACTGTGAGATGTAAGGTCAAATGTGTTTAGGTTAACCATCAGAGCTTATTTTGTCACTACCAGACCTTATTTTAATGACTAAGCCTAGCAGTTAAACTGAATGGTAACCAGTATGTATGTGTAATCATCGTGGATTTATGTCATACTACTAATAGTGTTGGGCTCTTCAAATCCAACATTGTACCAA ] [+] EMBL CA764576 [ GCAGATGGAGTACTACTGAATGATATGTAGTATATTTCTGCTATTTATCATGCACATAACATATCGCTTTTTTTTGCTTACATCCTGTGACTGTGAGATGTAAGGTCAAATGTGTTTAGGTTAACCATCAGAGCTTATTTTGTCACTACCAGACCTTATTTTAATGACTAAGCCTAGCAGTTAAACTGAATGGTAACCAGTA ] [+] EMBL CF319442 [ ATCATCGTGGATTTATGTCATACTACTAATAGTGTTGGGCTCTTCAAATCCAACATTGTNCCANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTGGTTTGGCGTTTCTTAAAAAAGGGGAAATTTGGGGGGGGAAAAAAAAATTCCCCCTAAAGGGGGGGGTTTAAAAAATAAGGGGGGGGGGTTTAAAAAAGGGGGGAGGGGAAAAAACCGGGGGTTAACAAAAAAAAAGGGTTTGGAAAAAAATCCCTTTTTCCAAAGGGGGGA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||