These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1450 fasta sequence [CCACCGTCCCAACGCATTTCCTTCCTCCTCGCCTCCGACTCAAATCCACCCCGCGTCTCCGCCTCACCGCAGACAGAGAGAGAGAGGCCAAGCATGGCGGCCGCCACCGCCGAACCCCTCGCCGTCGCCGTCGCCGTCGCCCACACCGCCACCGCCGGCACGGACCACTCGCCGGCCCCGCTGCCTCCCCCTCCCCCGCACTGCAATTACAAAAGCAAATTGCAAGAGTATCTTCAGCAGGCAAATAAGCAGTTGCCAATCTACTGTACCAAGTGCAAGGGTGAACACCATCAGCTTAAGTTCAAATCCACTGTCATGGTGGATGGTGAGGAGTTTTCATCCACTTTTTGTCATAGACGTGTGAAGGACGCTGAGCAGGATGCTGCTAAAGTAGCCTATGATACCTTGCTTGAAAGGAAAGAGACTGAGACTGATGATACAGATGTGTTTGAGCTCATTGATCAGGATGTTGTGTTCAGCAAATCAATTCTTCATGAATATACTACTAAGACAAAAACTGATCAACCAGAATACTCTGTAACCAAGACAGAAGGGTCCGTGACTCCATATGTTTCATCTGTGTCATTTGCTGGGCATACTTATACTGGTGGAGCTGCAAGAAACAAGAAGGACGCAGAGCAGAAGGCAGCTCGTGCTGCGGTCAAGTCACTTTTAGCTACAAATTACACTTCCATGGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGGGCAATCTCACCTTCTGGGTACAACAAAGGAATCGACAGTAATCCAACAAACAAGAAACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATATGATGGAGAAATCGACATGCTTTCTGTGCCACAAGCTCTATTTGCCCCTCTAGTCGCTGCTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCAC-AGTAGCATCTTGCCCTTCAC-AGCCTGAGGAGTTTGGA-TTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGATATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTTTTCTTCTGTAATTAGACCAACAATATCAGTCATGTG---GTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACCCCCGTCCGTCCGTGCTAGGCTGGTAGTTTTATGGTTGTTATCCACTCTGTTCATGTGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGATGCATTTATCCTAATTGCTTGTCT] [+] EMBL AK065829 [CCACCGTCCCAACGCATTTCCTTCCTCCTCGCCTCCGACTCAAATCCACCCCGCGTCTCCGCCTCACCGCAGACAGAGAGAGAGAGGCCAAGCATGGCGGCCGCCACCGCCGAACCCCTCGCCGTCGCCGTCGCCGTCGCCCACACCGCCACCGCCGGCACGGACCACTCGCCGGCCCCGCTGCCTCCCCCTCCCCCGCACTGCAATTACAAAAGCAAATTGCAAGAGTATCTTCAGCAGGCAAATAAGCAGTTGCCAATCTACTGTACCAAGTGCAAGGGTGAACACCATCAGCTTAAGTTCAAATCCACTGTCATGGTGGATGGTGAGGAGTTTTCATCCACTTTTTGTCATAGACGTGTGAAGGACGCTGAGCAGGATGCTGCTAAAGTAGCCTATGATACCTTGCTTGAAAGGAAAGAGACTGAGACTGATGATGCAGATGTGTTTGAGCTCATTGATCAGGATGTTGTGTTCAGCAAATCAATTCTTCATGAATATACTACTAAGACAAAAACTGATCAACCAGAATACTCTGTAACCAAGACAGAAGGGTCCGTGACTCCATATGTTTCATCTGTGTCATTTGCTGGGCATACTTATACTGGTGGAGCTGCAAGAAACAAGAAGGACGCAGAGCAGAAGGCAGCTCGTGCTGCGGTCAAGTCACTTTTAGCTACAGATTACACTTCCATGGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGGGCAATCTCACCTTCTGGGTACAACAAAGGAATCGACAGTAATCCAACAAACAAGAAACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATATGATGGAGAAATCGACATGCTTTCTGTGCCACAAGCTCTATTTGCCCCTCTAGTCGCTGCTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCAC AGTAGCATCTTGCCCTTCAC AGCCTGAGGAGTTTGGA TTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGATATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTTTTCTTCTGTAATTAGACCAACAATATCAGTCATGTG GTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACCCCCGTCCGTCCGTGCTAGGCTGGTAGTTTTATGGTTGTTATCCACTCTGTTCATGTGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGATGCATTTATCCTAATTGCTTGTCT] [+] EMBL CB967336 [ cCCCTCGCCGTCGCCGTCGCCCACACCGCCACCGCCGGCACGGACCACTCGCCGGCCCCGCTGCCTCCCCCTCCCCCGCACTGCAATTACAAAAGCAAATTGCAAGAGTATCTTCAGCAGGCAAATAAGCAGTTGCCAATCTACTGTACCAAGTGCAAGGGTGAACACCATCAGCTTAAGTTCAAATCCACTGTCATGGTGGATGGTGAGGAGTTTTCATCCACTTTTTGTCATAGACGTGTGAAGGACGCTGAGCAGGATGCTGCTAAAGTAGCCTATGATACCTTGCTTGAAAGGAAAGAGACTGAGACTGATGATACAGATGTGTTTGAGCTCATTGATCAGGATGTTGTGTTCAGCAAATCAATTCTTCATGAATATACTACTAAGACAAAAACAGATCAACCAGAATACTCTGTAACCAAGACAGAAGGGTCCGTGACTCCATATGTTTCATCTGTGTCATTTGCTGGGCATACTTATACTGGTGGAGCTGCAAGAAACAAGAAGGACGCAGAGCAGAANGCAGCTCGTGCTGCGGTCAAGTCACTTTTAGCTACAAATTACACTTCCATGGCGAAAATCGTTAGATCGAAGGAAAAGCTCATCAGGCCAATCTCACCTTCTGGGTACAACAAAGGATTCGACAGTAATCCAACCAACAAGAAACTTCCTTTTGCTCCT ] [-] EMBL AU094355 [ CCCACACCGCCACCGCCGGCACGGACCACTCGCCGGCCCCGCTGCCTCCCCCTCCCCCGCACTGCAATTACAAAAGCAAATTGCAAGAGTATCTTCAGCAGGCAAATAAGCAGTTGCCAATCTACTGTACCAAGTGCAAGGGTGAACACCATCAGCTTAAGTTCAAATCCACTGTCATGGTGGATGGTGAGGAGTTTTCATCCACTTTTTGTCATAGACGTGTGAAGGACGCTGAGCAGGATGCTGCTAAAGTAGCCTATGATACCTTGCTTGAAAGGAAAGAGACTGAGACTGATGATACAGATGTGTTTGAGCTCATTGATCAGGATGTTGTGTTCAGCAAATCAATTCTTCATGAATATACTACTAAGACAAAAACTGATCAACCAGAATACTCTGTAACCAAGACAGAAGGGTCCGTG ] [+] EMBL CF322981 [ CAAATTGCAAGAGTATCTTCAGCAGGCAAATAAGCAGTTGCCAATCTACTGTACCAAGTGCAAGGGTGAACACCATCAGCTTATTTTTTAATCCACTGTCATGGTGGATGGTGAGGAGTTTTCATCCACTTTTTGTCATAGACGTGTGAAGGACGCTGAGCAGGATGCTGCTAAAGTAGCCTATGATACCTTGCTTGAAAGGAAAGAGACTGAGACTGATGATACAGATGTGTTTGAGCTCATTGATCAGGATGTTGTGTTCAGCAAATCAATTCTTCATGAATATACTACTAAGACAAAAACTGATCAACCAGAATACTCTGTAAC ] [-] EMBL CB679250 [ GCAGCTCGTGCTGCGGTCAAGTCACTTTTAGCTACAAATTACACTTCCATGGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGGGCAATCTCACCTTCTGGGTACAACAAAGGAATCGACAGTAATCCAACAAACAAGAAACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATATGATGGAGAAATCGACATGCTTTCTGTGCCACAAGCTCTATTTGCCCCTCTAGTCGCTGCTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCAC AGTAGCATCTTGCCCTTCAC AGCCTGAGGAGTTTGGA TTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGATATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTTTTCTTCTGTAATTAGACCAACAATATCAGTCATGTG GTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACCCCCGTCCGTCCGTGCTAGGCTGGTAGTTTTATGGTTGTTATCCACTCTGTTCATGTGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGATGCATTTATCCTAATTGCTTGTC ] [+] EMBL CA998369 [ CAAGTCACTTTTAGCTACAAATTACACTTCCATGGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGGGCAATCTCACCTTCTGGGTACAACAAAGGAATCGACAGTAATCCAACAAACAAGAAACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATATGATGGAGAAATCGACATGCTTTCTGTGCCACAAGCTCTATTTGCCCCTCTAGTCGCTGCTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCAC AGTAGCATCTTGCCC ] [+] EMBL CF197287 [ GTAATCCAACAAACAAGAAACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATATGATGGAGAAATCGACATGCTTTCTGTGCCACAAGCTCTATTTGCCCCTCTAGTCGCTGCTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCAC AGTAGCATCTTGCCCTTCAC AGCCTGAGGAGTTTGGA TTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGACATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTTTTCTTCTGTAATTAGACCAACAATATCAGTCATGTG GTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACTCCCGTCCGTCCGTGCTNNNNTGGTAGTNNNATGGTTGTTATCCACTCTGTTCATGTGctc ] [-] EMBL BI306182 [ cGCTCTGTTTGCCCCTCTAGTCGCTGCTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCAC AGTAGCATCTTGCCCTTCAC AGCCTGAGGAGTTTGGA TTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGACATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTTTTTTTTTTCTGTAATTAGACCAACAATATCAGTCATGTGGTAGTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACTCCCGTCCGTCCGTGCTAGGCTGGTAGTTTTATGGTTGTTATCCACTCTGTTCATGTGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAAT ATTTc ] [-] EMBL OSC165 [ CANAGGTCAAGGAAGAAAGAG TGCACAAGTAGCATCTTGCCCTTCACAAGCCTGAGGAGTTTGGANTCCCATCTTTCTGTGCTGNAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGATATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTTTTCTTCTGTAATTAGACCAACAATATCAGTCATGTG GTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACCCCCGTCCGTCCGTGCTAGGCTGGTAGTTTTATGGTTGTTATCCACTCTGTTCATGTGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGA ] consensusID : consensus_14033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence [CAATCTTTAAGGTGAACACCATCAGCTTAAGTTCAAATCCACTGTCATGGTGGATGGTGAGTGAGTTTTCATCCACCTTTTTGTCATAGACGTGTGAAGGACGCTGAGCATGATGCTGCTAAAGTAGCCTATGATACCTTGCTTGAAAGGAAAGAGACTGATACTGATGATACAGATGTGTTTGAGCTCATTGATCAAGATGTTGTGTTCAGCAAATCAATTCTTCATGAATATACTACTAAGACAAAAACTGATCAACCAGAATACTCTGTAACCAAGACAGAAGGGTCCGTGACTCCATATGTTTCATCTGTGTCATTTGCTGGGCATACTTATACTGGTGGAGCTGCAAGAAACAAGAAGGACGCACAGCAGAATGCAGCTCGTGCTGCGGTCAAGTCACTTTTATCTACAAATTACACTTCCATGGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGGGCAATCTCACCTTCTGGGTACAACAAAGGAATCGACAGTAATCCAACAAACAAGAAACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATATGATGGAGAAATCGACATGCTTTCTGTGCCACAAGCTCTATTTGCCCCTCTAGTCGCTGCTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCACAGTAGCATCTTGCCCT] [+] EMBL CB679249 [CAATCTTTAAGGTGAACACCATCAGCTTAAGTTCAAATCCACTGTCATGGTGGATGGTGAGTGAGTTTTCATCCACCTTTTTGTCATAGACGTGTGAAGGACGCTGAGCATGATGCTGCTAAAGTAGCCTATGATACCTTGCTTGAAAGGAAAGAGACTGATACTGATGATACAGATGTGTTTGAGCTCATTGATCAAGATGTTGTGTTCAGCAAATCAATTCTTCATGAATATACTACTAAGACAAAAACTGATCAACCAGAATACTCTGTAACCAAGACAGAAGGGTCCGTGACTCCATATGTTTCATCTGTGTCATTTGCTGGGCATACTTATACTGGTGGAGCTGCAAGAAACAAGAAGGACGCACAGCAGAATGCAGCTCGTGCTGCGGTCAAGTCACTTTTATCTACAAATTACACTTCCATGGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGGGCAATCTCACCTTCTGGGTACAACAAAGGAATCGACAGTAATCCAACAAACAAGAAACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATATGATGGAGAAATCGACATGCTTTCTGTGCCACAAGCTCTATTTGCCCCTCTAGTCGCTGCTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCACAGTAGCATCTTGCCCT] consensusID : consensus_14033#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CATGGCGGCCCGAGTGCCCATTCTCTCTAGCAGCGCTCGCCCCCCCTTCCGATACTCGCGCTCTCTGCATGGAGCAAATCGGCATGCTTTCTGTCCCACAAGCTCTATTTGCGCCTCTAGTCGGTGCTGGGGAACCCAAAGTCGGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCCCAAGGATACCAAAGTCAGAGGCCCAGAGGTCAAGGAAGAAAGAGTTGCACAGTAGCATCTTGCCCTTCACAGCCTGAGGAGTTTGGATTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGACATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTTTTCTTCTGTAATTAGCCCAACAATATCAGTCATGTGGTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACTCCCGTCCGTCCGTGCTAGGCTGGTAGTTTTATGGTTGTATCCACTCTGTTCATGTGCTCTGGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGATGCATTTATCCTAAAAAAAAAAAAAA] [-] EMBL CA761899 [CATGGCGGCCCGAGTGCCCATTCTCTCTAGCAGCGCTCGCCCCCCCTTCCGATACTCGCGCTCTCTGCATGGAGCAAATCGGCATGCTTTCTGTCCCACAAGCTCTATTTGCGCCTCTAGTCGGTGCTGGGGAACCCAAAGTCGGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAAGAAGCCCAAGGATACCAAAGTCAGAGGCCCAGAGGTCAAGGAAGAAAGAGTTGCACAGTAGCATCTTGCCCTTCACAGCCTGAGGAGTTTGGATTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGACATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTTTTCTTCTGTAATTAGCCCAACAATATCAGTCATGTGGTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACTCCCGTCCGTCCGTGCTAGGCTGGTAGTTTTATGGTTGTATCCACTCTGTTCATGTGCTCTGGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGATGCATTTATCCTAAAAAAAAAAAAAA] consensusID : consensus_14033#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [GGGGCTCCTATAAAATTACACNCNCTTCCATATTNAAACTATCTGNTGGAGAAATNGACATGCTTTCTGTGCCACAAGCTCTATTTGNCCNTCTAGTCGCTGNTGNGGAACCCAAAGNCAGACCAGCAGCTGAGCCAGCTTNCAACCCATCTGAGCAAGCTGNCCATGNATNAAAGAAGCACAAGGATAACAAAGNCAGAGGACCAGNGGTCAAGGAAGAAAGAGTTGCACAGTNNCATCTTGCCCTTCACAGNCTGAGGNGNTNGGATNCCATCTTTCTGTGCTGGAGGTTGACAGGCTNTGNTGACAACATGNAGCTGNGTAGGTGACATGCTANGCANCTAGTGATCATCAGTACAATGNGCGGTGNTCAAATGGCATTAGATTGNAGGCTGTTTNCTTTTNTTCTGTGATTAGACCAACAATATCAGTCATGNGNGAGTAGTAGTAGTGGCCGAACAAAACAGTNNCAACGCCATGAANNATGAACTACTNNCGCCCGTCCGTGCTAGGCTGGCAGNTNTATGGATGGTATCCACTCTGTTCATGNGCTCTGNNGNTTAGTTCAAAGAAAANCTGTTCCGAGTCNGGATGATCAGCNAATGATTGTGTTCNTCTATGCACTGANAATNCAGATGCATNNATT] [+] EMBL CA766599 [GGGGCTCCTATAAAATTACACNCNCTTCCATATTNAAACTATCTGNTGGAGAAATNGACATGCTTTCTGTGCCACAAGCTCTATTTGNCCNTCTAGTCGCTGNTGNGGAACCCAAAGNCAGACCAGCAGCTGAGCCAGCTTNCAACCCATCTGAGCAAGCTGNCCATGNATNAAAGAAGCACAAGGATAACAAAGNCAGAGGACCAGNGGTCAAGGAAGAAAGAGTTGCACAGTNNCATCTTGCCCTTCACAGNCTGAGGNGNTNGGATNCCATCTTTCTGTGCTGGAGGTTGACAGGCTNTGNTGACAACATGNAGCTGNGTAGGTGACATGCTANGCANCTAGTGATCATCAGTACAATGNGCGGTGNTCAAATGGCATTAGATTGNAGGCTGTTTNCTTTTNTTCTGTGATTAGACCAACAATATCAGTCATGNGNGAGTAGTAGTAGTGGCCGAACAAAACAGTNNCAACGCCATGAANNATGAACTACTNNCGCCCGTCCGTGCTAGGCTGGCAGNTNTATGGATGGTATCCACTCTGTTCATGNGCTCTGNNGNTTAGTTCAAAGAAAANCTGTTCCGAGTCNGGATGATCAGCNAATGATTGTGTTCNTCTATGCACTGANAATNCAGATGCATNNATT] consensusID : consensus_14033#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 516 fasta sequence [CANGATTCGCACGAGGAAAGATTGCNCAGTAGCATCTTGCCCTTCACAGCCTGAGGAGTTTGGATTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTANGTGATATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTCCTTTTCTTCTGTAATTAGACCAACAATATCAGTCATGTGGTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACCCCCGTCCGTCCGTGCTANGCTGGTAGTTTTATGGTTGTTATCCACTCTGTTCATGTGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGATGCATTTATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AA753031 [CANGATTCGCACGAGGAAAGATTGCNCAGTAGCATCTTGCCCTTCACAGCCTGAGGAGTTTGGATTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTANGTGATATGCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTCCTTTTCTTCTGTAATTAGACCAACAATATCAGTCATGTGGTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTACCCCCGTCCGTCCGTGCTANGCTGGTAGTTTTATGGTTGTTATCCACTCTGTTCATGTGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGATG ] [+] EMBL CF328588 [ CGTCCGTGCTAGGCTGGTAGTTTTATGGTTGTTATCCACTCTGTTCATGTGTGTTTAGTTCAAAGAAAATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGATGCATTTATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14033#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [AGAAGGCAGCTCGTGCTGCGGTCAAGTCACTTTTAGGTAACATGAGTTCCATTCTTCATGACTGAAAAAAAGGATCACCACCATCTTTCTTGAACTGCTTTTATTGTGTGACCAAACTTGCAAGAGTATAAGTTAACAACTAATAGTTCGGTTGGTCTTCCAGCTACAAATTACACTTCCATGGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGGGCAATCTCACCTTCTGGGTACAACAAAGGAATCGACAGTAATCCAACAAACAAGACACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATATGGTATGTTTAATTTGGTGTAACCAGCATGCTGTTTTTTCCAGTAAATCAATGCACCAAC] [+] EMBL CF305562 [AGAAGGCAGCTCGTGCTGCGGTCAAGTCACTTTTAGGTAACATGAGTTCCATTCTTCATGACTGAAAAAAAGGATCACCACCATCTTTCTTGAACTGCTTTTATTGTGTGACCAAACTTGCAAGAGTATAAGTTAACAACTAATAGTTCGGTTGGTCTTCCAGCTACAAATTACACTTCCATGGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGGGCAATCTCACCTTCTGGGTACAACAAAGGAATCGACAGTAATCCAACAAACAAGACACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATATGGTATGTTTAATTTGGTGTAACCAGCATGCTGTTTTTTCCAGTAAATCAATGCACCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 CCACCGTCCCAACGCATTTCCTTCCTCCTCGCCTCCGACTCAAATCCACCCCGCGTCTCC 60 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 GCCTCACCGCAGACAGAGAGAGAGAGGCCAAGCATGGCGGCCGCCACCGCCGAACCCCTC 120 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 GCCGTCGCCGTCGCCGTCGCCCACACCGCCACCGCCGGCACGGACCACTCGCCGGCCCCG 180 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 CTGCCTCCCCCTCCCCCGCACTGCAATTACAAAAGCAAATTGCAAGAGTATCTTCAGCAG 240 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 GCAAATAAGCAGTTGCCAATCTACTGTACCAAGTGCAAGGGTGAACACCATCAGCTTAAG 300 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 TTCAAATCCACTGTCATGGTGGATGGTGAGGAGTTTTCATCCACTTTTTGTCATAGACGT 360 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 GTGAAGGACGCTGAGCAGGATGCTGCTAAAGTAGCCTATGATACCTTGCTTGAAAGGAAA 420 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 GAGACTGAGACTGATGATACAGATGTGTTTGAGCTCATTGATCAGGATGTTGTGTTCAGC 480 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 AAATCAATTCTTCATGAATATACTACTAAGACAAAAACTGATCAACCAGAATACTCTGTA 540 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 ACCAAGACAGAAGGGTCCGTGACTCCATATGTTTCATCTGTGTCATTTGCTGGGCATACT 600 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 TATACTGGTGGAGCTGCAAGAAACAAGAAGGACGCAGAGCAGAAGGCAGCTCGTGCTGCG 660 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 GTCAAGTCACTTTTAGCTACAAATTACACTTCCATGGCGAAAATTGTTAGATCGAAGGAA 720 consensus_14033#1 ------------------------------------------------------------ consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 -----------------------------------------------------CATGGCG 7 consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 AAGCTCATCAGGGCAATCTCACCTTCTGGGTACAACAAAGGAATCGACAGTAATCCAACA 780 consensus_14033#1 ---------------------------------CAATCTTTAAGGTGAACACCATCAGCT 27 consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 GCCCGAGTGCCCATTCTCTCTAGCAGCGCTCG-CCCCCCCTTCCGATACTCGCGCTCTCT 66 consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 ---------------GGGGCTCCTATAAAATT-ACACNCNCTTCCATATTNAAACTATCT 44 consensus_14033#0 AACAAGAAACTTCCTTTTGCTCCTATAAAATTCACACCCCCTTCCATATTCAAACTATAT 840 consensus_14033#1 TAAGTTCAAATCCACTGTCATGGTGGATGGTGAGTGAGTTTTCATCCACCTTTTTGTCAT 87 consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 GCATGGAGCAAATCGGCATGCTTTCTGTCCCACAAGCTCTATTTGCGCCTCTAGTCGGTG 126 consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 GNT--GGAGAAATNGACATGCTTTCTGTGCCACAAGCTCTATTTGNCCNTCTAGTCGCTG 102 consensus_14033#0 GAT--GGAGAAATCGACATGCTTTCTGTGCCACAAGCTCTATTTGCCCCTCTAGTCGCTG 898 consensus_14033#1 AGACGTGTGAAGGACGCTGAGCATGATGCTGCTAAAGTAGCCTATGATACCTTGCTTGAA 147 consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 CTGGGGAACCCAAAGTCGGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTG 186 consensus_14033#4 ------------------------------------------------------------ consensus_14033#3 NTGNGGAACCCAAAGNCAGACCAGCAGCTGAGCCAGCTTNCAACCCATCTGAGCAAGCTG 162 consensus_14033#0 CTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTG 958 consensus_14033#1 AGGAAAGAGACTGATACTGATGATACAGATGTGTTTGAGCTCATTGATCAAGATGTTGTG 207 consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 TCCATGTATCAAAGAAGCCCAAGGATACCAAAGTCAGAGGCCCAGAGGTCAAGGAAGAAA 246 consensus_14033#4 ------------------------------------------CANGATTCGCACGAGGAA 18 consensus_14033#3 NCCATGNATNAAAGAAGCACAAGGATAACAAAGNCAGAGGACCAGNGGTCAAGGAAGAAA 222 consensus_14033#0 TCCATGTATCAAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAA 1018 consensus_14033#1 TTCAGCAAATCAATTCTTCATGAATATACTACTAAGACAAAAACTGAT-CAACCAGAATA 266 consensus_14033#5 -------------------------------AGAAGGCAGCTCGTGCTGCGGTCAAGTCA 29 * * consensus_14033#2 GAGTTGCACAGTAGCATCTTGCCCTTCACAGCCTGAGGAGTTTGGATTCCATCTTTCTGT 306 consensus_14033#4 AGATTGCNCAGTAGCATCTTGCCCTTCACAGCCTGAGGAGTTTGGATTCCATCTTTCTGT 78 consensus_14033#3 GAGTTGCACAGTNNCATCTTGCCCTTCACAGNCTGAGGNGNTNGGATNCCATCTTTCTGT 282 consensus_14033#0 GAGTTGCACAGTAGCATCTTGCCCTTCACAGCCTGAGGAGTTTGGATTCCATCTTTCTGT 1078 consensus_14033#1 CTCT---GTAACCAAGACAGAAGGGTCCGTGACTCCATAT--GTTTCATCTGTGTCATTT 321 consensus_14033#5 CTTTTAGGTAACATGAGTTCCATTCTTCATGACTGAAAAAAAGGATCACCACCATC-TTT 88 * * * * ** * * * * consensus_14033#2 GCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGACATGCTAAGCAGC 366 consensus_14033#4 GCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTANGTGATATGCTAAGCAGC 138 consensus_14033#3 GCTGGAGGTTGACAGGCTNTGNTGACAACATGNAGCTGNGTAGGTGACATGCTANGCANC 342 consensus_14033#0 GCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGATATGCTAAGCAGC 1138 consensus_14033#1 GCTGGGCATACTTATACTGGTGGAGCTGCAAGAAACA-AGAAGGACGCAC----AGCAGA 376 consensus_14033#5 CTTGAAC-TGCTTTTATTGTGTGACC------AAACT-TGCAAGA-GTAT----A--AGT 133 ** * * * * * * * * * consensus_14033#2 TAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTT 426 consensus_14033#4 TAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTT-CCTT 197 consensus_14033#3 TAGTGATCATCAGTACAATGNGCGGTGNTCAAATGGCATTAGATTGNAGGCTGTTTNCTT 402 consensus_14033#0 TAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTT 1198 consensus_14033#1 ATGCAGCTCGTGCTGCGGTCAAGTCACTTTTATCTAC---AAATTACA-----CTTCCAT 428 consensus_14033#5 TAACAACTAATAGTTCGGTTGGT---CTTCCAGCTAC---AAATTACA-----CTTCCAT 182 * * * * * * * *** * * * * consensus_14033#2 TTCTTCTGTAATTAGCCCAACAATATCAGTCATGTGGTAGTAGTAGTAGTGGCCGAACAA 486 consensus_14033#4 TTCTTCTGTAATTAGACCAACAATATCAGTCATGTGGTAGTAGTAGTAGTGGCCGAACAA 257 consensus_14033#3 TTNTTCTGTGATTAGACCAACAATATCAGTCATGNGNGAGTAGTAGTAGTGGCCGAACAA 462 consensus_14033#0 TTCTTCTGTAATTAGACCAACAATATCAGTCATGTGGTAGTAGTAGTAGTGGCCGAACAA 1258 consensus_14033#1 GGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGG--GCAATCTCACCTTCTGGGTAC 486 consensus_14033#5 GGCGAAAATTGTTAGATCGAAGGAAAAGCTCATCAGG--GCAATCTCACCTTCTGGGTAC 240 * **** * * * **** * * * * * * * * consensus_14033#2 AACAGTAGCAACGCCATGAAGT--ATGAACTACTCCCGTCCGTCCGTGCTAGGCTGGTAG 544 consensus_14033#4 AACAGTAGCAACGCCATGAAGT--ATGAACTACCCCCGTCCGTCCGTGCTANGCTGGTAG 315 consensus_14033#3 AACAGTNNCAACGCCATGAANN--ATGAACTACTNNCGCCCGTCCGTGCTAGGCTGGCAG 520 consensus_14033#0 AACAGTAGCAACGCCATGAAGT--ATGAACTACCCCCGTCCGTCCGTGCTAGGCTGGTAG 1316 consensus_14033#1 AACAAAGGAATCGACAGTAATCCAACAAACAAGAAACTTCCTTTTGCTC----CTATAAA 542 consensus_14033#5 AACAAAGGAATCGACAGTAATCCAACAAACAAGACACTTCCTTTTGCTC----CTATAAA 296 **** * ** ** ** * *** * * ** * * * ** * consensus_14033#2 TTTTATGGTTGT-ATCCACTCTGTTCATGTGCTCTGGTGTTTAGTTCAAAGAAAATCTGT 603 consensus_14033#4 TTTTATGGTTGTTATCCACTCTGTTCATGTG------TGTTTAGTTCAAAGAAAATCTGT 369 consensus_14033#3 NTNTATGGATGGTATCCACTCTGTTCATGNGCTCTGNNGNTTAGTTCAAAGAAAANCTGT 580 consensus_14033#0 TTTTATGGTTGTTATCCACTCTGTTCATGTG------TGTTTAGTTCAAAGAAAATCTGT 1370 consensus_14033#1 ATTCACACCC----CCTTCCATATTCAAAC-------TATATGATGGAGA-------AAT 584 consensus_14033#5 ATTCACACCC----CCTTCCATATTCAAAC-------TATATGGT----A-------TGT 334 * * * * * **** * * * * consensus_14033#2 TCCGAGTCGGGATGATCAGCAAATGAT-TTTGTTCTTCTATGCACTGAGAATCCAGATGC 662 consensus_14033#4 TCCGAGTCGGGATGATCAGCAAATGAT-TTTGTTCTTCTATGCACTGAGAATCCAGATGC 428 consensus_14033#3 TCCGAGTCNGGATGATCAGCNAATGAT-TGTGTTCNTCTATGCACTGANAATNCAGATGC 639 consensus_14033#0 TCCGAGTCGGGATGATCAGCAAATGAT-TTTGTTCTTCTATGCACTGAGAATCCAGATGC 1429 consensus_14033#1 CGACATGCTTTCTGTGCCACAAGCTCTATTTGCCCCTCTAGTCGCTGCTGAGGAACCCAA 644 consensus_14033#5 TTA-ATTTGGTGTAACCAGCATGCTGT-TTTTTCCAGTAAATCAATGC--ACCAAC---- 386 * * * * * * * * * * ** * * consensus_14033#2 ATTTATCCTAAAAAAAAAAAAAA------------------------------------- 685 consensus_14033#4 ATTTATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 488 consensus_14033#3 ATNNATT----------------------------------------------------- 646 consensus_14033#0 ATTTATCCTAATTGCTTGTCT--------------------------------------- 1450 consensus_14033#1 AGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATCAAA 704 consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------------------------------------------------------ consensus_14033#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------------- 516 consensus_14033#3 ------------------------------------------------------------ consensus_14033#0 ------------------------------------------------------------ consensus_14033#1 GAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCACAGTA 764 consensus_14033#5 ------------------------------------------------------------ consensus_14033#2 ------------ consensus_14033#4 ------------ consensus_14033#3 ------------ consensus_14033#0 ------------ consensus_14033#1 GCATCTTGCCCT 776 consensus_14033#5 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||