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Oryza sativa
cluster # 14037 cluster # 14037       Sequences # 15       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14037#0 length = 1022 sequences # 10  
consensus_14037#1 length = 428 sequences # 3  
consensus_14037#2 length = 381 sequences # 1  
consensus_14037#3 length = 240 sequences # 1  

consensusID : consensus_14037#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1022
fasta sequence
                              [AGACGTACTCCCTCCTTCCATTGTTACACGCGTTCACAAACGGCCAGCGAGACGAC-GTCGTCGATCGGCGAAGCTAG-GGTGGGTGC-GCTGCGCGCGTGGCGCCGCCGCGAGAGACGATCAGGCCGGGGGAGCAATGTACCAGGCGATCCCGTACAGCAGCACCCGGCCGTGGCTCAGGCCGGAGCCGGCGGCG-AGCGTGGTCGACGTCGTGAAGGTGGAGACGACGACGGCCGTCGCGGGTCGGGGCGGTGAGGCGGAGGTCGTGGGGGAGGAGGAGGCGGCGGAGGTGCGGAGGGCGGTGGCGGAGAGCCCGGTGCTGGTGGTGGGGAGGCGCGGGTGCTGCCTCATCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCCGTGCACGAGGTCGCCGGCGAGGCCGCGCTCAAGGGGGTT-GTGCCGGCCGGTGGGGAGGCCGCGGCGC-TCCCCGCCGTG-TTCGTCGGGGGGAAGCTCCTCGGCGGGCTCGACCGCCTCATGGCCGTCCACATC-TCCGGCGAGCTCG-TGCCCATCCTC-AAGAAGGCCGG-TGCCC-TCTGGCTTTAAATCACCATCATCTTCCTTCTCTCCTTCCAA-TTTTTTTCTTCC-TTTCTTCAC-AACATCGTGCC-ATCGTGGTTCAATCCTGGCCGTTGGATTCGGTTTTACATCGCGGCGGATTTCCTCTAGGATATTTTTCCTCCTCCTTTTCCGTAGGGTGTGCTAAGCTTTGAGAAAAAGAACCAGAGAGAGCTAAAGCTAATGTTGCTAGTTAATAGTAGTAATTCATTTAGCAAAATATATCTTCGTGCGTGCGTACGTGATGATGAGTATTTTACTCCCCACCATGTGAATACGGAGCGAGAGAGGAAGAGGGACAGTGACATTTGCCACATCTGTACAGTTTTGCATTTCTGAATTAATTAATGAGAATGAGACGTTCATTTTGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK105335             [AGACGTACTCCCTCCTTCCATTGTTACACGCGTTCACAAACGGCCAGCGAGACGAC GTCGTCGATCGGCGAAGCTAG GGTGGGTGC GCTGCGCGCGTGGCGCCGCCGCGAGAGACGATCAGGCCGGGGGAGCAATGTACCAGGCGATCCCGTACAGCAGCACCCGGCCGTGGCTCAGGCCGGAGCCGGCGGCG AGCGTGGTCGACGTCGTGAAGGTGGAGACGACGACGGCCGTCGCGGGTCGGGGCGGTGAGGCGGAGGTCGTGGGGGAGGAGGAGGCGGCGGAGGTGCGGAGGGCGGTGGCGGAGAGCCCGGTGCTGGTGGTGGGGAGGCGCGGGTGCTGCCTCATCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCCGTGCACGAGGTCGCCGGCGAGGCCGCGCTCAAGGGGGTT GTGCCGGCCGGTGGGGAGGCCGCGGCGC TCCCCGCCGTG TTCGTCGGGGGGAAGCTCCTCGGCGGGCTCGACCGCCTCATGGCCGTCCACATC TCCGGCGAGCTCG TGCCCATCCTC AAGAAGGCCGG TGCCC TCTGGCTTTAAATCACCATCATCTTCCTTCTCTCCTTCCAA  TTTTTTCTTCC TTTCTTCAC AACATCGTGCC ATCGTGGTTCAATCCTGGCCGTTGGATTCGGTTTTACATCGCGGCGGATTTCCTCTAGGATATTTTTCCTCCTCCTTTTCCGTAGGGTGTGCTAAGCTTTGAGAAAAAGAACCAGAGAGAGCTAAAGCTAATGTTGCTAGTTAATAGTAGTAATTCATTTAGCAAAATATATCTTCGTGCGTGCGTACGTGATGATGAGTATTTTACTCCCCACCATGTGAATACGGAGCGAGAGAGGAAGAGGGACAGTGACATTTGCCACATCTGTACAGTTTTGCATTTCTGAATTAATTAATGAGAATGAGACGTTCATTTTGC                                                                 ]
[+] EMBL AU162644             [          CCTCCTTCCATTGTTACACGCGTTCACAAACGGCCAGCGAGACGAC GTCGTCGATCGGCGAA CTAG GGTGGGTGC GCTGCGC CGTGGCGCCGCCGCGAGAGACGATCAGGCCGGGGGAGCAATGTACCAGGCGATCCCGTACAGCAGCACCCGGCCGTGGCTCAGGCCGGAGCCGGCGGCGAAGCGTGGTCGACGTCGTGAAGGTGGAGACGACGACGGCCGTCGCGGGTCGGGGCGGTGAGGCGGAGGTCGTGGGGGAGGAGGAGGCGGCGGAGGTGCGGAGGGCGGTGGCGGAGAGCCCGGTGCTGGTGGTGGGGAGGCGCGGGTGCTGCCTCATCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCCGTTCACGAGGTCGCCGGCGAGGCCGCGCTCAAGGGGGTTNTTNCCGGCCGGTGGGGAAGCCGCGGCGCTTCCCCGCCGTGTTTCGTCGGGGGGAAGCTCCTCNGCGGGCTCGACCGCCTCATGGCCGTCCACATCTTCCGGCNAGCTCGTTGNCCATCCTCAAANAAAGCCGGTTNCCCTTCTGGCTTTAAATCACCATCATCTTCTTTCTCTCCTTTCAATTTTTTTTCTTCCTTTTCTTTACAAAAATCGTGCCAATCGTng                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU222733             [                TCCATTGTTACACGCGTTCACAAACGGCCAGCGAGACGAC GTCGTCGATCGGCGAAGCTAG GGTGGGTGC GCTGCGCGCGTGGCGCCGCCGCGAGAGACGATCAGGCCGGGGGAGCAATGTACCAGGCGATCCCGTACAGCAGCACCCGGCCGTGGCTCAGGCCGGAGCCGGCGGCG AGCGTGGTCGACGTCGTGAAGGTGGAGACGACGACGGCCGTCGCGGGTCGGGGCGGTGAGGCGGAGGTCGTGGGGGAGGAGGAGGCGGCGGAGGTGCGGAGGGCGGTGGCGGAGAGCCCGGTGCTGGTGGTGGGGAGGCGCGGGTGCTGCCTCATCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCCGTGCACGAGGTCGCCGGCGAGGCCGCGCTCAAGGGGGTT GTGCCGGCCGGTGGGGAGGCCGCGGCGC TCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU173360             [                TCCATTGTTACACGCGTTCACAAACGGCCAGCGAGACGAC GTCGTCGATCGGCGAAGCTAG GGTGGGTGC GCTGCGCGCGTGGCGCCGCCGCGAGAGACGATCAGGCCGGGGGAGCAATGTACCAGGCGATCCCGTACAGCAGCACCCGGCCGTGGCTCAGGCCGGAGCCGGCGGCG AGCGTGGTCGACGTCGTGAAGGTGGAGACGACGACGGCCGTCGCGGGTCGGGGCGGTGAGGCGGAGGTCGTGGGGGAGGAGGAGGCGGCGGAGGTGCGGAGGGCGGTGGCGGAGAGCCCGGTGCTGGTGGTGGGGAGGCGCGGGTGCTGCCTCATCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCCGTGCACGAGGTCGCCGGCGAGGCCGCGCTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU184498             [                TCCATTGTTACACGCGTTCACAAACGGCCAGCGAGACGACTGTCGTCGATCGGCGAAGCTAG GGTGGGTGCAGCTGCGCGCGTGGCGCCGCCGCGAGAGACGATCAGGCCGGGGGAGCAATGTACCAGGCGATCCCGTACAGCAGCACCCGGCCGTGGCTCAGGCCGGAGCCGGCGGCG AGCGTGGTCGACGTCGTGAAGGTGGAGACGACGACGGCCGTCGCGGGTCGGGGCGGTGAGGCGGAGGTCGTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU162735             [                        TACACGCGTTCACAAACGGCCAGCGAGACGAC GTCGTCGATCGGCGAA CTAGNGGTGGGTGC GCTGCGC CGTGGCGCCGCCGCGAGAGACGATCAGGCCGGGGGAGCAATGTACCAGGCGATCCCGTACAGCAGCACCCGGCCGTGGCTCAGGCCGGAGCCGGCGGCG AGCGTGGTCGACGTCGTGAAGGTGGAGACGACGACGGCCGTCGCGGGTCGGGGCGGTGAGGCGGAGGTCGTGGGGGAGGAGGAGGCGGCGGAGGTGCGGAGGGCGGTGGCGGAGAGCCCGGTGCTGGTGGTGGGGAGGCGCGGGTGCTGCCTCATCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCCGTGCACGAGGTCGCCGGCGAGGCCGCGCTCAAGGGGGTT GTGCCGGCCGGTGGGGAGGCCGCGGCGC TCCCCGCCGTG TTCGTCGGGGGGAAGCTCCTCGGCGGGCTCGACCGCCTCATGGCCGTCCACATC TCCGGCGAGCTCG TGCCCATCCTC AAGAAGGCCGG TGCCC TCTGGCTTTAAATCACCATCATCTTCCTTCTCTCCTTCCAA TTTTTTTCTTCC TTTCTTCAC AACATCGTGCC ATCGTGGTTCAATCCTGGCCGTTGGATTCGGTTTTACATCGCGGCGGATTT CTCTAGGATATTTTTCCTCCTCCTTTTC                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU056017             [                                                                                                                                                                                                                                                                                                                                                                                                     AACCCGGCCGTGCACGAGGTCGCCGGCGAGGCCGCGCTCAAGGGGGTT NTNCCGGCCGGTGGGGAGGCCGCGGCGC TCCCCGCCGTG TTCGTCGGGGGGAAGCTCCTCGGCGGGCTCGACCGCCTCATGGCCGTCCACATC TCCGGCGAGCTCG TGCCCATCCTC AAGAAGGCCGG TGCCC TCTGGCTTTAAATCNCCATCATCTTCCTTCTCTCCTTCCAA TTTTTTTCTNCC TTTCTTCAC AACATCGTGCC ATCGTGGTTCAATCCTGGCCGTTGGATTCGGTTTTACATCGCGGCGGATTTCCTCTAGGATATTTTTCCTCCTCCTTTTCCGTAGGGTGTGCTAAGCTTTGAGAAAAAGAACCAGAGAGNGCTAAAGCTAATGTTGCTAGTTAATAGTAGTAATTCATTTAGCAAAATATATCTTCGTGCGTGCGTACGTGATGATGNGTATTTTACTCCCCNCCATGTGAATACGGAGCGAGAGAGGAAGAGGGACAGTGACATTTGCCACATNTGTACAGTTTTGCATTTNTGAATTAATTAATGNGAATGAGACGTTCATTTTGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                  ]
[+] EMBL AU173361             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGCGAGCTCG TGCCCATCCTC AAGAAGGCCGG TGCCC TCTGGCTTTAAATCACCATCATCTTCCTTCTCTCCTTCCAA TTTTTTTCTTCC TTTCTTCAC AACATCGTGCC ATCGTGGTTCAATCCTGGCCGTTGGATTCGGTTTTACATCGCGGCGGATTTCCTCTAGGATATTTTTCCTCCTCCTTTTCCGTAGGGTGTGCTAAGCTTTGAGAAAAAGAACCAGAGAGAGCTAAAGCTAATGTTGCTAGTTAATAGTAGTAATTCATTTAGCAAAATATATCTTCGTGCGTGCGTACGTGATGATGAGTATTTTACTCCCCACCATGTGAATACGGAGCGAGAGAGGAAGAGGGACAGTGACATTTGCCACATCTGTACAGTTTTGCATTTCTGAATTAATTAATGAGAATGAGACGTTCATTTTGCCCCCAAAAAAA                                                      ]
[+] EMBL AU184499             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGCGAGCTCG TGCCCATCCTC AAGAAGGCCGG TGCCC TCTGGCTTTAAATCACCATCATCTTCCTTCTCTCCTTCCAA TTTTTTTCTTCC TTTCTTCAC AACATCGTGCC ATCGTGGTTCAATCCTGGCCGTTGGATTCGGTTTTACATCGCGGCGGATTTCCTCTAGGATATTTTTCCTCCTCCTTTTCCGTAGGGTGTGCTAAGCTTTGAGAAAAAGAACCAGAGAGAGCTAAAGCTAATGTTGCTAGTTAATAGTAGTAATTCATTTAGCAAAATATATCTTCGTGCGTGCGTACGTGATGATGAGTATTTTACTCCCCACCATGTGAATACGGAGCGAGAGAGGAAGAGGGACAGTGACATTTGCCACATCTGTACAGTTTTGCATTTCTGAATTAATTAATGAGAATGAGACGTTCATTTTGCCCCCAAAAAAA                                                      ]
[+] EMBL AU057087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCACATCTGTACAGTTTTGCATTTNTGAATTAATTAATGNGAATGAGACGTTCATTTTGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14037#0 AGACGTACTCCCTCCTTCCATTGTTACACGCGTTCACAAACGGCCAGCGAGACGACGTCG TCGATCGGCGAAGCTAGGGTGGGTGCGCTGCGCGCGTGGCGCCGCCGCGAGAGACGATCA GGCCGGGGGAGCAATGTACCAGGCGATCCCGTACAGCAGCACCCGGCCGTGGCTCAGGCC GGAGCCGGCGGCGAGCGTGGTCGACGTCGTGAAGGTGGAGACGACGACGGCCGTCGCGGG TCGGGGCGGTGAGGCGGAGGTCGTGGGGGAGGAGGAGGCGGCGGAGGTGCGGAGGGCGGT GGCGGAGAGCCCGGTGCTGGTGGTGGGGAGGCGCGGGTGCTGCCTCATCCACGTGGTGAA GCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCCGTGCACGAGGTCGCCGGCGAGGCCGC GCTCAAGGGGGTTGTGCCGGCCGGTGGGGAGGCCGCGGCGCTCCCCGCCGTGTTCGTCGG GGGGAAGCTCCTCGGCGGGCTCGACCGCCTCATGGCCGTCCACATCTCCGGCGAGCTCGT GCCCATCCTCAAGAAGGCCGGTGCCCTCTGGCTTTAAATCACCATCATCTTCCTTCTCTC CTTCCAATTTTTTTCTTCCTTTCTTCACAACATCGTGCCATCGTGGTTCAATCCTGGCCG TTGGATTCGGTTTTACATCGCGGCGGATTTCCTCTAGGATATTTTTCCTCCTCCTTTTCC GTAGGGTGTGCTAAGCTTTGAGAAAAAGAACCAGAGAGAGCTAAAGCTAATGTTGCTAGT TAATAGTAGTAATTCATTTAGCAAAATATATCTTCGTGCGTGCGTACGTGATGATGAGTA TTTTACTCCCCACCATGTGAATACGGAGCGAGAGAGGAAGAGGGACAGTGACATTTGCCA CATCTGTACAGTTTTGCATTTCTGAATTAATTAATGAGAATGAGACGTTCATTTTGCCCC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AA



consensusID : consensus_14037#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 428
fasta sequence
                              [GCGGCGGCGTCGCGCTGCCGGCGGTGTTCGTCGGCGGGAGGCTCCTCGGCGGGCTCGACCGGCTCATGGCCGTGCACATCTCCGGCGAGCTCGTGCCCATTCTGAAGGAGGCCGGTGCACTCTGGCTCTGAATTAACAACGCAGTAGCGATCAAGCTGTTTTCCTTTTTTTTTTCTTTTTCTCTCCTATTAGGTTCAAATCATCTGATGCTTTTAGCTTCTTTTTTTTTTCATGGCA-TTAATAATGGTGTTGTAATTAGATAGGACGAAAAACTTGAATTCTTTTAGGATTTTAATAAGGATGATTAGGAGAAGTGTGTGTCCGTTAACGCTACTGTACTTAATTACCTTGTAACTAGTGCCTATACCTATTTTCGACCATGTAAATACGAATGGGAGAAATGAAGAGAAATATTTGCGGTAAAAAAA]

[+] EMBL AU172780             [GCGGCGGCGTCGCGCTGCCGGCGGTGTTCGTCGGCGGGAGGCTCCTCGGCGGGCTCGACCGGCTCATGGCCGTGCACATCTCCGGCGAGCTCGTGCCCATTCTGAAGGAGGCCGGTGCACTCTGGCTCTGAATTAACAACGCAGTAGCGATCAAGCTGTTTTCCTTTTTTTTTTCTTTTTCTCTCCTATTAGGTTCAAATCATCTGATGCTTTTAGCTTCTTTTTTTTTTCATGGCA TTAATAATGGTGTTGTAATTAGATAGGACGAAAAACTTGAATTCTTTTAGGATTTTAATAAGGATGATTAGGAGAAGTGTGTGTCCGTTAACGCTACTGTACTTAATTACCTTGTAACTAGTACCTATACCTATTTTCGACCATGTAAATACGAATGGGAGAAATGAAGAGAAATATTTGCGGTAAAAA  ]
[+] EMBL BI806407             [                                                                                                                                                                                                 TTCAAATCATCTGATGCTTTTAGCTTCTTTNTTTGTTCAT GCATTTAATAATGGTGTTGTAATTAGATAGGACGAAAAACTTGAATTCTTTTAGGATTTTAATAAGGATGATTAGGAGAAGTGTGTGTCCGTTGACGCTACTGTACTTAATTACCTTGTAACTAGTGCCTATACCTATTTTCGACCATGTAAATACGAATGGGAGAAATGAAGAGAAATATTTGCGGTAAAAAAA]
[+] EMBL AU089665             [                                                                                                                                                                                                                                TTTTTTCATGGCA TTAATAATGGTGTTGTAATTAGATAGGACGAAAAACTTGAATTCTTTTAGGATTTTAATAAGGATGATTAGGAGAAGTGTGTGTCCGTCAACGCTACTGTACTTAATTACCTTGTAACTAGTGCCTATACCTATTTTCGACCATGTAAATACGAATGGGAGAAATGAAGAGAAATATTTGCG         ]


>consensus_14037#1 GCGGCGGCGTCGCGCTGCCGGCGGTGTTCGTCGGCGGGAGGCTCCTCGGCGGGCTCGACC GGCTCATGGCCGTGCACATCTCCGGCGAGCTCGTGCCCATTCTGAAGGAGGCCGGTGCAC TCTGGCTCTGAATTAACAACGCAGTAGCGATCAAGCTGTTTTCCTTTTTTTTTTCTTTTT CTCTCCTATTAGGTTCAAATCATCTGATGCTTTTAGCTTCTTTTTTTTTTCATGGCATTA ATAATGGTGTTGTAATTAGATAGGACGAAAAACTTGAATTCTTTTAGGATTTTAATAAGG ATGATTAGGAGAAGTGTGTGTCCGTTAACGCTACTGTACTTAATTACCTTGTAACTAGTG CCTATACCTATTTTCGACCATGTAAATACGAATGGGAGAAATGAAGAGAAATATTTGCGG TAAAAAAA



consensusID : consensus_14037#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence
                              [TGCATTTCGCACGCAGAGAAGAGAAAAAAAAAGGGAAAAAGAAAATGTACCAGGCGAGCTCGTGCCCATTCTGAAGGAGGCCGGTGCACTCTGGCTCTGAATCAACAACGCAGTAGCGATCAAGCTGTTTTCCTTTTTTTTTTTCTTTTTCTCTCCTATTAGGTTCAAATCATCTGATGCTTTTAGCTTCTTTTTTTTTTCATGGCATTAATAATGGTGTTGTAATTAGATAGGACGAAAAACTTGAATTCTTTTAGGATTTTAATAAGGATGATTAGGAGAAGTGTGTGTCCGTTAACGCTACTGTACTTAATTACCTTGTAACTAGTACCTATACCTATTTTCGACCATGTAAATACGAATGGGAGAAATGAAGAGAAA]

[+] EMBL AK062897             [TGCATTTCGCACGCAGAGAAGAGAAAAAAAAAGGGAAAAAGAAAATGTACCAGGCGAGCTCGTGCCCATTCTGAAGGAGGCCGGTGCACTCTGGCTCTGAATCAACAACGCAGTAGCGATCAAGCTGTTTTCCTTTTTTTTTTTCTTTTTCTCTCCTATTAGGTTCAAATCATCTGATGCTTTTAGCTTCTTTTTTTTTTCATGGCATTAATAATGGTGTTGTAATTAGATAGGACGAAAAACTTGAATTCTTTTAGGATTTTAATAAGGATGATTAGGAGAAGTGTGTGTCCGTTAACGCTACTGTACTTAATTACCTTGTAACTAGTACCTATACCTATTTTCGACCATGTAAATACGAATGGGAGAAATGAAGAGAAA]


>consensus_14037#2 TGCATTTCGCACGCAGAGAAGAGAAAAAAAAAGGGAAAAAGAAAATGTACCAGGCGAGCT CGTGCCCATTCTGAAGGAGGCCGGTGCACTCTGGCTCTGAATCAACAACGCAGTAGCGAT CAAGCTGTTTTCCTTTTTTTTTTTCTTTTTCTCTCCTATTAGGTTCAAATCATCTGATGC TTTTAGCTTCTTTTTTTTTTCATGGCATTAATAATGGTGTTGTAATTAGATAGGACGAAA AACTTGAATTCTTTTAGGATTTTAATAAGGATGATTAGGAGAAGTGTGTGTCCGTTAACG CTACTGTACTTAATTACCTTGTAACTAGTACCTATACCTATTTTCGACCATGTAAATACG AATGGGAGAAATGAAGAGAAA



consensusID : consensus_14037#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence
                              [ACCAGGCGATCCCGTACAACGCGAACCGGGCTTGGCCGGCGGCGAGCNNGTGNCGANCNGNGCGGCGGCGCNCNNCCGCTGTTTGNGNCGNANGGNAATGANTGAGGTGAGGAGGGCGGTGGCGGAGTGCCCGGTGGTGGTGGTGGGTCGGAGCGGGTGCTGCCTGAGCCACGTCGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCGGTGCACGAGGTCGCCGGCGAGGCGAG]

[+] EMBL AU069968             [ACCAGGCGATCCCGTACAACGCGAACCGGGCTTGGCCGGCGGCGAGCNNGTGNCGANCNGNGCGGCGGCGCNCNNCCGCTGTTTGNGNCGNANGGNAATGANTGAGGTGAGGAGGGCGGTGGCGGAGTGCCCGGTGGTGGTGGTGGGTCGGAGCGGGTGCTGCCTGAGCCACGTCGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCGGTGCACGAGGTCGCCGGCGAGGCGAG]


>consensus_14037#3 ACCAGGCGATCCCGTACAACGCGAACCGGGCTTGGCCGGCGGCGAGCNNGTGNCGANCNG NGCGGCGGCGCNCNNCCGCTGTTTGNGNCGNANGGNAATGANTGAGGTGAGGAGGGCGGT GGCGGAGTGCCCGGTGGTGGTGGTGGGTCGGAGCGGGTGCTGCCTGAGCCACGTCGTGAA GCGGCTGCTGCAGGGGCTCGGGGTCAACCCGGCGGTGCACGAGGTCGCCGGCGAGGCGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14037#0      AGACGTACTCCCTCCTTCCATTGTTACACGCGTTCACAAACGGCCAGCGAGACGACGTCG 60
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------GCGGCGGCGTCGCGCTGCCGGCGGTGTTCGTCGGCGGGAGGCTCCTCGGCGGGC 54
consensus_14037#2      ---------------------------TGCATTTCGCACGCAGAGAA------GAGAAAA 27
                                                                                   

consensus_14037#0      TCGATCGGCGAAGCTAGGGTGGGTGCGCTGCGCGCGTGGCGCCGCCGCGAGAGACGATCA 120
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      TCGACCGGCTCATGGCCGTGCACATCTCCGGCGAGCTCGTGCCCATTCTGAAGGAGGCCG 114
consensus_14037#2      AAAAAGGGAAAAAGAAAATGTAC----CAGGCGAGCTCGTGCCCATTCTGAAGGAGGCCG 83
                                                                                   

consensus_14037#0      GGCCGGGGGAGCAATGTACCAGGCGATCCCGTACAGCAGCACCCGGCCGTGGCTCAGGCC 180
consensus_14037#3      -----------------ACCAGGCGATCCCGTACAACGCGAACCGGGCTTGGC------- 36
consensus_14037#1      GTGCACTCTGGCTCTGAATTAA-CAACGCAGTAGCGATCAAGCTGTTTTCCTTTTTTTTT 173
consensus_14037#2      GTGCACTCTGGCTCTGAATCAA-CAACGCAGTAGCGATCAAGCTGTTTTCCTTTTTTTTT 142
                                        *  *  * *  * ***       * * *               

consensus_14037#0      GGAGCCGGCGGCGAGCGTGGTCGACGTCGTGAAGGTGGAGACGACGACG-GCCGTCGCGG 239
consensus_14037#3      -----CGGCGGCGAGC----------NNGTGNCGANCNGNGCGGCGGCGCNCNNCCGCTG 81
consensus_14037#1      T----CTTTTTCTCTCCTATTAGGT-TCAAATCATCTGATGCTTTTAGCTTCTTTTTTTT 228
consensus_14037#2      TT---CTTTTTCTCTCCTATTAGGT-TCAAATCATCTGATGCTTTTAGCTTCTTTTTTTT 198
                            *     *   *                         *         *        

consensus_14037#0      GTCGGGGCGGTGAGGCGGAGGTCGTGGGGGAGGAGGAGGCGGCGGAGGTGCGGAGGGCGG 299
consensus_14037#3      TTTGNGNCGN----------------------ANGGNAATGANTGAGGTGAGGAGGGCGG 119
consensus_14037#1      TTCATGGCATTAA-----------TAATGGTGTTGTAATTAGATAGGACGAAAAACTTGA 277
consensus_14037#2      TTCATGGCATTAA-----------TAATGGTGTTGTAATTAGATAGGACGAAAAACTTGA 247
                        *   * *                          *           *  *   *    * 

consensus_14037#0      TGGCG---GAGAGCCCGGTGCTGGTGGTGGGGAGGCGCGGGTGCTGCCTCA-TCCAC-GT 354
consensus_14037#3      TGGCG---GAGTGCCCGGTGGTGGTGGTGGGTCGGAGCGGGTGCTGCCTGA-GCCAC-GT 174
consensus_14037#1      ATTCTTTTAGGATTTTAATAAGGATGATTAGGAGAAGTGTGTGTCCGTTAACGCTACTGT 337
consensus_14037#2      ATTCTTTTAGGATTTTAATAAGGATGATTAGGAGAAGTGTGTGTCCGTTAACGCTACTGT 307
                          *      *       *   * ** *  *  *  * * ***     * *  * ** **

consensus_14037#0      GGTGAAGCGGCT-GCTGCAGGGGCTCGGGGTCAACC-CGGCCGTGCACGAGGTCGCCGGC 412
consensus_14037#3      CGTGAAGCGGCT-GCTGCAGGGGCTCGGGGTCAACC-CGGCGGTGCACGAGGTCGCCGGC 232
consensus_14037#1      ACTTAATTACCTTGTAACTAGTGCCTATACCTATTTTCGACCATGTAAATACGAATGGGA 397
consensus_14037#2      ACTTAATTACCTTGTAACTAGTACCTATACCTATTTTCGACCATGTAAATACGAATGGGA 367
                         * **    ** *   *  *  *        *    ** *  ** *          ** 

consensus_14037#0      GAGGCCGCGCTCAAGGGGGTTGTGCCGGCCGGTGGGGAGGCCGCGGCGCTCCCCGCCGTG 472
consensus_14037#3      GAGGCGAG---------------------------------------------------- 240
consensus_14037#1      GAAATGAAGAGAAATATTTGCGGTAAAAAAA----------------------------- 428
consensus_14037#2      GAAATGAAGAGAAA---------------------------------------------- 381
                       **                                                          

consensus_14037#0      TTCGTCGGGGGGAAGCTCCTCGGCGGGCTCGACCGCCTCATGGCCGTCCACATCTCCGGC 532
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------------------------------------------------------------
consensus_14037#2      ------------------------------------------------------------
                                                                                   

consensus_14037#0      GAGCTCGTGCCCATCCTCAAGAAGGCCGGTGCCCTCTGGCTTTAAATCACCATCATCTTC 592
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------------------------------------------------------------
consensus_14037#2      ------------------------------------------------------------
                                                                                   

consensus_14037#0      CTTCTCTCCTTCCAATTTTTTTCTTCCTTTCTTCACAACATCGTGCCATCGTGGTTCAAT 652
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------------------------------------------------------------
consensus_14037#2      ------------------------------------------------------------
                                                                                   

consensus_14037#0      CCTGGCCGTTGGATTCGGTTTTACATCGCGGCGGATTTCCTCTAGGATATTTTTCCTCCT 712
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------------------------------------------------------------
consensus_14037#2      ------------------------------------------------------------
                                                                                   

consensus_14037#0      CCTTTTCCGTAGGGTGTGCTAAGCTTTGAGAAAAAGAACCAGAGAGAGCTAAAGCTAATG 772
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------------------------------------------------------------
consensus_14037#2      ------------------------------------------------------------
                                                                                   

consensus_14037#0      TTGCTAGTTAATAGTAGTAATTCATTTAGCAAAATATATCTTCGTGCGTGCGTACGTGAT 832
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------------------------------------------------------------
consensus_14037#2      ------------------------------------------------------------
                                                                                   

consensus_14037#0      GATGAGTATTTTACTCCCCACCATGTGAATACGGAGCGAGAGAGGAAGAGGGACAGTGAC 892
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------------------------------------------------------------
consensus_14037#2      ------------------------------------------------------------
                                                                                   

consensus_14037#0      ATTTGCCACATCTGTACAGTTTTGCATTTCTGAATTAATTAATGAGAATGAGACGTTCAT 952
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------------------------------------------------------------
consensus_14037#2      ------------------------------------------------------------
                                                                                   

consensus_14037#0      TTTGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1012
consensus_14037#3      ------------------------------------------------------------
consensus_14037#1      ------------------------------------------------------------
consensus_14037#2      ------------------------------------------------------------
                                                                                   

consensus_14037#0      AAAAAAAAAA 1022
consensus_14037#3      ----------
consensus_14037#1      ----------
consensus_14037#2      ----------
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)