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Oryza sativa
cluster # 14044 cluster # 14044       Sequences # 15       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14044#0 length = 1057 sequences # 2  
consensus_14044#1 length = 728 sequences # 12  
consensus_14044#2 length = 299 sequences # 1  

consensusID : consensus_14044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1057
fasta sequence
                              [TGCAAAGGCACTTCACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGTATTGCATCAACCAGTGCTGTTATATTTAGACTATAGTTTTGTTTTCTAAATCTGCAGGTTCTGAGGCAGAATACCTCTTAACTAGATAACATGCCTAAGATCACTTGTTTTTAGCAGCTAAATGAACTTGTAAGTTTGTTTATCCTTGAGAGTTCAGACAACTAATTAGATTTTTGACTTGTTTTCTGCTCTAAATCTAGGTTCAGCAGAAAGTGTGACATATGCCTAAGATCACTAGTTCTTTTAGCAACTAAATGAGCTTGTATTTTCATTTGAGGCTTTAAACTGTTAAGAGACATTGTGCAAACACATTGGATCTGTAATCTCTTTTTTTTCAGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCATGGCGGCGATCGACAAGGTCGTCGTCGTCGACTTCCCCGTCGTCG-CCTCCAAGCCTGCACCACCGGCGGCAC---CGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTGCTGTGACTTAAAAACCCACGCGTNCCGNC]

[+] EMBL AK061232             [TGCAAAGGCACTTCACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGTATTGCATCAACCAGTGCTGTTATATTTAGACTATAGTTTTGTTTTCTAAATCTGCAGGTTCTGAGGCAGAATACCTCTTAACTAGATAACATGCCTAAGATCACTTGTTTTTAGCAGCTAAATGAACTTGTAAGTTTGTTTATCCTTGAGAGTTCAGACAACTAATTAGATTTTTGACTTGTTTTCTGCTCTAAATCTAGGTTCAGCAGAAAGTGTGACATATGCCTAAGATCACTAGTTCTTTTAGCAACTAAATGAGCTTGTATTTTCATTTGAGGCTTTAAACTGTTAAGAGACATTGTGCAAACACATTGGATCTGTAATCTCTTTTTTTTCAGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCATGGCGGCGATCGACAAGGTCGTCGTCGTCGACTTCCCCGTCGTCG CCTCCAAGCCTGCACCACCGGCGGCAC   CGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTT                              ]
[-] EMBL AU164932             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCAGGAGTTCGCCGGCACGTTCATGGCGGCGATCGACAAGGTCGTCGTCGTCGACTTCCCCGTCGTCGCCCTCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGNTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTGCTGTGACTTAAAAACCCACGCGTNCCGNC]


>consensus_14044#0 TGCAAAGGCACTTCACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGG TTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAA GAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATG GTGAAATCCTTCGAGTGGTATTGCATCAACCAGTGCTGTTATATTTAGACTATAGTTTTG TTTTCTAAATCTGCAGGTTCTGAGGCAGAATACCTCTTAACTAGATAACATGCCTAAGAT CACTTGTTTTTAGCAGCTAAATGAACTTGTAAGTTTGTTTATCCTTGAGAGTTCAGACAA CTAATTAGATTTTTGACTTGTTTTCTGCTCTAAATCTAGGTTCAGCAGAAAGTGTGACAT ATGCCTAAGATCACTAGTTCTTTTAGCAACTAAATGAGCTTGTATTTTCATTTGAGGCTT TAAACTGTTAAGAGACATTGTGCAAACACATTGGATCTGTAATCTCTTTTTTTTCAGGGG GAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGAC CTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGC CGGCACGTTCATGGCGGCGATCGACAAGGTCGTCGTCGTCGACTTCCCCGTCGTCGCCTC CAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGTGATGATGACGACATCAACTGTCCAT CAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTAT CCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTG CATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTC TATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCT TTTGGTTGCTGTGACTTAAAAACCCACGCGTNCCGNC



consensusID : consensus_14044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 728
fasta sequence
                              [ATCACACTCTCCTGCAAAGGCACTTCACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCAT-GGC-GGCGA-TCGACAAGGTCG-TCGTC-GTC-GAC-TTCCCCGTCGTCGCCTCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTGCTGTGACTTAAAAAAAAAAAAAAAA]

[+] EMBL OSR19381A            [ATCACACTCTCCTGCAAAGGCACTTCACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCAT GGN GGCGA TCGACAAGGTCG TCGTC GTC GACTTTCCCCGTCGTCGNCTCCAAGCCTGCACC                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK058243             [         TCCTGCAAAGGCACTTCACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCAT GGC GGCGA TCGACAAGGTCG TCGTC GTC GAC TTCCCCGTCGTCGCCTCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTT                          ]
[+] EMBL AK099186             [           CTGCAAAGGCACTTCACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCAT GGC GGCGA TCGACAAGGTCG TCGTC GTC GAC TTCCCCGTCGTCGCCTCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGA                                    ]
[+] EMBL AU095143             [                          ACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCAT GGC GGCGA TCGACAAGGTCG TCGTC GTC GAC TTCCCCGTCGTCGCCTCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAA TGTCCATCAAGCATCCATCCGCCAT                                                                                                                                                                                                                                                               ]
[+] EMBL AU030926             [                                     TAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCATNGGCGGGCGA TCGACAAGG                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU030791             [                                                     TTTTCTTTGCACCTTTTGNTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCAT GGC GGCGA TCGACAAGGTCG TCGTC GTC GAC TTCCCCGTCGTCGCCTCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTGCTGTGACTTAAAAAAAAAA      ]
[-] EMBL BU673291             [                                                      gTTCTTTGCACCTTTTGG TTTTTGGAGCTTCACCAATGGGGGAGATCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCAT GGC GGCGA TCGACAAGGTCG TCGTC GTC GAC TTCCCCGTCGTCGCCGCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATAGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTG                         ]
[+] EMBL AU030927             [                                                                                                                    GGTGNAGTTCAAGGAAGAGGTCTTGNTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACTTGGTGAAATCTTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGNGTTCGCCGGCACGTTCAT GGC GGCGATTCGACAAGGTCG TCGTC GTC GAC TTCCCCGTCGTCGCCTCCAAGCCTGCACCACCGGCGGCNCCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTGCTGTGNNTTAAAAAAAAAAAA    ]
[+] EMBL CA999070             [                                                                                                                                                              AGGTATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCAT GGC GGCGA TCGACAAGGTCG TCGTC GTC GAC TTCCCCGTCGTCGCCTCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTGCTGTGACTTAAAAAAAA        ]
[-] EMBL CB967416             [                                                                                                                                                                            TTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCAT GGC GGCGA TCGACAAGGTCG TCGTC GTC GAC TTCCCCGTCGTCGCCGCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATAGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTG                         ]
[-] EMBL BI305575             [                                                                                                                                                                                                                                                                                                                                               CACGTTCAT GGC GGCGA TCGACAAGGTTG TTGTC GTC GAC TTCCCCGTGGTCGCCGCCAAGCCTGCCCCCCCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATAGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATTTACACACGCAGATAGCTGTGATAGATGTCCCTTAGGTTCCATTATTGCATGTTTTTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTG                         ]
[+] EMBL AU031818             [                                                                                                                                                                                                                                                                                                                                                                         AGGTCGATCGTCTGTCGGACTTTCCCCGTCGTCGCCTCCAAGCCTGCACCACCGGCGGNACCGGCGGCGGCGGCGTGATGATGACGNCATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCACATAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTGCTGTGACTTAAAAAAAAAAAAAAAA]


>consensus_14044#1 ATCACACTCTCCTGCAAAGGCACTTCACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTT TGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTG AAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCG GAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTGAACCAGGAGATGCTG ACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACC TACATGAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCATGGCGGCGATCGACAAG GTCGTCGTCGTCGACTTCCCCGTCGTCGCCTCCAAGCCTGCACCACCGGCGGCACCGGCG GCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCATCCGCCATGGCATCA ACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGA TAGCTGTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGA GCTGGTGTAGCTTAGCTAAAGCTGTAATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCT TGTTCGGTTATTCTTGGAATAAATTTCGGTGATCTTTTGGTTGCTGTGACTTAAAAAAAA AAAAAAAA



consensusID : consensus_14044#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGNGAAATCCTTCGAGTGGGGGAAGGATGTNTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGNA]

[-] EMBL AU031542             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGNGAAATCCTTCGAGTGGGGGAAGGATGTNTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGNA]


>consensus_14044#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTTCAGCAATGGGGGA GGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCCTGCA AGGCATGACCAAGCTTGTCTCGGAGATGGACATGGNGAAATCCTTCGAGTGGGGGAAGGA TGTNTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGC GAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCGCCGGNA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14044#1      ------------------------------------------------------------
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      TGCAAAGGCACTTCACCTGGAGGTGTAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGG 60
                                                                                   

consensus_14044#1      ------------------------------------------------------------
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      TTTTTTGGAGCTTCAGCAATGGGGGAGGTCAAGCATCTTTGCCTGGTGAAGTTCAAGGAA 120
                                                                                   

consensus_14044#1      ------------------------------------------------------------
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      GAGGTCTTGGTGGATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATG 180
                                                                                   

consensus_14044#1      ------------------------------------------------------------
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      GTGAAATCCTTCGAGTGGTATTGCATCAACCAGTGCTGTTATATTTAGACTATAGTTTTG 240
                                                                                   

consensus_14044#1      ------------------------------------------------------------
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      TTTTCTAAATCTGCAGGTTCTGAGGCAGAATACCTCTTAACTAGATAACATGCCTAAGAT 300
                                                                                   

consensus_14044#1      -----------------------ATCACACTCTCCTGCAAAGGCACTTCACCTGGAGGTG 37
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      CACTTGTTTTTAGCAGCTAAATGAACTTGTAAGTTTGTTTATCCTTGAGAGTTCAGACAA 360
                                                                                   

consensus_14044#1      TAGTGTGAGGAGAGCTTTTTCTTTGCACCTTTTGGTTTTTTGGAGCTTCAGCAATGGGGG 97
consensus_14044#2      -TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTTCAGCAATGGGGG 59
consensus_14044#0      CTAATTAGATTTTTGACTTGTTTTCTGCTCTAAATCTAGGTTCAGCAGAAAGTGTGACAT 420
                            *           **  ***      *     *   *  ***   *    **    

consensus_14044#1      AGGTCAAGCATCTTTGCCTGGT---GAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCC 154
consensus_14044#2      AGGTCAAGCATCTTTGCCTGGT---GAAGTTCAAGGAAGAGGTCTTGGTGGATGACATCC 116
consensus_14044#0      ATGCCTAAGATCACTAGTTCTTTTAGCAACTAAATGAGCTTGTATTTTCATTTGAGGCTT 480
                       * * * *  ***  *   *  *   * *  * ** **    ** **      ***     

consensus_14044#1      TGCAAGGCATGACCAAGCTTGTCTCGG-AGATGGACATGGTGAAATCCTTCGAGT--GGG 211
consensus_14044#2      TGCAAGGCATGACCAAGCTTGTCTCGG-AGATGGACATGGNGAAATCCTTCGAGT--GGG 173
consensus_14044#0      TAAACTGT-TAAGAGACATTGTGCAAACACATTGGATCTGTAATCTCTTTTTTTTCAGGG 539
                       *  *  *  * *   *  ****      * ** *     *  *  ** **    *  ***

consensus_14044#1      GGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGA 271
consensus_14044#2      GGAAGGATGTNTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGA 233
consensus_14044#0      GGAAGGATGTGTTGAACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGA 599
                       ********** *************************************************

consensus_14044#1      CCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCG 331
consensus_14044#2      CCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCG 293
consensus_14044#0      CCTTCGCGAGCTCTGAAGATCTGACGACCTACATGAGCCACGAGAGACACCAGGAGTTCG 659
                       ************************************************************

consensus_14044#1      CCGGCACGTTCATGGCGGCGATCGACAAGGTCGTCGTCGTCGACTTCCCCGTCGTCGCCT 391
consensus_14044#2      CCGGNA------------------------------------------------------ 299
consensus_14044#0      CCGGCACGTTCATGGCGGCGATCGACAAGGTCGTCGTCGTCGACTTCCCCGTCGTCGCCT 719
                       **** *                                                      

consensus_14044#1      CCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGT 451
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      CCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCG---TGATGATGACGACATCAACTGT 776
                                                                                   

consensus_14044#1      CCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAG 511
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      CCATCAAGCATCCATCCGCCATGGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAG 836
                                                                                   

consensus_14044#1      GTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATT 571
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      GTATCCATCCATCCATCTACACACGCAGATAGCTGTGATAGATGTACCTTAGGTTCCATT 896
                                                                                   

consensus_14044#1      ATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCA 631
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      ATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGTAATGCA 956
                                                                                   

consensus_14044#1      GCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTG 691
consensus_14044#2      ------------------------------------------------------------
consensus_14044#0      GCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAATAAATTTCGGTG 1016
                                                                                   

consensus_14044#1      ATCTTTTGGTTGCTGTGACTTAAAAAAAAAAAAAAAA---- 728
consensus_14044#2      -----------------------------------------
consensus_14044#0      ATCTTTTGGTTGCTGTGACTTAAAAACCCACGCGTNCCGNC 1057
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)