These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2936 fasta sequence [CCCCCCTATTTTTTCTTCCCATCTCTCCCCACCTCCTCTCCTCCTCCTCCTTCCAGCCGAAGCCACGCGCGGACGGGAGAGAGGGGAAGGACGCGGCCGCGGCTCGCCTCTCCCCCCCCCCCTCGCTTGCCGCCGATCGGCGATCGGGGCGGCGGGACGATCCCCGGAGGGAGCAGCCGGCGCGGAGTCCGGAAGCAGTTTTGTAGCGTTATCCAATTGGCTTCCGCTATCTGCAACAGTTTCCACCATTTGTCAATAAATTACTGACCTTGTAGTTGAGGGAAGCGGTTCTGTAACATTAGCCGATTGGCGTCCGCTATCTGCGACGGATTCCACCATTTGTCAATAAATTATTGACCTTGTAGTTGAGGATCGTCAACCTCAAGTTGTAAAACATTGATTTTTAATGGGTGATGTTTTATTACATTGAACTCATTTAAGTACCTCATAAGTTATCCAAGGAAGACAGTAAAGTTTCGATGCATCAACATAGGATCACTATGCTATCTTCCTCAGAAACATGTCACCTTGGTTCTAGTTCGAACAACCAAGCCATGGATCAGCAGAATTTACTGCCCAGCAACCCCACCGCAGATGAACAGAATTTACTTCCAAATACTCTAGAGGATGATGATTACCCACATTATTTACTTGGTAGTCATGAGGTGGAAATGCCAAATGGAAGCGTGATTGGTCAGCAAAATACAAGCTTGAACTTATGGGATTCAGCTGGATCTAGCTCGATGGGCTGTGTAGCTGATCATGATAGTCTTTTTGAGGCCAAAAGGGAACATTTTGCTCCTGCTTTGTCTATCCGAGCTCCCTTAATTATTGGAGGGAGAAGACATGAAGGCAGTAGTTCATTGCCTTCACAGAGCTTAAACTTAGACCTTAATCTTAATCAGGCTGATCAGTTTGATTCTGAGGATGTTGATATGATTCAGAGTAATGGACAACCAGGGATAAACGCTTTTCCTCTCAACAGGGGCCTTTCCATTCCTGAGCATGTTCTGCGCCATACAAATTCTTCCAGTGCTACAGGAAATCCTTCACAGGTTGCAAGCTTTTCTGATGGAATGACAGGCCAAGAAGTTAACCTGTTTGGTGGGCATCGTTCATCTTGCAAGAGAAAGAATATTGATGGGAGTCTTGCAGAGTCTTCTGCCAATGGTAGTTCACGTAATAATCAGCGAAATAATATTATACTGGAACCTTCTCCATCCAGTCATGAAAGCACTTCTGGTTTAACTGCACCTGCCCCTACAAACCATGTTTTTTCATACTCTCCTGTGGAACAGCTAAACCAGAATACCAATATGTCTGCAAATGCTATGTTGTCTGATCATTATTCACTATATGGTGATCATGAGCGTGAGAGATTTCTGAGGAATACCCGGATGAGAACAAGCCCTAATGAGTATGATCAATCATCGTCCAATCTCTTGCCTGAAGGAAGTCTCAGGTGTTCTGTTTATCAGCCTACTCAGCAACAGTCTTTGTTTATTCCAGTACAACCTAGAGCATCGAGCTCTTCAACAAGTTCTCTTAGTCGGCCTTATGTGCCT-GCTGTCACTCAATTCTCACAAAATTTGCACCGT-GCTCCATCAAGTGGCAATTTTGGTTCGAGAATAGGGATTTTTCCTAGTTCTGCTGATACAACAAACCAGTTATCTTCACAAGATCCCAACAGGAGCTCGGTGAGAGGCAATTTTCCTGAGCCCCTTCTGTTAGGTTCTTCTCTGTTTCCTTCTGACTC-GGCAGAATTGCTATCTATGCCGGGAGGCAGAAGCAACCAACAAAATTCCAGCTCCACAATTCGAACTGCTGTAAATATAGGAGCTCAACAGATTGCTGGGTTAAATGCATCCCAGCCTACTTCAAGCTCAAGGGGTTCGGTTGATATTGTTAGGAGATCCTTGCAGGCTGCTAGCGTTCCTCAGTCCAGAGGTTCAAGCATTACATCACAGCAGCAACGTGGGCATTCATCCACATCACATGAGATTCGAAGCCATCAACCTGGATCCAGCTCTCGTGCCAATCAGCAGCATTATGTCAGGGCTGTTCCTCACTCTGTAGATAGGCAAAACTCGAATTACTTGGACCTGCAGTCTTTTATGCAAAGCATTGCTGCTTCAAGAGACGGAATTAGGACAGTCTCAGAGTCTGCCAATCAACTTGTGCATCTTCGCAATGTTGTTGAACAAATTCGTCAGGGAAGAGGTGGAAGGTTTGAGGATCCTAATTTTGAACGTGCACTTTTTGCAAGGCGTGCCAGTTTAATTGACAGACATCGTGACATGCGGCTTGATGTGGATAATATGTCATATGAGGAATTGTTGGCACTTGGTGAACGCA-TTGGGTATGTAAACACTGGACTTAGTGAGGATAAA-ATTAGGACT-GGTTT-GAAGCAATGGAAATATGTGAGCATACCGA-TTGAAGAACCTCTAACTGGTGTTGAACCATG-CTGTATTTGCCAGGAAGAATATGCCGAAGGTGAGGA-CATGGGCAGACTAGA-CTGTGGGCATGACTTCCACACCGCAT-GCATCAAACAAT-GGCTGGTTAT-AAAAAAT-CTGT-GCCCTATCTGT-AAAAAGA-CAGGACT-GGGCA-CTTAATTTT-GCGTGCTTCC-GCCTGCGAGGA-AAGCGGATAAGCCTCTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAAGGCGATGGTTGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTC-AATAACATTCAATTGCAATTGGGCATTTCCTAAAAAAAGCCTGTCATTTTTTTGT-CCCCTTTGGAGGTTGCCTGTGTTCTTGCTCTGAGTTGGGAAGTTGGAAGTTGTAACCAA] [+] EMBL CB638596 [CCCCCCTATTTTTTCTTCCCATCTCTCCCCACCTCCTCTCCTCCTCCTCCTTCCAGCCGAAGCCACGCGCGGACGGGAGAGAGGGGAACGACGCGGCCGCGGCTCGCCTCTCCCCCCCCCCCTCGCTTGCCGCCGATCGTCTATCGGGGCGGCGGGACGATCCCCGGAGGGAGCAGCCGGCGCCGAGTCCGGAAGCAGTTTTGTAGCGTGATCCAATTGGCTTCCGCTATCTGCAACAGTTCCCACCATTTGTCCATAAATTACTGACCTTGTAGCTGAAGGAAGCGGTTCTGTAACATTAGCCGATTGGCGTCCGCTATCTGC ] [+] EMBL CB638134 [ TTTTTCTTCCCATTTCTCCCCACCTCCTCTCCTCCTCCTCCTTCCAGCCGAAGCCACGCGCGGACGGGAGAGAGGGGAAGGACGCGGCCGCGGCTCGCCTCTCCCCCCCCCCCTCGCTTGCCGCCGATCGGCGATCGGGGCGGCGGGACGATCCCCGGAGGGAGCAGCCGGCGCGGAGTCCGGAAGCAGTTTTGTAGCGTTATCCAATTGGCTTCCGCTATCTGCAACAGTTTCCACCATTTGTCAATAAATTACTGACCTTGTAGTTGAGGGAAGCGGTTCTGTAACATTAGCCGATTGGCGTCCGCTATCTGCGACGGATTCCACCATTTGTCAATAAATTATTGACCTTGTAGTTGAGGATCGTCAACCTCAAGTTGTAAAACATTGATTTTTAATGGGTGATGTTTTATTACATTGAACTCATTTAAGTACCTCATAAGTTATCCAAGGAAGACAGTAAAGTTTCGATGCATCAACATAGGATCACTATGCTATCTTCCTCAGAAACATGTCACCTTGGTTCTAGTTCGAACAACCAAGCCATGGATCAGCAGAATTTACTGCCCAGCAACCCCACCGCAGATGAACAGAATTTACTTC ] [+] EMBL AK064939 [ CCACCTCCTCTCCTCCTCCTCCTTCCAGCCGAAGCCACGCGCGGACGGGAGAGAGGGGAAGGACGCGGCCGCGGCTCGCCTCTCCCCCCCCCCCTCGCTTGCCGCCGATCGGCGATCGGGGCGGCGGGACGATCCCCGGAGGGAGCAGCCGGCGCGGAGTCCGGAAGCAGTTTTGTAGCGTTATCCAATTGGCTTCCGCTATCTGCAACAGTTTCCACCATTTGTCAATAAATTACTGACCTTGTAGTTGAGGGAAGCGGTTCTGTAACATTAGCCGATTGGCGTCCGCTATCTGCGACGGATTCCACCATTTGTCAATAAATTATTGACCTTGTAGTTGAGGATCGTCAACCTCAAGTTGTAAAACATTGATTTTTAATGGGTGATGTTTTATTACATTGAACTCATTTAAGTACCTCATAAGTTATCCAAGGAAGACAGTAAAGTTTCGATGCATCAACATAGGATCACTATGCTATCTTCCTCAGAAACATGTCACCTTGGTTCTAGTTCGAACAACCAAGCCATGGATCAGCAGAATTTACTGCCCAGCAACCCCACCGCAGATGAACAGAATTTACTTCCAAATACTCTAGAGGATGATGATTACCCACATTATTTACTTGGTAGTCATGAGGTGGAAATGCCAAATGGAAGCGTGATTGGTCAGCAAAATACAAGCTTGAACTTATGGGATTCAGCTGGATCTAGCTCGATGGGCTGTGTAGCTGATCATGATAGTCTTTTTGAGGCCAAAAGGGAACATTTTGCTCCTGCTTTGTCTATCCGAGCTCCCTTAATTATTGGAGGGAGAAGACATGAAGGCAGTAGTTCATTGCCTTCACAGAGCTTAAACTTAGACCTTAATCTTAATCAGGCTGATCAGTTTGATTCTGAGGATGTTGATATGATTCAGAGTAATGGACAACCAGGGATAAACGCTTTTCCTCTCAACAGGGGCCTTTCCATTCCTGAGCATGTTCTGCGCCATACAAATTCTTCCAGTGCTACAGGAAATCCTTCACAGGTTGCAAGCTTTTCTGATGGAATGACAGGCCAAGAAGTTAACCTGTTTGGTGGGCATCGTTCATCTTGCAAGAGAAAGAATATTGATGGGAGTCTTGCAGAGTCTTCTGCCAATGGTAGTTCACGTAATAATCAGCGAAATAATATTATACTGGAACCTTCTCCATCCAGTCATGAAAGCACTTCTGGTTTAACTGCACCTGCCCCTACAAACCATGTTTTTTCATACTCTCCTGTGGAACAGCTAAACCAGAATACCAATATGTCTGCAAATGCTATGTTGTCTGATCATTATTCACTATATGGTGATCATGAGCGTGAGAGATTTCTGAGGAATACCCGGATGAGAACAAGCCCTAATGAGTATGATCAATCATCGTCCAATCTCTTGCCTGAAGGAAGTCTCAGGTGTTCTGTTTATCAGCCTACTCAGCAACAGTCTTTGTTTATTCCAGTACAACCTAGAGCATCGAGCTCTTCAACAAGTTCTCTTAGTCGGCCTTATGTGCCT GCTGTCACTCAATTCTCACAAAATTTGCACCGT GCTCCATCAAGTGGCAATTTTGGTTCGAGAATAGGGATTTTTCCTAGTTCTGCTGATACAACAAACCAGTTATCTTCACAAGATCCCAACAGGAGCTCGGTGAGAGGCAATTTTCCTGAGCCCCTTCTGTTAGGTTCTTCTCTGTTTCCTTCTGACTC GGCAGAATTGCTATCTATGCCGGGAGGCAGAAGCAACCAACAAAATTCCAGCTCCACAATTCGAACTGCTGTAAATATAGGAGCTCAACAGATTGCTGGGTTAAATGCATCCCAGCCTACTTCAAGCTCAAGGGGTTCGGTTGATATTGTTAGGAGATCCTTGCAGGCTGCTAGCGTTCCTCAGTCCAGAGGTTCAAGCATTACATCACAGCAGCAACGTGGGCATTCATCCACATCACATGAGATTCGAAGCCATCAACCTGGATCCAGCTCTCGTGCCAATCAGCAGCATTATGTCAGGGCTGTTCCTCACTCTGTAGATAGGCAAAACTCGAATTACTTGGACCTGCAGTCTTTTATGCAAAGCATTGCTGCTTCAAGAGACGGAATTAGGACAGTCTCAGAGTCTGCCAATCAACTTGTGCATCTTCGCAATGTTGTTGAACAAATTCGTCAGGGAAGAGGTGGAAGGTTTGAGGATCCTAATTTTGAACGTGCACTTTTTGCAAGGCGTGCCAGTTTAATTGACAGACATCGTGACATGCGGCTTGATGTGGATAATATGTCATATGAGGAATTGTTGGCACTTGGTGAACGCA TTGGGTATGTAAACACTGGACTTAGTGAGGATAAA ATTAGGACT GGTTT GAAGCAATGGAAATATGTGAGCATACCGA TTGAAGAACCTCTAACTGGTGTTGAACCATG CTGTATTTGCCAGGAAGAATATGCCGAAGGTGAGGA CATGGGCAGACTAGA CTGTGGGCATGACTTCCACACCGCAT GCATCAAACAAT GGCTGGTTAT AAAAAAT CTGT GCCCTATCTGT AAAAAGA CAGGACT GGGCA CTTAATTTT GCGTGCTTCC GCCTGCGAGGA AAGCGGATAAGCCTCTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAAGGCGATGGTTGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTC AATAACATTCAATTGCAATTG ] [+] EMBL CF307458 [ ATCCCCGGAGGGAGCAGCCGGCGCGGAGTCCGGAAGCAGTTTTGTAGCGTTATCCAATTGGCTTCCGCTATCTGCAACAGTTTCCACCATTTGTCAATAAATTACTGACCTTGTAGTTGAGGGAAGCGGTTCTGTAACATTAGCCGATTGGCGTCCGCTATCTGCGACGGATTCCACCATTTGTCAATAAATTATTGACCTTGTAGTTGAGGATCGTCAACCTCAAGTTGTAAAACATTGATTTTTAATGGGTGATGTTTTATTACATTGAACTCATTTAAGTACCTCATAAGTTATCCAAGGAAGACAGTAAAGTTTCGATGCATCAACATAGGATCACTATGCTATCTTCCTCAGAAACATGTCACCTTGGTTCTAGTTCGAACAACCAAGCCATGGATCAGCAGAATTTA ] [+] EMBL AU056401 [ TCTTGCAGAGTCTTCTGCCAATGGTAGTTCACGTAATAATCAGCGAAATAATATTATACTGGAACCTTCTCCATCCAGTCATGAAAGCACTTCTGGTTTAACTGCACCTGCCCCTACAAACCATGTTTTTTCATACTCTCCTGTGGAACAGCTAAACCAGAATACCAATATGTCTGCAAATGCTATGTTGTCTGATCATTATTCACTATATGGTGATCATGAGCGTGAGAGATTTCTGAGGAATACCCGGATGAGAACAAGCCCTAATGAGTATGATCAATCATCGTCCAATCTCTTGCCTGAAGGAAGTCTCAGGTGTTCTGTTTATCAGCCTACTCAGCAACAGTCTTTGTTTATTCCAGTACAACCTAGAGCATCGAGCTCTTCAACAAGTTCTCTTAGTCGGCCTTATGTGCCTGGCTGTCACTCAATTCTCACAAAATTTGCACCGTGGCTCCATCAAGTGGCAATTTTGGTTCGAGAATAGGGATTTTGCCTAGTTCTGCTGATACAACAAACCAGTTATCTTCACAAGATCCCAACAGGAGCTCGGTGAGAGGCAATTTTCCTGAGCCCCGTCTGTTAGGNTCTTCTCTGTGTCCTTCTGACNCGGGCAGAATTGCNATCTATGCCGGGAGGNAGAAGCAACCANCAAAATTCCAGGTCCACAATTCGAACTGCTGGAAATATAGG GNTCAACAGATTGCTGGGTTn ] [+] EMBL OSC395 [ GCCCCTACAAACCATGTTTTTTCATACTCTCCTGTGGAACAGCTAAACCAGAATACCAATATGTCTGCAAATGCTATGTTGTCTGATCATTATTCACTATATGGTGATCATGAGCGTGAGAGATTTCTGAGGAATACCCGGATGAGAACAAGCCCTAATGAGTATGATCAATCATCGGCCAATCTCTNGCCTGAAGGAAGTCTCAGGTGTTCTGTTTATCAGCCTACTCAGCAACAGTCTTNGTTTATTCCAGTACAACCTAGAGC ] [-] EMBL CB638135 [ TGCACTTTTTGCAAGGCGTGCCAGTTTAATTGACAGACATCGTGACATGCGGCTTGATGTGGATAATATGTCATATGAGGAATTGTTGGCACTTGGTGAACGCA TTGGGTATGTAAACACTGGACTTAGTGAGGATAAA ATTAGGACT GGTTT GAAGCAATGGAAATATGTGAGCATACCGA TTGAAGAACCTCTAACTGGTGTTGAACCATG CTGTATTTGCCAGGAAGAATATGCCGAAGGTGAGGA CATGGGCAGACTAGA CTGTGGGCATGACTTCCACACCGCAT GCATCAAACAAT GGCTGGTTAT AAAAAAT CTGT GCCCTATCTGT AAAAAGA CAGGACT GGGCA CTTAATTTT GCGTGCTTCC GCCTGCGAGGA AAGCGGATAAGCCTCTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAAGGCGATGGTTGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTC AA ] [+] EMBL BM420870 [ TGGATAATATGTCATATGAGGAATTGTTGGCACTTGGTGAACGCACTTGGGTATGTAAACACTGGACTTAGTGAGGATAAA ATTAGGACT GGTTT GAAGC ATGGAAATATGTGAGCATACCGA TTGAAGAACCTCTAACTGGTGTTGAACCATG CTGTATTTGCCAGGAAGAATATGCCGAAGGTGAGGA CATGGGCAGACTAGA CTGTGGGCATGACTTCCACACCGCAT GCATCAAACCAT GGCTGGTTAT AAAAAAT CTGT GCCCTATCTGT AAAAAGA CAGGACT GGGCA CTTAATTTT GCGCGCTTCC GCCTGCGAGGA AAGCGGATAAGCCTCTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAAGGCGATGGTTGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTC AATAACATTCAATTGC ATTGGGCATTTCCTAAAAAAA ] [+] EMBL BQ907098 [ ATAAATATTAGGACTGGGTTTGGAAGCAATGGAAATATGTGAGCATACCGATTTGAAGAACCTTTAACTGGTGTTGAACCATGCCTGTATTTGCCAGGAAGAATATNCCGAAGGTGAGGACCATGGCCAGACTAGACCTGTGGGCATGACTTCCACACCGCATGGCATCAAACAATGGGCTGGTTATGAAAAAATGCTGTGGCCCTATCTGTGAAAAAGACCAGGACTGGGGCACCTTAATTTTGGCGCGCTTCC GCCTGCGAGGA AAGCGGATAAGCCTCTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAAGGCGATGGTTGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTC AATAACATTCCATTGCAATTGGGCAaaaaaaaaa ] [+] EMBL BE230046 [ ACCATG CTGTATTTGCCAGGAAGAATATGCCGAAGGTGAGGA CATGGGCAGACTAGA CTGTGGGCATGACTTCCACACCGCAT GCATCAAACAAT GGCTGGTTAT AAAAAAT CTGT GCCCTATCTGT AAAAAGA CAGGACT GGGCA CTTAATTTT GCGCGCTTCC GCCTGCGAGGA AAGCGGATAAGCCTCTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAAGGCGATGGTCGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTC AATAACATTCAATTGCAATTGGGCATTTCCTAAGTTTTGCCTGTCATTTTTTTGTCCCCCTTTGGAGGTTGCCTGTGTTCTTGCTCTGAGTTGGGAAGTTGGAAGTTGTAACCAA] [+] EMBL C99176 [ TATTTGCCAGGAAGAATATGCCGAAGGTGAGGA CATGGGCAGCCTAGA CTNTGGGCATGACTTCCACACCGCAT GCATCAAACAAT GGCTGGTTAT AAAAAAT CTGT GCCCTATCTGT AAAAAGA CAGGACT GGGCA CTTAATTTT GCGTGCTTCC GCCTGCGAGGA AAGCGGATAAGCCTCTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAAGGCGATGGTTGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTC AATAACATTCAATTGCAATTGGGCATTTCCTAAAAAAAa ] [+] EMBL BI807121 [ T GGGCA CTTAATTTT GCGTGCTTCCTGCCTGCGAGGATAAGCGGATAAGCCTCTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAA GCGAT GTTGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTCAAATAACATTCAATTGCAATTGGCCATTTCCTAAAAA ] consensusID : consensus_14069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [TTTTTTTTTTTTGCTGATGCTAGGGAAGCGGTTCTGTAACATTAGCCGATTGGCGTCCGCTATCTGTGACGGATTCCACCATTTGTCAATAAATTATTGACCTTGTAGTTGAGGATCGTCAACCTCAAGTTGTAAAACATTGATTTTTAATGGGTGATGTTTTATTACATTGAACTCATTTAAGTACCTCATAAGTTATCCAAGGAAGACAGTAAAGTTTCGATGCATCAACATAGGATCACTATGCTATCTTCCTCAGAAACATGTCACCTTGGTTCTAGTTCGAACAACCAAGCCATGGATCAGCAGAATTTACTGCCCAGCAACCCCACCGCAAATGAACAGAATTTACTTCCAAATACTCTAGAGGATGATGATTACCCACATTATTTACTTGGTAGTCATGAGGTGGAAATGCCAAATGGAAGCGTGATTGGTCAGCAAAATACAAGCTTGAACTTATGGGATTCAGCTGGATCTAGCTCGATGGGCTGGGTAGCTGATCATGATAGTCTTTTTGAGGCCGAAAGGGAACATTNTGCTCCTGCTTTGTCTATCCCAGCTCCCTTAATTATTGGAGGGAGAAGACATGAAGGCAGTAGTTCATTGCCTTCACAGAGCTTAACTTAGACCTTAATCTTAATCAGGCTGATCAGTTTG] [+] EMBL CA763625 [TTTTTTTTTTTTGCTGATGCTAGGGAAGCGGTTCTGTAACATTAGCCGATTGGCGTCCGCTATCTGTGACGGATTCCACCATTTGTCAATAAATTATTGACCTTGTAGTTGAGGATCGTCAACCTCAAGTTGTAAAACATTGATTTTTAATGGGTGATGTTTTATTACATTGAACTCATTTAAGTACCTCATAAGTTATCCAAGGAAGACAGTAAAGTTTCGATGCATCAACATAGGATCACTATGCTATCTTCCTCAGAAACATGTCACCTTGGTTCTAGTTCGAACAACCAAGCCATGGATCAGCAGAATTTACTGCCCAGCAACCCCACCGCAAATGAACAGAATTTACTTCCAAATACTCTAGAGGATGATGATTACCCACATTATTTACTTGGTAGTCATGAGGTGGAAATGCCAAATGGAAGCGTGATTGGTCAGCAAAATACAAGCTTGAACTTATGGGATTCAGCTGGATCTAGCTCGATGGGCTGGGTAGCTGATCATGATAGTCTTTTTGAGGCCGAAAGGGAACATTNTGCTCCTGCTTTGTCTATCCCAGCTCCCTTAATTATTGGAGGGAGAAGACATGAAGGCAGTAGTTCATTGCCTTCACAGAGCTTAACTTAGACCTTAATCTTAATCAGGCTGATCAGTTTG] consensusID : consensus_14069#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [CGAACCATGCTGCATTTGACAAGAAGAATATAGCGAAAGCGAGGAGATCGCAGACTAGACTGTAGGCATGACTTTGACACCGCATGCCTCATACTGTGGGTGGTTATAATAAATGTGCACCCTATGTGTAACGAGACAGGACTGGACACTTAATTTTGCGCGCTTCCGCCTGCGAGGAAAGCGGATAAGCCTGTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAAGGCGATGGTCGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTCAATAACATTCAATTGCAATTGGGCATTTCCTAAGTTTTGCCTGTCATTTTTTTGTCCCCTTTGGAGGTTGCCTGTGTTCT] [+] EMBL BE230047 [CGAACCATGCTGCATTTGACAAGAAGAATATAGCGAAAGCGAGGAGATCGCAGACTAGACTGTAGGCATGACTTTGACACCGCATGCCTCATACTGTGGGTGGTTATAATAAATGTGCACCCTATGTGTAACGAGACAGGACTGGACACTTAATTTTGCGCGCTTCCGCCTGCGAGGAAAGCGGATAAGCCTGTTTAGACCGAGTGGTTGGTTATAAGGCATGTTACACCTTCAAGATCCAACATACAGGTGGAATTTATACTATAGGGTGGTACATGGTACTTTACCAGAAAGGCGATGGTCGTAGACCTGGAGTTTCTTTTTCCCTTTTGTTTAAACCTAGATTTGAAGTTTAAAATTTATTCAATAACATTCAATTGCAATTGGGCATTTCCTAAGTTTTGCCTGTCATTTTTTTGTCCCCTTTGGAGGTTGCCTGTGTTCT] consensusID : consensus_14069#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence [TGGGCATGACTTCCACACCGCATGCATCAAACAATGGCTGGTTATAAAAAATCTGGCCTATCTGAAAAAGACAGGACTGGGCACTTAATTTGGGCTTCGCTGCGAGGAAAGCGGATAAGCTCTTTAGACGAGTGGTTGGTTATAGGCAGTTACACTGAGCAC] [+] EMBL AA751081 [TGGGCATGACTTCCACACCGCATGCATCAAACAATGGCTGGTTATAAAAAATCTGGCCTATCTGAAAAAGACAGGACTGGGCACTTAATTTGGGCTTCGCTGCGAGGAAAGCGGATAAGCTCTTTAGACGAGTGGTTGGTTATAGGCAGTTACACTGAGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CCCCCCTATTTTTTCTTCCCATCTCTCCCCACCTCCTCTCCTCCTCCTCCTTCCAGCCGA 60 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 AGCCACGCGCGGACGGGAGAGAGGGGAAGGACGCGGCCGCGGCTCGCCTCTCCCCCCCCC 120 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CCTCGCTTGCCGCCGATCGGCGATCGGGGCGGCGGGACGATCCCCGGAGGGAGCAGCCGG 180 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CGCGGAGTCCGGAAGCAGTTTTGTAGCGTTATCCAATTGGCTTCCGCTATCTGCAACAGT 240 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TTCCACCATTTGTCAATAAATTACTGACCTTGTAGTTGAGGGAAGCGGTTCTGTAACATT 300 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 AGCCGATTGGCGTCCGCTATCTGCGACGGATTCCACCATTTGTCAATAAATTATTGACCT 360 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TGTAGTTGAGGATCGTCAACCTCAAGTTGTAAAACATTGATTTTTAATGGGTGATGTTTT 420 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ATTACATTGAACTCATTTAAGTACCTCATAAGTTATCCAAGGAAGACAGTAAAGTTTCGA 480 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TGCATCAACATAGGATCACTATGCTATCTTCCTCAGAAACATGTCACCTTGGTTCTAGTT 540 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CGAACAACCAAGCCATGGATCAGCAGAATTTACTGCCCAGCAACCCCACCGCAGATGAAC 600 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 AGAATTTACTTCCAAATACTCTAGAGGATGATGATTACCCACATTATTTACTTGGTAGTC 660 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ATGAGGTGGAAATGCCAAATGGAAGCGTGATTGGTCAGCAAAATACAAGCTTGAACTTAT 720 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 GGGATTCAGCTGGATCTAGCTCGATGGGCTGTGTAGCTGATCATGATAGTCTTTTTGAGG 780 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CCAAAAGGGAACATTTTGCTCCTGCTTTGTCTATCCGAGCTCCCTTAATTATTGGAGGGA 840 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 GAAGACATGAAGGCAGTAGTTCATTGCCTTCACAGAGCTTAAACTTAGACCTTAATCTTA 900 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ATCAGGCTGATCAGTTTGATTCTGAGGATGTTGATATGATTCAGAGTAATGGACAACCAG 960 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 GGATAAACGCTTTTCCTCTCAACAGGGGCCTTTCCATTCCTGAGCATGTTCTGCGCCATA 1020 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CAAATTCTTCCAGTGCTACAGGAAATCCTTCACAGGTTGCAAGCTTTTCTGATGGAATGA 1080 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CAGGCCAAGAAGTTAACCTGTTTGGTGGGCATCGTTCATCTTGCAAGAGAAAGAATATTG 1140 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ATGGGAGTCTTGCAGAGTCTTCTGCCAATGGTAGTTCACGTAATAATCAGCGAAATAATA 1200 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TTATACTGGAACCTTCTCCATCCAGTCATGAAAGCACTTCTGGTTTAACTGCACCTGCCC 1260 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CTACAAACCATGTTTTTTCATACTCTCCTGTGGAACAGCTAAACCAGAATACCAATATGT 1320 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CTGCAAATGCTATGTTGTCTGATCATTATTCACTATATGGTGATCATGAGCGTGAGAGAT 1380 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TTCTGAGGAATACCCGGATGAGAACAAGCCCTAATGAGTATGATCAATCATCGTCCAATC 1440 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TCTTGCCTGAAGGAAGTCTCAGGTGTTCTGTTTATCAGCCTACTCAGCAACAGTCTTTGT 1500 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TTATTCCAGTACAACCTAGAGCATCGAGCTCTTCAACAAGTTCTCTTAGTCGGCCTTATG 1560 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TGCCTGCTGTCACTCAATTCTCACAAAATTTGCACCGTGCTCCATCAAGTGGCAATTTTG 1620 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 GTTCGAGAATAGGGATTTTTCCTAGTTCTGCTGATACAACAAACCAGTTATCTTCACAAG 1680 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ATCCCAACAGGAGCTCGGTGAGAGGCAATTTTCCTGAGCCCCTTCTGTTAGGTTCTTCTC 1740 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TGTTTCCTTCTGACTCGGCAGAATTGCTATCTATGCCGGGAGGCAGAAGCAACCAACAAA 1800 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ATTCCAGCTCCACAATTCGAACTGCTGTAAATATAGGAGCTCAACAGATTGCTGGGTTAA 1860 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ATGCATCCCAGCCTACTTCAAGCTCAAGGGGTTCGGTTGATATTGTTAGGAGATCCTTGC 1920 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 AGGCTGCTAGCGTTCCTCAGTCCAGAGGTTCAAGCATTACATCACAGCAGCAACGTGGGC 1980 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ATTCATCCACATCACATGAGATTCGAAGCCATCAACCTGGATCCAGCTCTCGTGCCAATC 2040 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 AGCAGCATTATGTCAGGGCTGTTCCTCACTCTGTAGATAGGCAAAACTCGAATTACTTGG 2100 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ACCTGCAGTCTTTTATGCAAAGCATTGCTGCTTCAAGAGACGGAATTAGGACAGTCTCAG 2160 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 AGTCTGCCAATCAACTTGTGCATCTTCGCAATGTTGTTGAACAAATTCGTCAGGGAAGAG 2220 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 GTGGAAGGTTTGAGGATCCTAATTTTGAACGTGCACTTTTTGCAAGGCGTGCCAGTTTAA 2280 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TTGACAGACATCGTGACATGCGGCTTGATGTGGATAATATGTCATATGAGGAATTGTTGG 2340 consensus_14069#1 ------------------------------------------------------------ consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CACTTGGTGAACGCATTGGGTATGTAAACACTGGACTTAGTGAGGATAAAATTAGGACTG 2400 consensus_14069#1 ----------------------------------------------TTTTTTTTTTTTGC 14 consensus_14069#2 -------------------------------------------------------CGAAC 5 consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 GTTTGAAGCAATGGAAATATGTGAGCATACCGATTGAAGAACCTCTAACTGGTGTTGAAC 2460 consensus_14069#1 TGATGCTAGGGAAGCGGTTCTGTAACATTAGCCGATTGGCGTCCGCTATCTGTGACGGAT 74 consensus_14069#2 CATGCTGCATTTGACAAGAAGAATATAGCGAAAGCGAGGAGATCG-CAGACTAGACTGTA 64 consensus_14069#3 ----------------------------------------------------------TG 2 consensus_14069#0 CATGCTGTATTTGCCAGGAAGAATATGCCGAAGGTGAGGACATGGGCAGACTAGACTGTG 2520 consensus_14069#1 TCCACCATTTGTCAATAAATTATTGACCTTGTAGTTGAGGATCGTCAACCTCAAGTTGTA 134 * consensus_14069#2 GG-CAT-GACTTTGACACCGC-ATGCCTCAT-ACTGTGGGTGGTTATAATAAATGTGCAC 120 consensus_14069#3 GG-CAT-GACTTCCACACCGC-ATGCATCAA-ACAATGGCTGGTTATAAAAAATCTGG-- 56 consensus_14069#0 GG-CAT-GACTTCCACACCGC-ATGCATCAA-ACAATGGCTGGTTATAAAAAATCTGTGC 2576 consensus_14069#1 AAACATTGATTTTTAATGGGTGATGTTTTATTACATTGAACTCATTTAAGTACCTCATAA 194 *** ** ** * * *** * * ** ** * *** * consensus_14069#2 CCTATGTGTAACGAGACAGGA----CTGGACAC-TTAATTTTG---CGCGCTTCCGCCTG 172 consensus_14069#3 CCTATCTGAAA-AAGACAGGA----CTGGGCAC-TTAATTTGG------GCTTCG--CTG 102 consensus_14069#0 CCTATCTGTAAAAAGACAGGA----CTGGGCAC-TTAATTTTG---CGTGCTTCCGCCTG 2628 consensus_14069#1 GTTATCCAAGG-AAGACAGTAAAGTTTCGATGCATCAACATAGGATCACTATGCTATCTT 253 *** ****** * * * * * ** * * * * ** consensus_14069#2 CGAGGAAAGCGGATAAGCCTG--TTTAGACCGAGTGGTTG-GTTATAA---GGCATGTTA 226 consensus_14069#3 CGAGGAAAGCGGATAAGCTC---TTTAGAC-GAGTGGTTG-GTTATA----GGCA-GTTA 152 consensus_14069#0 CGAGGAAAGCGGATAAGCCTC--TTTAGACCGAGTGGTTG-GTTATAA---GGCATGTTA 2682 consensus_14069#1 CCTCAGAAACATGTCACCTTGGTTCTAGTTCGAACAACCAAGCCATGGATCAGCAGAATT 313 * ** * * * * * *** ** * ** *** * consensus_14069#2 CACCTTC-AAGA----TCCAACATACAGGTGGAATTTA--------TACTATAGGGTGGT 273 consensus_14069#3 CAC--TG-AGCA----C------------------------------------------- 162 consensus_14069#0 CACCTTCCAAGA----TCCAACATACAGGTGGAATTTA--------TACTATAGGGTGGT 2730 consensus_14069#1 TACTGCCCAGCAACCCCACCGCAAATGAACAGAATTTACTTCCAAATACTCTAGAGGATG 373 ** * * consensus_14069#2 ACATGGTACTTTACCAGAAAGGCGATGGTCGTAGACCTGGAGTTTCTTTTTCCCTTTTGT 333 consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 ACATGGTACTTTACCAGAAAGGCGATGGTTGTAGACCTGGAGTTTCTTTTTCCCTTTTGT 2790 consensus_14069#1 ATGATTACCCACATTATTTACTTGGTAGTCATGAGGTGGAAATGCCAAATGGAAGCGTGA 433 consensus_14069#2 TTAAACCTAGATTTGAAGTTTAAAATTTATTCAATAACATTCAATTGCAATTGGGCATTT 393 consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 TTAAACCTAGATTTGAAGTTTAAAATTTATTCAATAACATTCAATTGCAATTGGGCATTT 2850 consensus_14069#1 TTGGTCAGCAAAATACAAGCTTGAACTTATGGGATTCAGCTGGATCTAGCTCGATGGGCT 493 consensus_14069#2 CCTAAGTTTTGCCTGTCATTTTTTTGTCCCCTTTGGAGGTTGCCTGTGTTCT-------- 445 consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 CCTAAAAAAAGCCTGTCATTTTTTTGTCCCCTTTGGAGGTTGCCTGTGTTCTTGCTCTGA 2910 consensus_14069#1 GGGTAGCTGATCATGATAGTCTTTTTGAGGCCGAAAGGGAACATTNTGCTCCTGCTTTGT 553 consensus_14069#2 ------------------------------------------------------------ consensus_14069#3 ------------------------------------------------------------ consensus_14069#0 GTTGGGAAGTTGGAAGTTGTAACCAA---------------------------------- 2936 consensus_14069#1 CTATCCCAGCTCCCTTAATTATTGGAGGGAGAAGACATGAAGGCAGTAGTTCATTGCCTT 613 consensus_14069#2 ----------------------------------------------- consensus_14069#3 ----------------------------------------------- consensus_14069#0 ----------------------------------------------- consensus_14069#1 CACAGAGCTTAACTTAGACCTTAATCTTAATCAGGCTGATCAGTTTG 660 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||