These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2333 fasta sequence [CCCTCCTAAGGGAATAAGCTTGCGGCCGCAGCGCGTGGGTTCCCAAATCGCGAAATTTTC-TTTTCCCCCAAAAAACCGAATAAAGAGAAATCTCTCCGAGCGAATTCGACGAGATCGGAGGCTCGGATCGAGGTATTCTCCTTCTGATTTGATTGGATTCGGGATCTGCTGGCGGGGATCCATCTTTAGGTAGGATTTCATAATTTTATGGACTTTGATTGCAAAACAGCAAGAGGAGACTCTTCATCTGTGAATCGTTCATGCATTGTCACTGAAGGCACTGTCGTCCAGGCAAAGCCCGTTTCTCACAACGGGAAAGCTAAACACTGGAATAGCCTCAGTACATTGAATAACCAGAAGTGCAGTTATGAATTACTTTCCGACCCAAAGAAAAATGTTGAAACAAGTGATGGTGAGACCGCCTCAAAGTGTGACTCATGGTGCTTCACTGATTTGCCATCCGCATTGGTCTGTGAAGTGCTTGAACACCTCGATCCAAAGGAACTTGGCATTGTATCTTGCGTCTCCACCCTACTGCATACCCTAGCCACAGATCATCAGGGGTGGAAGAAGTTCTACTGTGAAAGGTGGGGGATTCCTACTCCTCCAGTCACCCTCAATGGGCCCTTGGTTCCAGGAGGAACTTCAGATTGGAAGTCTTGGAAAACATTATTTGTGGAGCGGGAGTTTCGAAGTAAATCATTCATGGGAAGATTCAGTGTGGATGTTCTCCGTGACCACAGTGAGGATGTACGCACTGTGTTCCTTCTAGCATCAGTAAATCTGATATTTACTGGTGGTAATGACTCTGTGATCCGAATGTGGGACTTGGAGGAAGGGCTTTTGATTGATAAGTCCCGCCCACTTTGTTGCACCATCCGGGCCATTGCAGCTGACACTAGGCTTTTGGTCACTGCAGGAACCAATGCCTTTATTCATTGTTGGAGGGCTGTTGAAGGTAATTCTTACCCTTTCCACATCTCTGGGAATGGCACTGACCAGAGTCCTGAGTTTCGCCTTTGGGGGCATGAAGGACCTGTGACTTGTCTTGCCTTGGATTCATTGAGGATTTTCAGTGGTAGCTGGGATATGACTGTCCGTGTTTGGGACAGATCCGAAATGAAATGTGTTCAGAAGTTCATGCATGCAGATTGGGTTTGGAGCGTGGCACCTCATGGAAATACTGTTGCCAGTACAGCTGGTAGGGATGCCTATGTATGGGATATCAGGAGTGGTGAGTTGGAAAATGTTATTTCCAATGCCCATTATGGTAATGCATTTTCTTTAGCTCGAACACACCTAGCTGATGTGCTGTTTACCGGAGGAGAGGATGGGGCAATTCGCCTGTTCAATGTTTCTGAGGTCTCTGATGATGAAGATATTAAGCCAGCTGCTACTTGGGTTCCACATACCGGCCCTGTTCATTCCCTCGCTTTTGAGTATCCATGGCTTGTCTCAGCCTCTAGTGATGGCAGGGTTGCACTGATTGATTTGAGGAAGCTTCTGACCCCAAGAAAGTCATCAAAACAACCATTCAGGGTTAAGAACTTTGATCCAAGTTCCATTGAACCTCCACAGAGAATGCTTCATGGCTTTGGGTGCGATCTTTTTTCTGTCGCCATTGGTGCAGACAGGATTGTCTGTGGAGG-CGAGGATGGCGCTGTC-AAAGTCTGGAACTTCT-CAGAAGCACTGGAGATTGAGAAGAGGGCACAAGCTCTAAGAAGTATGAGGCAGGAGAACCGCAT-GAGGCGAAAAAAGGCACAAGTAGAGATGAATGCAAATGGTAGAAGGTCTGACCAATGTGGCTCAATAGCCATGAAAAGAAACCAACTGAAGGGTGATAAGAGTGTCACTTGGCACAGCAAGCGTGCCATCAATGATAAGGTCAAGTCTTAGATTAGGATTTGTACCCTTCACAACTTTACACTCTACAGTAG-CCATGAGTTGATAGTTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAATCCGCATATGCAATTCTTATTCGATATGGCATATATTGATCTAACAGAAGCTCTCATTGTCTTACTGTTTTGAGCTCTAGTTGCATTTGGGTTTTGTTCGTATCTTTCTGCTGGTAGCTGTTATGAATGGGAATCTACATTGAACTATTCCAGGAATAATAAGCTTCTGTAATTATGTCACTGCTGGATTCTTAGAACATTACTTTTGCTGTTACGTGGTCTGCAATAAGAAAATCCTGCATTCCGACTCAAAAAAAAAAAAAAAA] [+] EMBL BI305332 [CCCTCCTAAGGGAATAAGCTTGCGGCCGCAGCGCGTGGGTTCCCAAATCGCGAAATTTTCTTTTTCCCCCAAAAAACCGAATAAAGAGAAATCTCTCCGAGCGAATTCGACGAGATCGGAGGCTCGGATCGAGGTATTCTCCTTCTGATTTGATTGGATTCGGGATCTGCTGGCGGGGATCCATCTTTAGGTAGGATTTCATAATTTTATGGACTTTGATTGCAAAACGGCAAGAGGAGACTCTTCATCTGTGAATCGTTCATGCATTGTCACTGAAGGCACTGTCGTCCAGGCAAAGCCCGTTTCTCACAACGGGAAAGCTAAACACTGGAATAGCCTCAGTACATTGAATAACCAGAAGTGCAGTTATGAATTACTTTCCGACCCAAAGAAAAATGTTGAAACAAGTGATGGTGAGACCGCCTCAAAGTGTGACTCATGGTGCTTCACTGATTTGCCATCCGCATTGGTCTGTGAAGTGCTTGAACACCTCGATCCAAAGGAACTTGGCATTGTATCTTGCGTCTCCACCCTACTGCATACCCTAGCCACAGATCATCAGGGGTGGAAGAAGTTCTACTGTGAAAGGTGGGGGATTCCTACTCCTCCAGTCACCCTCAATGGGCCCTTGGTTCCAGGAGGAACTTCAGATTGGAAGTCTTGGAAAACATTATTTGTGGAGCGGGAGTTTCGAAGTAAATCATTCATGGGAAGATTCAGTGTGGATGT ] [+] EMBL AK111585 [ CCCAAATCGCGAAATTTTC TTTTCCCCCAAAAAACCGAATAAAGAGAAATCTCTCCGAGCGAATTCGACGAGATCGGAGGCTCGGATCGAGGTATTCTCCTTCTGATTTGATTGGATTCGGGATCTGCTGGCGGGGATCCATCTTTAGGTAGGATTTCATAATTTTATGGACTTTGATTGCAAAACAGCAAGAGGAGACTCTTCATCTGTGAATCGTTCATGCATTGTCACTGAAGGCACTGTCGTCCAGGCAAAGCCCGTTTCTCACAACGGGAAAGCTAAACACTGGAATAGCCTCAGTACATTGAATAACCAGAAGTGCAGTTATGAATTACTTTCCGACCCAAAGAAAAATGTTGAAACAAGTGATGGTGAGACCGCCTCAAAGTGTGACTCATGGTGCTTCACTGATTTGCCATCCGCATTGGTCTGTGAAGTGCTTGAACACCTCGATCCAAAGGAACTTGGCATTGTATCTTGCGTCTCCACCCTACTGCATACCCTAGCCACAGATCATCAGGGGTGGAAGAAGTTCTACTGTGAAAGGTGGGGGATTCCTACTCCTCCAGTCACCCTCAATGGGCCCTTGGTTCCAGGAGGAACTTCAGATTGGAAGTCTTGGAAAACATTATTTGTGGAGCGGGAGTTTCGAAGTAAATCATTCATGGGAAGATTCAGTGTGGATGTTCTCCGTGACCACAGTGAGGATGTACGCACTGTGTTCCTTCTAGCATCAGTAAATCTGATATTTACTGGTGGTAATGACTCTGTGATCCGAATGTGGGACTTGGAGGAAGGGCTTTTGATTGATAAGTCCCGCCCACTTTGTTGCACCATCCGGGCCATTGCAGCTGACACTAGGCTTTTGGTCACTGCAGGAACCAATGCCTTTATTCATTGTTGGAGGGCTGTTGAAGGTAATTCTTACCCTTTCCACATCTCTGGGAATGGCACTGACCAGAGTCCTGAGTTTCGCCTTTGGGGGCATGAAGGACCTGTGACTTGTCTTGCCTTGGATTCATTGAGGATTTTCAGTGGTAGCTGGGATATGACTGTCCGTGTTTGGGACAGATCCGAAATGAAATGTGTTCAGAAGTTCATGCATGCAGATTGGGTTTGGAGCGTGGCACCTCATGGAAATACTGTTGCCAGTACAGCTGGTAGGGATGCCTATGTATGGGATATCAGGAGTGGTGAGTTGGAAAATGTTATTTCCAATGCCCATTATGGTAATGCATTTTCTTTAGCTCGAACACACCTAGCTGATGTGCTGTTTACCGGAGGAGAGGATGGGGCAATTCGCCTGTTCAATGTTTCTGAGGTCTCTGATGATGAAGATATTAAGCCAGCTGCTACTTGGGTTCCACATACCGGCCCTGTTCATTCCCTCGCTTTTGAGTATCCATGGCTTGTCTCAGCCTCTAGTGATGGCAGGGTTGCACTGATTGATTTGAGGAAGCTTCTGACCCCAAGAAAGTCATCAAAACAACCATTCAGGGTTAAGAACTTTGATCCAAGTTCCATTGAACCTCCACAGAGAATGCTTCATGGCTTTGGGTGCGATCTTTTTTCTGTCGCCATTGGTGCAGACAGGATTGTCTGTGGAGG CGAGGATGGCGCTGTC AAAGTCTGGAACTTCT CAGAAGCACTGGAGATTGAGAAGAGGGCACAAGCTCTAAGAAGTATGAGGCAGGAGAACCGCAT GAGGCGAAAAAAGGCACAAGTAGAGATGAATGCAAATGGTAGAAGGTCTGACCAATGTGGCTCAATAGCCATGAAAAGAAACCAACTGAAGGGTGATAAGAGTGTCACTTGGCACAGCAAGCGTGCCATCAATGATAAGGTCAAGTCTTAGATTAGGATTTGTACCCTTCACAACTTTACACTCTACAGTAG CCATGAGTTGATAGTTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAATCCGCATATGCAATTCTTATTCGATATGGCATATATTGATCTAACAGAAGCTCTCATTGTCTTACTGTTTTGAGCTCTAGTTGCATTTGGGTTTTGTTCGTATCTTTCTGCTGGTAGCTGTTATGAATGGGAATCTACATTGAACTATTCCAGGAATAATAAGCTTCTGTAATTATGTCACTGCTGGATTCTTAGAACATTACTTTTGCTGTTACGTGGTCTGCAATAAGAAAATCCTGC ] [+] EMBL D43026 [ TCCCCCAAAAAACCGAATAAAGAGAAATCTCTCCGAGCGAATTCGACGAGATCGGAGGCTCGGATCGAGGTATTCTCCTTCTGATTTGATTGGATTCGGGATCTGCTGGCGGGGATCCATCTTTAGGTAGGATTTCATAATNTTATGGACTTTGATTGCAAAACAGCAAGAGGAGACTCTTCATCTGTGAATCGTTCATGCATTGTCACTGAAGGCACTGTCGTCCAGGCAAAGCCCGTTTCTCACAACGGGAAAGCTAAACACTGGAATAGCCTCAGTACATTGAATAACCAGAAGTGCAGTTATGAATTA TTTCCGACCCAAAGGAAAATGTTG AACAAGTGATGGTGAGACCGCCTCAAAGTGTGACT ] [+] EMBL CB669292 [ ccttCCAAAAAACCGAATAAAGAGAAATCTCTCCGAGCGAATTCGACGAGATCGGAGGCTCGGATCGAGGTATTCTCCTTCTGATTTGATTGGATTCGGGATCTGCTGGCGGGGATCCATCTTTAAGTAGGATTTCATAATTTTATGGACTTTGATTGCAAAACAGCAAGAGGAGACTCTTCATCTGTGAATCGTTCATGCATTGTCACTGAAGGCACTGTCGTCCAGGCAAAGCCCGTTTCTCACAACGGGAAAGCTAAACACTGGAATAGCCTCAGTACATTGAATAACCAGAAGTGCAGTTATGAATTACTTTCCGACCCAAAGAAAAATGTTGAAACAAGTGATGGTGAGACCGCCTCAAAGTGTGACTCATGGTGCTTCACTGATTTGCCATCCGCATTGGTCTGTGAAGTGCTTGAACACCTCTATCCAAAGGAACTTGGCATTGTATCTTGCGTCTCCACCCTACTGCATACCCTAGCCACAGATCATCAGGGGTGGAACAAGTTCTACTGTGAAAGGTGGGGGATTCCTACTCCTCCAGTCACCCTCAATGGGCCCTTGGTTCCAGGAGGAACTTCATATTGGAAGTCTTGGAAAACATTATTTGTGGAGCGGGAGTTTCGAAGTAAATCATTCATGGGAAGATTCAGTGTGGATGTTCTCCGTGACCACAGTGAGGATGTACGCACTGTGTTCCTTCTAGCATCAGTAGATC ] [+] EMBL AU182222 [ GAATAAAGAGAAATCTCTCCGAGCGAATTCGACGAGATCGGAGGCTCGGATCGAGGTATTCTCCTTCTGATTTGATTGGATTCGGGATCTGCTGGCGGGGATCCATCTTTAGGTAGGATTTCATAATTTTATGGACTTTGATTGCAAAACAGCAAGAGGAGACTCTTCATCTGTGAATCGTTCATGCATTGTCACTGAAGGCACTGTCGTCCAGGCAAAGCCCGTTTCTCACAACGGGAAAGCTAAACACTGGAATAGCCTCAGTACATTGAATAACCAGAAGTGCAGTTATGAATTACTTTCCGACCCAAAGAAAAATGTTGAAACAAGTGATGGTGAGACCGCCTCAAAGTGTGACTCATGGTGCTTCACTGATTTGCCATCCGCATTGGTCTGTGAAGTGCTTGAACACCTCGATCCAAA ] [+] EMBL CB622818 [ GCAGTTATGAATTACTTTCCGACCCAAAGAAAAATGTTGAAACAAGTGATGGTGAGACCGCCTCAAAGTGTGACTCATGGTGCTTCACTGATTTGCCATCCGCATTGGTCTGTGAAGTGCTTGAACACCTCGATCCAAAGGAACTTGGCATTGTATCTTGCGTCTCCACCCTACTGCATACCCTAGCCACAGATCATCAGGGGTGGAAGAAGTTCTACTGTGAAAGGTGGGGGATTCCTACTCCTCCAGTCACCCTCAATGGGCCCTTGGTTCCAGGAGGAACTTCAGATTGGAAGTCTTGGAAAACATTATTTGTGGAGCGGGAGTTTCGAAGTAAATCATTCATGGGAAGATTCAGTGTGGATGTTCTCCGTGACCACAGTGAGGATGTACGCACTGTGTTCCTTCTAGCATCAGTAAATCTGATATTTACTGGTGGTAATGACTCTGTGATCCGAATGTGGGACTTGGAGGAAGGGCTTTTGATTGATAAGTCCCGCCCACTTTGTTGCACCATCCGGGCCATTGCAGCTGACACTAGGCTTTTGGTCACTGCAGGAACCAATGCCTTTATTCATTGTTGGAGGGCTGTTGAAGGTAATTCTTACCCTTTCCACATCTCTGGGAATGGCACTGACCAGAGTCCTGAGTTTCGCCTTTGGGGGCATGAAGGACCTGTGACTTGTCTTGCCTTGGATTCATTGAGGATTTTCAGTGGTAGCTGGGATATGACTGTCCGTGTTTGGGACAGATCCGACATGAAATGTGTTCAGAAGTTCATGCATGCAGATTGCGTTTGGAGCGT ] [+] EMBL C26424 [ TCATGCATGCAGATTGGGTTTGGAGCGTGGCACCTCATGGAAATACTGTTGCCAGTACAGCTGGTAGGGATGCCTATGTATGGGATATCAGGAGTGGTGAGTTGGAAAATGTTATTTCCAATGCCCATTATGGTAATGCATTTTCTTTAGCTCGAACACACCTAGCTGATGTGCTGTTTACCGGAGGAGAGGATGGGGCAATTCGCCTGTTCAATGTTTCTGAGGTCTCTGATGATGAAGATATTAAGCCAGCTGCTACTTGGGTTCCACATACCGGCCCTGTTCATTCCCTCGCTTTTGAGTATCCATGGCTTGTCTCAGCCTCTAGTGATGGCAGGGTTGCACTGATTGATTTGAGGAAGCTTCTGACCCCAAGAAAGTCATC AAACAACCATTCAGGGTTAAG ACTTTGATCCAAG TCCA TGNACCTCCACAGAGA ] [-] EMBL CB622819 [ CACACNTAGCTGATGTGCTGTTTACCGGAGGAGAGGATGGGGCAATTCGCCTGTTCAATGTTTCTGAGGTCTCTGATGATGAAGATATTAAGCCAGCTGCTACTTGGGTTCCACATACCGGCCCTGTTCATTCCCTCGCTTTTGAGTATCCATGGCTTGTCTCAGCCTCTAGTGATGGCAGGGTTGCACTGATTGATTTGAGGAAGCTTCTGACCCCAAGAAAGTCATCAAAACAACCATTCAGGGTTAAGAACTTTGATCCAAGTTCCATTGAACCTCCACAGAGAATGCTTCATGGCTTTGGGTGCGATCTTTTTTCTGTCGCCATTGGTGCAGACAGGATTGTCTGTGGAGG CGAGGATGGCGCTGTC AAAGTCTGGAACTTCT CAGAAGCACTGGAGATTGAGAAGAGGGCACAAGCTCTAAGAAGTATGAGGCAGGAGAACCGCAT GAGGCGAAAAAAGGCACAAGTAGAGATGAATGCAAATGGTAGAAGGTCTGACCAATGTGGCTCAATAGCCATGAAAAGAAACCAACTGAAGGGTGATAAGAGTGTCACTTGGCACAGCAAGCGTGCCATCAATGATAAGGTCAAGTCTTAGATTAGGATTCGTACCCTTCACAACTTTACACTCTACAGTAG CCATGAGTTGATAGTTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAATCCGCATGGTCAATTCTTATTCGATATGGCATATATTGATCTATTAAAAGCTCTCAT ] [-] EMBL CB669293 [ GGGCAATTCGCCTGTTCAATGTTTCTGAGGTCTCTGATGATGAAGATATTAAGCCAGCTGCTACTTGGGTTCCACATACCGGCCCTGTTCATTCCCTCGCTTTTGAGTATCCATGGCTTGTCTCAGCCTCTAGTGATGGCAGGGTTGCACTGATTGATTTGAGGAAGCTTCTGACCCCAAGAAAGTCATCAAAACAACCATTCAGGGTTAAGAACTTTGATCCAAGTTCCATTGAACCTCCACAGAGAATGCTTCATGGCTTTGGGTGCGATCTTTTTTCTGTCGCCATTGGTGCAGACAGGATTGTCTGTGGAGG CGAGGATGGCGCTGTC AAAGTCTGGAACTTCT CAGAAGCACTGGAGATTGAGAAGAGGGCACAAGCTCTAAGAAGTATGAGGCAGGAGAACCGCAT GAGGCGAAAAAAGGCACAAGTAGAGATGAATGCAAATGGTAGAAGGTCTGACCAATGTGGCTCAATAGCCATGAAAAGAAACCAACTGAAGGGTGATAAGAGTGTCACTTGGCACAGCAAGCGTGCCATCAATGATAAGGTCAAGTCTTAGATTAGGATTTGTACCCTTCACAACTTTACACTCTACAGTAG CCATGAGTTGATAGTTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAATCCGCATATGCAATTCTTATTCGATATGGCATATATTGATCTAAAAAAAaaga ] [-] EMBL CA760337 [ AGCTGCTACTTGGGTTCCACATACGNGCCCTGTTCATTCCCTCGCTTNTGAGTATCCATGGCTTGTCTCAGCCTCTAGTGATGGCAGGGTTGCACTGATTGATTTGAGGAAGCTTCTGACCNCAAGAAAGTCATCAAAACAACCATTCAGGGTTAAGAACTTTGATCCAAGTTCCATTGAACCTCCACAGAGAATGCTTCATGGCTTTGGGTGCGATCTTTTTTCTGTCGCCATTGGTGCAGACAGGATTGTCTGTGGAGG CGAGGATGGCGCTGTC AAAGTCTGGAACTTCT CAGAAGCACTGGAGATTGAGAAGAGGGCACAAGCTCTAAGAAGTATGAGGCAGGAGAACCGCAT GAGGCGAAAAAAGGCCCAAGTAGAGATGAATGCAAATGGTAGAAGGTTTGACCAATGTGGCTCAATAGCCATGAAAAGAAACCAACTGAAGGGTGATAAGAGTGTCACTTGGCACAGCAAGCGCGCCATCAATGATAAGGTCAAGTTTTAGATTAGGATTTGTACCCTTCACAACTTTACACTTTACAGTAG CCATGAGTTGATAGTTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAAaaaaaaaaa ] [-] EMBL CA760338 [ GCTTTTGAGTATCCATGGCTTGTCTCAGCCTCTAGTGATGGCAGGGTTGCACTGATTGATNTGAGGAAGCTTCTGACCCCAAGAAAGTCATCAAAACAACCATTCAGGGTTAAGAACTTTGATCCAAGTTCCATTGAACCTCCACAGAGAATGCTTCATGGCTTTGGGTGCGATCTTTTTTCTGTCGCCATTGGTGCAGACAGGATTGTCTGTGGAGG CGAGGATGGCGCTGTC AAAGTCTGGAACTTCT CAGAAGCACTGGAGATTGAGAAGAGGGCACAAGCTCTAAGAAGTATGAGGCAGGAGAACCGCAT GAGGCGAAAAAAGGCCCAAGTAGAGATGAATGCAAATGGTAGAAGGTCTGACCAATGTGGCTCAATAGCCATGAAAAGAAACCAACTGAAGGGTGATAAGAGTGTCACTTGGCACAGCAAGCGTGCCATCAATGATAAGGTCAAGTCTTAGATTAGGATTCGTACCCTTCACAACTTTACACTCTACAGTAG CCATGAGTTGATAGTTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAATCCGCATATTCAATTCTTATTCGATATGGCATATATTGATCTAAAAAAAaaaaaaaa ] [+] EMBL AU100722 [ GTGGAGGCCGAGGATGGCCCTGTCAAAAGTCTGGAACTTCT CAGAAGCNCTGGAGATTGAGAAGAGGCCACAAGCTCTAAGAAGTATGAGGCAGGAGAACCGCAT GAGGCGAAAAAAGGCACAAGTAGAGATGAATGC AATGGTAGAAGGTCTGACCAATGTGGCTCAATAGCCATGAAAAGAAACCAACTGAAGGGTGATAAGAGTGTCACTTGGCACAGCAAGCGTGCCATCAATGATAAGGTCAAGTCTTAGATTAGGATTTGTACCCTTCACAACTTTACACTCTACAGTAG CCATGAGTTGATAGTTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAATCCGCATATGCAATTCTTATTCGATATGGCATATATTGATCTAACAGAAGCTCTCATTGTCTTACTGTTTTGAGCTCTAGTTGCATTTGGGTTTTGTTCGTATCTTTCTGCTGGTAGCTGTTATGAATGGGAATCTACATTGAACTATTCCAGGAATAATAAGCTTCTGTAATTATGTCACTGCTGGATTCTTAGAACATTACTTTTGCTGTTACGTGGTCTGCAATAAGAAAATCCTGCATTCCGACTCAAAAAAAAAAAAAAA ] [+] EMBL C98576 [ C AAAGTCTGGAACTTCTCCAGAGCCACTGGAGATTGAGAAGAGGGCAC AGCTCTAAGAAGTATGAGGCAGGAGAACCGCATGGAGGCG AAAAAGGCACAAGTAGAGATGAATGCAAATGGTAGAAGGTCTGACCAATGTGGCTCAATAGCC TGAAAAGAAACCAACTGAAGGGTGATAAGAGTGTCACTTGGCACAGCAAGCGTGCCATCAATGATAAGGTCAAGTCTTAGATTAGGATTTGTACCCTTCACAACTTTACACTCTACAGTAGCCCATGAGTTGATAGTTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAATCCGCATATGCAATTCTTATTCGATATGGCATATATTGATCTAACAGAAGCTCTCATTGTCTTACTGTTTTGAGCTCTAGTTGCATTTGGGTTTTGTTCGTATCTTTCTGCTGGTAGCTGTTATGAATGGGAATCTACATTGAACTATTCCAGGAATAATAAGCTTCTGTAATTATGTCACTGCTGGATTCTTAGAACATTACTTTTGCTGTTACGTGGTCTGCAATAAGAAAATCCTGCATTCCGACTCAAAAAAAAAAAAAAAA] consensusID : consensus_14073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [TTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTTTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF327470 [TTCTTTTCTTGGAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTTTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14073#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 118 fasta sequence [CCGGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAATCCGCATATTCAATTCTTATTCGATATGGCATATATTGATCTNACAGAAGCTCTCATTGTCTAAAAAAAAAAA] [+] EMBL BQ906859 [CCGGAATTTTATAAGGTTACCAATGCAGTGTAGCCATGCATGAAATCCGCATATTCAATTCTTATTCGATATGGCATATATTGATCTNACAGAAGCTCTCATTGTCTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14073#0 CCCTCCTAAGGGAATAAGCTTGCGGCCGCAGCGCGTGGGTTCCCAAATCGCGAAATTTTC 60 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TTTTCCCCCAAAAAACCGAATAAAGAGAAATCTCTCCGAGCGAATTCGACGAGATCGGAG 120 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 GCTCGGATCGAGGTATTCTCCTTCTGATTTGATTGGATTCGGGATCTGCTGGCGGGGATC 180 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 CATCTTTAGGTAGGATTTCATAATTTTATGGACTTTGATTGCAAAACAGCAAGAGGAGAC 240 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TCTTCATCTGTGAATCGTTCATGCATTGTCACTGAAGGCACTGTCGTCCAGGCAAAGCCC 300 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 GTTTCTCACAACGGGAAAGCTAAACACTGGAATAGCCTCAGTACATTGAATAACCAGAAG 360 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TGCAGTTATGAATTACTTTCCGACCCAAAGAAAAATGTTGAAACAAGTGATGGTGAGACC 420 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 GCCTCAAAGTGTGACTCATGGTGCTTCACTGATTTGCCATCCGCATTGGTCTGTGAAGTG 480 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 CTTGAACACCTCGATCCAAAGGAACTTGGCATTGTATCTTGCGTCTCCACCCTACTGCAT 540 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 ACCCTAGCCACAGATCATCAGGGGTGGAAGAAGTTCTACTGTGAAAGGTGGGGGATTCCT 600 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 ACTCCTCCAGTCACCCTCAATGGGCCCTTGGTTCCAGGAGGAACTTCAGATTGGAAGTCT 660 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TGGAAAACATTATTTGTGGAGCGGGAGTTTCGAAGTAAATCATTCATGGGAAGATTCAGT 720 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 GTGGATGTTCTCCGTGACCACAGTGAGGATGTACGCACTGTGTTCCTTCTAGCATCAGTA 780 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 AATCTGATATTTACTGGTGGTAATGACTCTGTGATCCGAATGTGGGACTTGGAGGAAGGG 840 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 CTTTTGATTGATAAGTCCCGCCCACTTTGTTGCACCATCCGGGCCATTGCAGCTGACACT 900 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 AGGCTTTTGGTCACTGCAGGAACCAATGCCTTTATTCATTGTTGGAGGGCTGTTGAAGGT 960 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 AATTCTTACCCTTTCCACATCTCTGGGAATGGCACTGACCAGAGTCCTGAGTTTCGCCTT 1020 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TGGGGGCATGAAGGACCTGTGACTTGTCTTGCCTTGGATTCATTGAGGATTTTCAGTGGT 1080 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 AGCTGGGATATGACTGTCCGTGTTTGGGACAGATCCGAAATGAAATGTGTTCAGAAGTTC 1140 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 ATGCATGCAGATTGGGTTTGGAGCGTGGCACCTCATGGAAATACTGTTGCCAGTACAGCT 1200 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 GGTAGGGATGCCTATGTATGGGATATCAGGAGTGGTGAGTTGGAAAATGTTATTTCCAAT 1260 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 GCCCATTATGGTAATGCATTTTCTTTAGCTCGAACACACCTAGCTGATGTGCTGTTTACC 1320 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 GGAGGAGAGGATGGGGCAATTCGCCTGTTCAATGTTTCTGAGGTCTCTGATGATGAAGAT 1380 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 ATTAAGCCAGCTGCTACTTGGGTTCCACATACCGGCCCTGTTCATTCCCTCGCTTTTGAG 1440 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TATCCATGGCTTGTCTCAGCCTCTAGTGATGGCAGGGTTGCACTGATTGATTTGAGGAAG 1500 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 CTTCTGACCCCAAGAAAGTCATCAAAACAACCATTCAGGGTTAAGAACTTTGATCCAAGT 1560 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TCCATTGAACCTCCACAGAGAATGCTTCATGGCTTTGGGTGCGATCTTTTTTCTGTCGCC 1620 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 ATTGGTGCAGACAGGATTGTCTGTGGAGGCGAGGATGGCGCTGTCAAAGTCTGGAACTTC 1680 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TCAGAAGCACTGGAGATTGAGAAGAGGGCACAAGCTCTAAGAAGTATGAGGCAGGAGAAC 1740 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 CGCATGAGGCGAAAAAAGGCACAAGTAGAGATGAATGCAAATGGTAGAAGGTCTGACCAA 1800 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TGTGGCTCAATAGCCATGAAAAGAAACCAACTGAAGGGTGATAAGAGTGTCACTTGGCAC 1860 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 AGCAAGCGTGCCATCAATGATAAGGTCAAGTCTTAGATTAGGATTTGTACCCTTCACAAC 1920 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 TTTACACTCTACAGTAGCCATGAGTTGATAGTTCTTTTCTTGGAAGTACCTTTGCTGATC 1980 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 CCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATT--TTATAAGG 2038 consensus_14073#2 ------------------------------------------CCGGAATT--TTATAAGG 16 consensus_14073#1 ----------------------------------TTCTTTTCTTGGAAGTACCTTTGCTG 26 *** * * * * consensus_14073#0 TTACCAATGCAG--TGTAGCCATGCATGAAATCCGCATATGCAATTCTTA-TTCGATATG 2095 consensus_14073#2 TTACCAATGCAG--TGTAGCCATGCATGAAATCCGCATATTCAATTCTTA-TTCGATATG 73 consensus_14073#1 ATCCCAATTAGGCTTGCTGTTTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAG 86 * ***** * ** * * * * ** **** * ** * * * ** *** * consensus_14073#0 GCATATATTGATCTAACAGAAGCTCTCATTGTCTTACTGTTTTGAGCTCTAGTTGCATTT 2155 consensus_14073#2 GCATATATTGATCTNACAGAAGCTCTCATTGTCTAAAAAAAAAAA--------------- 118 consensus_14073#1 GT---TACCAATGCAGTGTAGCCATGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 143 * ** ** * * *** * * consensus_14073#0 GGGTTTTGTTCGTATCTTTCTGCTGGTAGCTGTTATGAATGGGAATCTACATTGAACTAT 2215 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 164 consensus_14073#0 TCCAGGAATAATAAGCTTCTGTAATTATGTCACTGCTGGATTCTTAGAACATTACTTTTG 2275 consensus_14073#2 ------------------------------------------------------------ consensus_14073#1 ------------------------------------------------------------ consensus_14073#0 CTGTTACGTGGTCTGCAATAAGAAAATCCTGCATTCCGACTCAAAAAAAAAAAAAAAA 2333 consensus_14073#2 ---------------------------------------------------------- consensus_14073#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||