These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1216 fasta sequence [GCGTGCGATCGGAGGCGGCCGGGCTCGATCGATCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGCTGTGAATTGATTCATCATCCCTAACTGGAGTAAACTCTGGTGGTGTTCATATTCGTGCAAAAAAAAAAAGA] [+] EMBL CB661022 [GCGTGCGATCGGAGGCGGCCGGGCTCGATCGATCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGA ] [+] EMBL CA997852 [ atCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTT ] [-] EMBL CB681496 [ CTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGGTGTGAATTGATTCATCATCCCTAACTGGAGTAAAaaaaaga ] [-] EMBL CB669765 [ CTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCAATGAAACCCGGCTCTCTCATGTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTATAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTTTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGATGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATG ] [-] EMBL CB661023 [ TTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTGGGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTGGTCg ] [-] EMBL CB660971 [ TGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTATGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTTTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTTTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGCCAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGCTGTGAATTGATTCATCATCCCTAAGTGGAGTAAACTCTGGTGGTGTTCATATTCGTGCAAAAAAAAAAAGA] [+] EMBL AU068439 [ AGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTAaaaaaaaaa ] [-] EMBL CB642113 [ AGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATGTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGCTGTGAATTGATTCATCATCCCTAACTGGAGTAAACTCTGGTGGTGTTCAaaaaaaaag ] [+] EMBL CF327268 [ gagtagaaaGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCGGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCAaaa ] [-] EMBL CF327267 [ CGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCGGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCAaaaa ] consensusID : consensus_14082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1063 fasta sequence [GGAGGCGGAGGCGGCGGGGAAGGATGGCGGGGAGGAGGTGAGGGAGTACAAGAGCGACGCGAG-GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTCGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGAGTTTGCCTGTGAACCCTAAATTTTTACCTCGAACAGAGGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGACTAACATCGATAAGATGGTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAATTGCTCGACTTGAGCTTCTGGGTGATTATGTGCACTCCACATGCATTCGCGGTTGGTTGAGTTTTGTTCAAGCAGACCTCTGCTATTTCTTGTCTTTGAGGTTGCAGGGGATTGGGCCCTTGAGGCGCTTTCCGTTAGGGGTGAGCCCGATAAAGACACACCGGTCCCGGCCCCGTTCGTCCCGGGTGAAGTGAGACTTGAAACCCGGGTGTTTTATATTTAAGGCATCTGTTCAGGGGCATCAAACACTCTCTTTTATTTTTGTTGTGGCTTAAAAACCCGTTT] [+] EMBL CF324033 [GGAGGCGGAGGCGGCGGGGAAGGATGGCGGGGAGGAGGTGAGGGAGTACAAGAGCGACGCGAG GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTCGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGG ] [+] EMBL AU068440 [ ngnnAGGAGGTGAGGGAGTACAAGANCGACGCGAGNGAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTNGCGCGCCGCCGCGGCGGCGGNAACNGCGCGCGCCGGCTGTCGGCGGACGCGCCCNTNTTCGTGTCCCCCGCGATCGACTTCTACTCGC ] [+] EMBL BE040570 [ GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGACTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTCGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCACGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGAGTTTGCCTGTGAACCCTAAATTTTTACCTCGAACAGAGGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGACTAACATCGATAAGATGGTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAATTGCTCGACTTGAGCTTCTGGGTGATTATGTGCACTCCACATGCATTCGCGGTTGGTTGAGTTTTGTTCAAGCAGACCTCTGCTATTTCTTGTCTTTGAGGTTGCAGGGGATTGGGCCCTTGAGGCGCTTTCCGTTAGGGGTGAGCCCGATAAAGACACACCGGTCCCGGCCCCGTTCGTCCCGGGTGAAGTGAGACTTGAAACCCGGGTGTTTTATATTTAAGGCATCTGTTCAGGGGCATCAAACACTCTCTTTTATTTTTGTTGTGGCTTAAAAACCCGTTT] consensusID : consensus_14082#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [CGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTATCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAATATTTTGCAGAGTAGATTTAAATTCATTTTGGTTAATACTTTATAACACCAGAGTGACAAAGAGTGATTTTGCATTGTAAGTATGGAGCACAACTTTTCTCTATGGTAAATGACTAAATGCAGTTGGGTGCAACCCTAGAGGTATGATTCACTTGAATGCCACTCTAGAACAAGTACAGCAGTTACTTTCGACAGCTGCTTGTTTTAGATTGTGACCTTGCCCGGCCTGAATGGATTGTGACTTAGCACCTAGACAAGACCAACTTGTCACAATAATTTATTATTGGCAAGAGGTAATAGTTTCTGAAAAAAAGGGAGATCACAAGATGAGAAATGGAAGAAACTTGCACGAAAGCAACAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCAAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGCGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTG] [+] EMBL CB681495 [CGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTATCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAATATTTTGCAGAGTAGATTTAAATTCATTTTGGTTAATACTTTATAACACCAGAGTGACAAAGAGTGATTTTGCATTGTAAGTATGGAGCACAACTTTTCTCTATGGTAAATGACTAAATGCAGTTGGGTGCAACCCTAGAGGTATGATTCACTTGAATGCCACTCTAGAACAAGTACAGCAGTTACTTTCGACAGCTGCTTGTTTTAGATTGTGACCTTGCCCGGCCTGAATGGATTGTGACTTAGCACCTAGACAAGACCAACTTGTCACAATAATTTATTATTGGCAAGAGGTAATAGTTTCTGAAAAAAAGGGAGATCACAAGATGAGAAATGGAAGAAACTTGCACGAAAGCAACAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCAAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGCGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTG] consensusID : consensus_14082#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTTGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGGTCCACCAACGGCCAGCCGAATCGTCGGGTAATCGATCGCCTAATCGCGCTGCTGGGTTCGGTGCGATTAGTTTCGCTGTGGGGGGTTTGGCGTAGATTCATTGTGGCATGATCGATCTCTATCGATCGATCGATCGATCGATTGGGATTTGGGGTTTAGGGTGATGTTGTTGTCTTCATTGCCGGAGTTTTGGTCTCTGACGCGATCATTCCAGAATGTTGATTCATGGGCGAGGGGGGTTTAGTTCTAGTTAGGTTATGATATTTATGTGATCAATTTAAGACGAATTTTC] [+] EMBL AK111086 [GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTTGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGGTCCACCAACGGCCAGCCGAATCGTCGGGTAATCGATCGCCTAATCGCGCTGCTGGGTTCGGTGCGATTAGTTTCGCTGTGGGGGGTTTGGCGTAGATTCATTGTGGCATGATCGATCTCTATCGATCGATCGATCGATCGATTGGGATTTGGGGTTTAGGGTGATGTTGTTGTCTTCATTGCCGGAGTTTTGGTCTCTGACGCGATCATTCCAGAATGTTGATTCATGGGCGAGGGGGGTTTAGTTCTAGTTAGGTTATGATATTTATGTGATCAATTTAAGACGAATTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14082#0 ------------------------------------------------------------ consensus_14082#1 ----------------------------------------GGAGGCGGAGGCGGCGGGGA 20 consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 CGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTATCTTCAACCAAGGGAG 60 consensus_14082#0 ------------------------------------------------------------ consensus_14082#1 AGGATGGCGGGGAGGAGGTGAGGGAGTACAAGAGCGACGCGAGGAAGCTGGAGGAGCTGT 80 consensus_14082#3 -------------------------------------------GAAGCTGGAGGAGCTGT 17 consensus_14082#2 GAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGT 120 consensus_14082#0 ------------------------------------------------------------ consensus_14082#1 TCAAGAAGCTGA-ACCCGTCGGCCGAGGAGTT--CGTGCCGCTGGCGCGCCGCCGCGGCG 137 consensus_14082#3 TCAAGAAGCTGA-ACCCGTCGGCCGAGGAGTT--CGTGCCGCTGGCGCGCCGCCGCGGCG 74 consensus_14082#2 CTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAA 180 consensus_14082#0 --------------------------------------------------GCGTGCGATC 10 consensus_14082#1 GCGGGGACGGCGCGC-GCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATC 196 consensus_14082#3 GCGGGGACGGCGCGC-GCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATC 133 consensus_14082#2 TTGCGGACAATATTTTGCAGAGTAGATTTAAATTCATTTTGGTTAATACTTTATAACACC 240 * * consensus_14082#0 GGAGGCGGCCGGGCTCGATCGAT-------CCGCCGCCGATCCAGGTGCTCCCCGTGGTG 63 consensus_14082#1 GACTTCTACTCGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTG 256 consensus_14082#3 GACTTCTACTTGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTG 193 consensus_14082#2 AGAGTGACAAAGAGTGATTTTGCATTGTAAGTATGG--AGCACAACTTTTCTCTATGGTA 298 * * ** * ** * **** consensus_14082#0 G-TGGGCGGTGGCGG--GGGCGC-------GGGATTGGACTCCAGCAGCGACGGATCCAC 113 consensus_14082#1 G-TGGGCGGTGGCGG--GGGCGC-------GGGATTGGACTCCAGCAGCGACGGATCCAC 306 consensus_14082#3 G-TGGGCGGTGGCGG--GGGCGC-------GGGATTGGACTCCAGCAGCGACGGGTCCAC 243 consensus_14082#2 AATGACTAAATGCAGTTGGGTGCAACCCTAGAGGTATGATTCACTTGAATGCCACTCTAG 358 ** ** * *** ** * * * ** ** * ** * consensus_14082#0 CAACGGC-CAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGG 172 consensus_14082#1 CAACGGC-CAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGG 365 consensus_14082#3 CAACGGC-CAGCCGAATCGTCGGGTAATCGATCGCCTAATCGCGCTGCTGGGTTCGGTGC 302 consensus_14082#2 AACAAGTACAGCAGTTACTTTCGACAGCTGCTTGTTTTAGATTGTGACCTTGCCCGGCCT 418 * * **** * * * * * * * * * * * consensus_14082#0 GA---GGCCGACCAAGGCGAACTGATAGGGAGGATAGTGT-GCGGCGAACTGTCTATGT- 227 consensus_14082#1 GA---GGCCGACCAAGGCGAACTGATAGGGAGGATAGTGT-GCGGCGAACTGTCTATGT- 420 consensus_14082#3 GATTAGTTTCGCTGTGGGGGGTTTGGCGTAGATTCATTGT-GGCATGATCGATCTCTATC 361 consensus_14082#2 GAATGGATTGTGACTTAGCACCTAGACAAGACCAACTTGTCACAATAATTTATTATTGGC 478 ** * * *** * * * consensus_14082#0 -------ATCTGAC-ATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCA 279 consensus_14082#1 -------ATCTGAC-ATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCA 472 consensus_14082#3 G------ATCGATCGATCGATCGATTGGGATTTGGGGTTTAGGGTGATGTTGTTGTCTTC 415 consensus_14082#2 AAGAGGTAATAGTTTCTGAAAAAAAGGGAGATCACAAGATGAGAAATGGAAGAAACTTGC 538 * * * * * * * consensus_14082#0 AATTGCGGACAAGTGGTAGATTGC-CGTATATGTGGTGACCCAAATTCAGTGCTGCGTTT 338 consensus_14082#1 AATTGCGGACAAGTGGTAGATTGC-CGTATATGTGGTGACCCAAATTCAGTGCTGCGTTT 531 consensus_14082#3 ATTGCCGGAGTTTTGGTCTCTGACGCGATCATTCCAGAATGTTGATTCATGGGCGAGGGG 475 consensus_14082#2 ACGAAAGCAACAGTGGTAGATTGC-CGTATATGTGGTGACCCAAATTCAGTGCTGCGTTT 597 * * * **** * * ** ** * ***** * * * consensus_14082#0 TGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAAC 398 consensus_14082#1 TGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAAC 591 consensus_14082#3 GGTTTAGTTCTAGTTAGGTTATGATATTTATGT--GATCAA-TTTAAGACGAATTTTC-- 530 consensus_14082#2 TGCCTTTATCAAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAAC 657 * * ** **** * ***** ** ** ** ** ***** ** * consensus_14082#0 CGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAA 458 consensus_14082#1 CGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGAGTTTGCCTGTGAA 651 consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 CGCGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTG-------- 709 consensus_14082#0 CCCTAAATTTTTACCTCGAACAGAGG-ACGAGAAAGAAATGGTGTCAAGGACTGTGTATT 517 consensus_14082#1 CCCTAAATTTTTACCTCGAACAGAGGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATT 711 consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 GTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGT 577 consensus_14082#1 G-ACTAACATCGATAAGA-TGGTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGT 769 consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 GTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCAT-CGCG 636 consensus_14082#1 GTGGTGAAATTGCTCGACTTGAGCTTCTGGGTGATTATGTGCACTCCACATGCATTCGCG 829 consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 TTTG-TTGAGTTT-GTTCAAGCAGAC-TCTGCTATT-CTTG-CTCTGAG-TTGCAGTGGC 690 consensus_14082#1 GTTGGTTGAGTTTTGTTCAAGCAGACCTCTGCTATTTCTTGTCTTTGAGGTTGCAGGGGA 889 consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 ATGG-TCCTTGGAGCGCTTCCCGTCAGGG-TGAGCCCGTCAAAGACAC--CGGTCC-GGC 745 consensus_14082#1 TTGGGCCCTTGAGGCGCTTTCCGTTAGGGGTGAGCCCGATAAAGACACACCGGTCCCGGC 949 consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 CCCGTTCGCCCCGTGTGACGTCGCACT-GAAACCCGGCTCTCTCAT-CTGAAGCCATC-G 802 consensus_14082#1 CCCGTTCGTCCCGGGTGAAGTGAGACTTGAAACCCGGGTGTTTTATATTTAAGGCATCTG 1009 consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 TCCAGGG-CAGCAAAGCCTCCTCTCTAGTCTG--TGTGGCCTTAGAGACCGTCTGTCGCG 859 consensus_14082#1 TTCAGGGGCATCAAACACTCTCTTTTATTTTTGTTGTGGCTTAAAAACCCGTTT------ 1063 consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 TCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTA 919 consensus_14082#1 ------------------------------------------------------------ consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 GCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGT 979 consensus_14082#1 ------------------------------------------------------------ consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 ATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATC 1039 consensus_14082#1 ------------------------------------------------------------ consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 ACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCAT 1099 consensus_14082#1 ------------------------------------------------------------ consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 TGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGCTGTGAATTGATTCA 1159 consensus_14082#1 ------------------------------------------------------------ consensus_14082#3 ------------------------------------------------------------ consensus_14082#2 ------------------------------------------------------------ consensus_14082#0 TCATCCCTAACTGGAGTAAACTCTGGTGGTGTTCATATTCGTGCAAAAAAAAAAAGA 1216 consensus_14082#1 --------------------------------------------------------- consensus_14082#3 --------------------------------------------------------- consensus_14082#2 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||