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Oryza sativa
cluster # 14117 cluster # 14117       Sequences # 15       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14117#0 length = 1059 sequences # 9  
consensus_14117#1 length = 519 sequences # 5  
consensus_14117#2 length = 342 sequences # 1  

consensusID : consensus_14117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1059
fasta sequence
                              [ATGGACTGAAGGAGTAGAAA-----ACTGCTCCCCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATG-TCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCGGGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACGATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATGTCGTTGCTGAAAAGATTGGATTTTCCTGAGATGAAATTCAGCTTGTATTTTCTTGGTTATGAGGATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTT-GGGGTA-GAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAACCGTTTCTGCGTTAAAGATTTTGGCCTCATACCGCTGCTGGCCTCTCTCTCCCCCTCCCTCCCTCTCTCTGGGGTACTTGTATTACCTATACTTGGTTGCTTGGATTGGTCCCCCTTTTTTTTTTTTTGACAAATTGATCCTTTTCAAAA]

[+] EMBL CF335378             [ATGGACTGAAGGAGTAGAAAGCTTCACTGCTCCCCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATG TCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCGGGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACGATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATGTCGTTGCTGAAAAGATTGGATTTTCCTGAGATGAAATTCAGCTTGTATTTTCTTGGTTATGAGGATGTGGAGTCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTCCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTTGGGGGTA GAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATATTT                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF333691             [           GAGTAGAAAGCTTCACTGCTCCCCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCC TGNTCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCGGGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACGATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATGTCGTTGCTGAAAAGATTGGATTTTCCTGAGATGAAATTCAGCTTGTATTTTCTTGGTT TGAGGATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGGCTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTT GGGGTANAAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATA                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF335087             [           GAGTAGAAA     ACTGCTCCCCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATG TCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCGGGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACGATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATGTCGTTGCTGAAAAGATTGGATTTTCCTGAGATGAAATTCAGCTTGTATTTTCTTGGTTATGAGGATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGAAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTT GNGGTA GAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATA                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK070232             [                            GCTCCCCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATG TCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCGGGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACGATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATGTCGTTGCTGAAAAGATTGGATTTTCCTGAGATGAAATTCAGCTTGTATTTTCTTGGTTATGAGGATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTT GGGGTA GAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAACCGTTTCTGCGTTAAAGATTTTGGCCTCATACCGCTGCTGGCCTCTCTCTCCCCCTCCCTCCCTCTCTCTGGGGTACTTGTATTACCTATACTTGGTTGCTTGGATTGGTCCCCCTTTTTTTTTTTTTGACAAATTGATCCTTTTCAAAA]
[+] EMBL CF332805             [                                 CCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATG TCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCGGGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACGATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATGTCGTTGCTGAAAAGATTGGATTTTCCTGAGATGAAATTCAGCTTGTATTTTCTTGGTTATGAGGATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTTGGGGGTA GAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGC                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA756642             [                                           CTTCGCTCTCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATG TCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCGGGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACGATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATGTCGTTGCTGAAAAGATTGGATTTTCCTGAGATGAAATTCAGCTTGTATTTTCTTGGTTATGAGGATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGACCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGATGTCTATTAGGCGTGTGAGCGGTTCGAACGTCTT GGGGTA GAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCANAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATTG                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU063064             [                                                                      GGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATG TCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCGGGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACGATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATGTCGTTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CF332806             [                                                                                                                                                                                                                                                                                                                                                                                                                           TGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTT GGGGTA GAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAACCGTTTCTGCGTTAAAGATTTTGGCCTCATACCaaaaaa                                                                                                               ]
[-] EMBL CF335377             [                                                                                                                                                                                                                                                                                                                                                                                                                              ACTTTTGGGCAAAGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTCCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTT GGGGTA GAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAACCGTTTTTGCGTTAAAGATTTTGGCCTCATACCGCTGCTGGCCTCTCTCTCCaaaaaaaa                                                                                          ]


>consensus_14117#0 ATGGACTGAAGGAGTAGAAAACTGCTCCCCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCC TCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTC GCGCCGGCCGCCGCCATGTCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCG GGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACG ATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATG TCGTTGCTGAAAAGATTGGATTTTCCTGAGATGAAATTCAGCTTGTATTTTCTTGGTTAT GAGGATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAA AGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGT TACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGAT GTCTATAAGGCGTGTGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGAT GATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATA TTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCT ATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGA GACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAA CAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATT GCACTGTAACCGTTTCTGCGTTAAAGATTTTGGCCTCATACCGCTGCTGGCCTCTCTCTC CCCCTCCCTCCCTCTCTCTGGGGTACTTGTATTACCTATACTTGGTTGCTTGGATTGGTC CCCCTTTTTTTTTTTTTGACAAATTGATCCTTTTCAAAA



consensusID : consensus_14117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 519
fasta sequence
                              [TCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAA-CCGTTTCTGCGTTAAAGATTTTGGCCTCATACCAAAAAAAAAAAAA]

[-] EMBL CF333692             [TCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAA CCGTTTCTGCGTTAAAGATTTTGGCCTCATACCAAAAAAAAAA   ]
[+] EMBL BI795104             [                                                    TGGGAACTCAGA CCTCGT GTTTT GTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGA CGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAA GGCATTGCATTTATC AAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATT GGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGC ACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAAC TTGCACTGTAA CCGTTTCTGCGTTAAAGATTTTGGCCTCATACCAAAAAAAA     ]
[+] EMBL AU069224             [                                                                                                                                                                                                 CAAAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAACCCGTTTCTGCGTTA                                ]
[+] EMBL C97903               [                                                                                                                                                                                                                                              AATTNGGGCGGTGACTNCGGNAG ATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAA CCGTTTCTGCGTTAAAGATT                          ]
[+] EMBL C97904               [                                                                                                                                                                                                                                               ATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACNGGTGCGACGTGCGAGACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAA CCGTTTCTGCGTTAAAGATTTTGGCCTCAAAAAAAAAAAAAAAAAA]


>consensus_14117#1 TCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACT CAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTG AGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGGTAAAATGAAGG GCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATATTTGACCTGAACAGAA TTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATG CAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAG CTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAACAAGTTATAGATTGTG ATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAACCGTTTC TGCGTTAAAGATTTTGGCCTCATACCAAAAAAAAAAAAA



consensusID : consensus_14117#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence
                              [CTACTGGATTGAAATATTTGACCTGAACAGAATTGGGNCGGTGACTNCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTNCCCNTGGGCATATATACAATATACTTGGTCGTTTAGNGCNACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAACCNTTTCTGCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAA]

[+] EMBL AU069225             [CTACTGGATTGAAATATTTGACCTGAACAGAATTGGGNCGGTGACTNCGGAAGCATCATGATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGAGACGATAAAACTCCAGCTNCCCNTGGGCATATATACAATATACTTGGTCGTTTAGNGCNACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATTGCACTGTAACCNTTTCTGCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAA]


>consensus_14117#2 CTACTGGATTGAAATATTTGACCTGAACAGAATTGGGNCGGTGACTNCGGAAGCATCATG ATGTGTTTGAAATGCTATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGA CAGGTGCGACGTGCGAGACGATAAAACTCCAGCTNCCCNTGGGCATATATACAATATACT TGGTCGTTTAGNGCNACAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAA GCTTGAACTTAACATTGCACTGTAACCNTTTCTGCGTTAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14117#0      ATGGACTGAAGGAGTAGAAAACTGCTCCCCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCC 60
consensus_14117#1      ------------------------------------------------------------
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      TCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGAGATTCGACCGGGCTCGCCGGTTC 120
consensus_14117#1      ------------------------------------------------------------
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      GCGCCGGCCGCCGCCATGTCGACGTCGTCGGGGCCGAAGGAGGCGCCGGCAAACAACCCG 180
consensus_14117#1      ------------------------------------------------------------
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      GGCCTCCAGGCGCCGTCGGAGAAGGACCCCGCGACCAAGGGCTACTTCATGCAGCAGACG 240
consensus_14117#1      ------------------------------------------------------------
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      ATGTTCCGTGTAAAGGATCCAAAAGTGAGTCTCGACTTCTACTCGCGTGTGATGGGCATG 300
consensus_14117#1      ------------------------------------------------------------
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      TCGTTGCTGAAAAGATTGGATTTTCCTGAGATGAAATTCAGCTTGTATTTTCTTGGTTAT 360
consensus_14117#1      ------------------------------------------------------------
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      GAGGATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAA 420
consensus_14117#1      ------------------------------------------------------------
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      AGGGCTACACTTGAGCTCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGT 480
consensus_14117#1      ----------------TCACACACAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGT 44
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      TACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGAT 540
consensus_14117#1      TACCATAATGGGAACTCAGACCCTCGTGGTTTTGGTCATATAGGAGTAACTGTTCACGAT 104
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      GTCTATAAGGCGTGTGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGAT 600
consensus_14117#1      GTCTATAAGGCGTGTGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGAT 164
consensus_14117#2      ------------------------------------------------------------
                                                                                   

consensus_14117#0      GATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATA 660
consensus_14117#1      GATGGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGAAATA 224
consensus_14117#2      --------------------------------------------CTACTGGATTGAAATA 16
                                                                   ****************

consensus_14117#0      TTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCT 720
consensus_14117#1      TTTGACCTGAACAGAATTGGGGCGGTGACTGCGGAAGCATCATGATGTGTTTGAAATGCT 284
consensus_14117#2      TTTGACCTGAACAGAATTGGGNCGGTGACTNCGGAAGCATCATGATGTGTTTGAAATGCT 76
                       ********************* ******** *****************************

consensus_14117#0      ATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGA 780
consensus_14117#1      ATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGA 344
consensus_14117#2      ATGAACTCTAGTTATGCAGCTGGGGTAAATCATTTCCTTGTTGACAGGTGCGACGTGCGA 136
                       ************************************************************

consensus_14117#0      GACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAA 840
consensus_14117#1      GACGATAAAACTCCAGCTACCCATGGGCATATATACAATATACTTGGTCGTTTAGAGCAA 404
consensus_14117#2      GACGATAAAACTCCAGCTNCCCNTGGGCATATATACAATATACTTGGTCGTTTAGNGCNA 196
                       ****************** *** ******************************** ** *

consensus_14117#0      CAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATT 900
consensus_14117#1      CAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATT 464
consensus_14117#2      CAAGTTATAGATTGTGATACCCTGTTTGCTGGTCAGTGTTTGAAGCTTGAACTTAACATT 256
                       ************************************************************

consensus_14117#0      GCACTGTAACCGTTTCTGCGTTAAAGATTTTGGCCTCATACCGCTGCTGGCCTCTCTCTC 960
consensus_14117#1      GCACTGTAACCGTTTCTGCGTTAAAGATTTTGGCCTCATACCAAAAAAAAAAAAA----- 519
consensus_14117#2      GCACTGTAACCNTTTCTGCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 316
                       *********** ************* *          * *                    

consensus_14117#0      CCCCTCCCTCCCTCTCTCTGGGGTACTTGTATTACCTATACTTGGTTGCTTGGATTGGTC 1020
consensus_14117#1      ------------------------------------------------------------
consensus_14117#2      AAAAAAAAAAAAAAAAAAAAAANNAA---------------------------------- 342
                                                                                   

consensus_14117#0      CCCCTTTTTTTTTTTTTGACAAATTGATCCTTTTCAAAA 1059
consensus_14117#1      ---------------------------------------
consensus_14117#2      ---------------------------------------
                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)