These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2675 fasta sequence [GGGCTAGAGAACCCTCCACCCCAAATAGCCACAGCCAAGAAACATCTAGGGTTGGAGGGAGTCCAGTCCACCACCACCAGGCGCGCCTCCAGTGCTCCCTGCTGTCCACGCCGGCGCCGCGCCTCCCCACCGTCCCCGCCGCCGTCCGCTCCGTCCCCACCGTCCAAGCCGCCAAGCCGGGGGCCGCGACGGAGCGACTCCTCGGGTCGCCGCCTCGCCGGTTGCGGGTTGCCGGCTTGGTGGCTTGGCGCGGCGCCTTCTCCAGTTCTCTTGCTTGGCAACTGATCCGGCGCTCCACCATTCAACCGACCCCTGTTGAGGTAAGGTGAGGTGAGGTGAGGTG-AGGATGGCGATGATGAACCGGACGCGGGATCTGCTGATGGAGGGGTTCGAGGGCCTCGTGCGGGAGGGCTCCTTCAGCTGGGCCCTCCCCCGCCGCGGGGCTTCGCCGGTGGACGACGCCGATGACCCCGACAGCTCCTCCTCCTCCTCCTCCGGCAAGCAGCCCTCCATCTCCGGCCTCTCCCCCAAGGCCAACGCCGTCGTCTCTCGCTGCTCCCGGGTACTTGGTACTTCCACGGATGAGCTGCAGTATGACTTTGATATGCAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGAATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAAAAGCTTTCGTCGCCTAAATTTTGATATGATGCTAGCTTGGGAAGTTCCCTCTTCTTCAAGCGAGCTCACTGTTAAGGTTGAAGTAGACAACACAGTCAGTTTAGAGGCTTTTTCAAGAATAGCACCTGCAATTCCAACAATCACTGATGTGGTAACATGTTCAAATCTATTTGATGTACTTTCATCTTCAAGTGGAGGCCGGCTTACATTTCCTGTATATGATAAGTACCTTACAGGATTGGACAGAGCAATTAAGAAAATGAAAGGACAATCTGAGTCCTCGCTTTTATCTGCCCAGCGGTCTCAGAGAGGAGAAAGGATTGTAGAAGTAGATGGAACATTGACGACTCAACCAGTACTTGAACATGTTGGGATTTCGACATGGCCAGGAAGGTTAACACTTACTGATCATGCTCTTTACTTCGAAGCACTTCGGGTTGTGACCTATGATAAGCCTAAAGCTTATGAGCTTGCCGAAGATCTAAAGCAGTCTGTTAAACCTGAGCTGACTGGTCCATGGGGCTCACGGCTATTTGACAAAGCTGTTATGTATAAATCAACAACTTTAACAGAACCAGTGATCATAGAATTTCCAGAGTTGGCTGGCCACTTTCGTCGTGACTATTGGCTGGCCATCATATCAGAAATTCTCTATGTCCACAGATTTGTTAGGAAGTTTGACATAAGTGGAGTTGACAAAGAGGAAACAATTTTGAAGGCTGTACTAAGCATTATGCGGCTACAAGCTATTGAAGAGTTAGCCATTCCAGTTTCTAATCGATTCGAGTCTCTTTTGATGTTTAATCTATGTGACAAACTTCCCGGAGGTGATGTAATACTTGAAACACTAGCTGGTTCTATATCATCGAGAAGATCAACTCAAGTTAACCAACCTGGCACTAGCAGTGGAAGGCATTCAATGTCCCCCTTTACTGTTCTGTCGAATCTTGGAGTGGTATCACCAATTAATAAAGGTGAGAGACTCTTTGTTGGCGAGATAGTTGTTGGGGAAATGAGTGCCTTGCAGAAGGTAGTTAATGAGTCAATGAACAACTATAAGAAGGTTGAATTGGCCCAAGCCACAGTTGATGGAGTCAAAGTTGATGGCCTGGATACAAACTTGGCAGTGATGAAGGAATTGCTATCTCCCGTAAGTGAGCTATGGAGGTTTTTGGTGTTGCTGGCATCTTGGGATGAGCCAATTAAGTCCATGGTATTTTGCTTTTCATCGTCTTATATCATTATCAGGGGGTGGTTAGTCTATTTTCTTGTTTTGGTGCTCTTGTTTTCGGCAGCTTTCATGTTCCTTACAAGACTAACTAGCCATGGAAAACCAATGACGGAGGTCAAAGTGACATCTCCACCTCCAATGAACACAATGGAGCAGCTCTTAGCTGTTCAAAATGCTATTTCCAAAGTTGAAGAGCTTGTTCAGGATGCAAATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGATAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGAGCCTTGCATTCGTGCCCACAAGGTTGCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAGCACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGTAGTCGTGGAGAAGGATAAAGAAGACAAGAAAACAAAATAAAAGATATATATGTATATTCAATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTCTTGTACAGTAGCAGCTAGTATTTTTCAATAAAAATGCGAGTTCTCACCTAGAATTAATTGCTTGCCTCGTACTTTGATTATTTCGTATATAGTTTCATCGGGTGATCGGGAATGTTGGACAACACCCCAGGTTTATGTGATTTTAGCTGAATTTCTTAC] [+] EMBL AU166451 [GGGCTAGAGAACCCTCCACCCCAAATAGCCACAGCCAAGAAACATCTAGGGTTGGAGGGAGTCCAGTCCACCACCACCAGGCGCGCCTCCAGTGCTCCCTGCTGTCCACGCCGGCGCCGCGCCTCCCCACCGTCCCCGCCGCCGTCCGCTCCGTCCCCACCGTCCAAGCCGCCAAGCCGGGGGCCGCGACGGAGCGACTCCTCGGGTCGCCGCCTCGCCGGTTGCGGGTTGCCGGCTTGGTGGCTTGGCGCGGCGCCTTCTCCAGTTCTCTTGCTTGGCAACTGATCCGGCGCTCCACCATTCAACCGACCCCTGTTGAGGTAAGGTGAGGTGAGGTGAGGTGAAGGATGGCNATGATGAACCGGACGCGGGATCTGCTGATGGAGGGGTTCGAGGGCCTCGTGCGGGAGGGCTCCTTCAGC ] [+] EMBL CB669260 [ AAATAGCCACAGCCAAGAAACATCTAGGGTTGGAGGGAGTCCAGTCCACCACCACCAGGCGCGCCTCCAGTGCTCCCTGCTGTCCACGCCGGCGCCGCGCCTCCCCACCGTCCCCGCCGCCGTCCGCTCCGTCCCCACCGTCCAAGCCGCCAAGCCGGGGGCCGCGACGGAGCGACTCCTCGGGTCGCCGCCTCGCCGGTTGCGGGTTGCCGGCTTGGTGGCTTGGCGCGGCGCCTTCTCCAGTTCTCTTGCTTGGCAACTGATCCGGCGCTCCACCATTCAACCGACCCCTGTTGAGGTAAGGTGAGGTGAGGTGAGGTG AGGATGGCGATGATGAACCGGACGCGGGATCTGCTGATGGAGGGGTTCGAGGGCCTCGTGCGGGAGGGCTCCTTCAGCTGGGCCCTCCCCCGCCGCGGGGCTTCGCCGGTGGACGACGCCGATGACCCCGACAGCTCCTCCTCCTCCTCCTCCGGCAAGCAGCCCTCCATCTCCGGCCTCTCCCCCAAGGCCAACGCCGTCGTCTCTCGCTGCTCCCGGGTACTTGGTACTTCCACGGATGAGCTGCAGTATGACTTTGATATGCAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGAATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAATAGCTTTCGTCGCCTAAATTT ] [+] EMBL AK072882 [ TCCAGTCCACCACCACCAGGCGCGCCTCCAGTGCTCCCTGCTGTCCACGCCGGCGCCGCGCCTCCCCACCGTCCCCGCCGCCGTCCGCTCCGTCCCCACCGTCCAAGCCGCCAAGCCGGGGGCCGCGACGGAGCGACTCCTCGGGTCGCCGCCTCGCCGGTTGCGGGTTGCCGGCTTGGTGGCTTGGCGCGGCGCCTTCTCCAGTTCTCTTGCTTGGCAACTGATCCGGCGCTCCACCATTCAACCGACCCCTGTTGAGGTAAGGTGAGGTGAGGTGAGGTG AGGATGGCGATGATGAACCGGACGCGGGATCTGCTGATGGAGGGGTTCGAGGGCCTCGTGCGGGAGGGCTCCTTCAGCTGGGCCCTCCCCCGCCGCGGGGCTTCGCCGGTGGACGACGCCGATGACCCCGACAGCTCCTCCTCCTCCTCCTCCGGCAAGCAGCCCTCCATCTCCGGCCTCTCCCCCAAGGCCAACGCCGTCGTCTCTCGCTGCTCCCGGGTACTTGGTACTTCCACGGATGAGCTGCAGTATGACTTTGATATGCAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGAATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAAAAGCTTTCGTCGCCTAAATTTTGATATGATGCTAGCTTGGGAAGTTCCCTCTTCTTCAAGCGAGCTCACTGTTAAGGTTGAAGTAGACAACACAGTCAGTTTAGAGGCTTTTTCAAGAATAGCACCTGCAATTCCAACAATCACTGATGTGGTAACATGTTCAAATCTATTTGATGTACTTTCATCTTCAAGTGGAGGCCGGCTTACATTTCCTGTATATGATAAGTACCTTACAGGATTGGACAGAGCAATTAAGAAAATGAAAGGACAATCTGAGTCCTCGCTTTTATCTGCCCAGCGGTCTCAGAGAGGAGAAAGGATTGTAGAAGTAGATGGAACATTGACGACTCAACCAGTACTTGAACATGTTGGGATTTCGACATGGCCAGGAAGGTTAACACTTACTGATCATGCTCTTTACTTCGAAGCACTTCGGGTTGTGACCTATGATAAGCCTAAAGCTTATGAGCTTGCCGAAGATCTAAAGCAGTCTGTTAAACCTGAGCTGACTGGTCCATGGGGCTCACGGCTATTTGACAAAGCTGTTATGTATAAATCAACAACTTTAACAGAACCAGTGATCATAGAATTTCCAGAGTTGGCTGGCCACTTTCGTCGTGACTATTGGCTGGCCATCATATCAGAAATTCTCTATGTCCACAGATTTGTTAGGAAGTTTGACATAAGTGGAGTTGACAAAGAGGAAACAATTTTGAAGGCTGTACTAAGCATTATGCGGCTACAAGCTATTGAAGAGTTAGCCATTCCAGTTTCTAATCGATTCGAGTCTCTTTTGATGTTTAATCTATGTGACAAACTTCCCGGAGGTGATGTAATACTTGAAACACTAGCTGGTTCTATATCATCGAGAAGATCAACTCAAGTTAACCAACCTGGCACTAGCAGTGGAAGGCATTCAATGTCCCCCTTTACTGTTCTGTCGAATCTTGGAGTGGTATCACCAATTAATAAAGGTGAGAGACTCTTTGTTGGCGAGATAGTTGTTGGGGAAATGAGTGCCTTGCAGAAGGTAGTTAATGAGTCAATGAACAACTATAAGAAGGTTGAATTGGCCCAAGCCACAGTTGATGGAGTCAAAGTTGATGGCCTGGATACAAACTTGGCAGTGATGAAGGAATTGCTATCTCCCGTAAGTGAGCTATGGAGGTTTTTGGTGTTGCTGGCATCTTGGGATGAGCCAATTAAGTCCATGGTATTTTGCTTTTCATCGTCTTATATCATTATCAGGGGGTGGTTAGTCTATTTTCTTGTTTTGGTGCTCTTGTTTTCGGCAGCTTTCATGTTCCTTACAAGACTAACTAGCCATGGAAAACCAATGACGGAGGTCAAAGTGACATCTCCACCTCCAATGAACACAATGGAGCAGCTCTTAGCTGTTCAAAATGCTATTTCCAAAGTTGAAGAGCTTGTTCAGGATGCAAATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGATAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGAGCCTTGCATTCGTGCCCACAAGGTTGCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAGCACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGTAGTCGTGGAGAAGGATAAAGAAGACAAGAAAACAAAATAAAAGATATATATGTATATTCAATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTCTTGTACAGTAGCAGCTAGTATTTTTCAATAAAAATGCGAGTTCTCACCTAGAATTAATTGCTTGCCTCGTACTTTGATTATTTCGTATATAGTTTCATCGGGTGATCGGGAATGTTGGACAACACCCCAGGTTTATGTGATTTTAGCTGAATTTCTTAC] [+] EMBL CB622500 [ TGCTTGGCAACTGATCCGGCGCTCCACCATTCAACCGACCCCTGTTGAGGTAAGGTGAGGTGAGGTGAGGTG AGGATGGCGATGATGAACCGGACGCGGGATCTGCTGATGGAGGGGTTCGAGGGCCTCGTGCGGGAGGGCTCCTTCAGCTGGGCCCTCCCCCGCCGCGGGGCTTCGCCGGTGGACGACGCCGATGACCCCGACAGCTCCTCCTCCTCCTCCTCCGGCAAGCAGCCCTCCATCTCCGGCCTCTCCCCCAAGGCCAACGCCGTCGTCTCTCGCTGCTCCCGGGTACTTGGTACTTCCACGGATGAGCTGCAATATGACTTTGATATACAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGAATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAAAAGCTTTCGTCGCCTAAATTTTGATATGATGCTAGCTTGGGAAGTTCCCTCTTCTTCAAGCGAGCTCACTGTTAAGGTTGAAGTAGACAACACAGTCAGTTTAGAGGCTTTTTCAAGAATAGCACCTGCAATTCCAACAATCACTGATGTGGTAACATGTTCAAATCTATTTGATGTACTTTCATCTTCAAGTGGAGGCCGGCTTACATTTCCTGTATATGATAAGTACCTTACAGGATTGGACAGAGCAATTAAGAAAATGAAAGGACAATCTGAGTCCTCGCTTTTATCTGCCCAGCGGTCTCACAGAGGAGAAAGGATTGTAGAAGTAGATGGAACATTGACGACTCAACCAGTACTTGAACATGTTGGGATTTCGACATGGCCAGGAAAGGTAACACTTACT ] [+] EMBL CB622554 [ TGCTTGGCCTTTGATCCGGCGCTCCACCATTCAACCGACCCCTGTTGAGGTAAGGTGAGGTGAGGTGAGGTG AGGATGGCGATGATGAACCGGACGCGGGATCTGCTGATGGAGGGGTTCGAGGGCCTCGTGCGGGAGGGCTCCTTCAGCTGGGCCCTCCCCCGCCGCGGGGCTTCGCCGGTGGACGACGCCGATGACCCCGACAGCTCCTCCTCCTCCTCCTCCGGCAAGCAGCCCTCCATCTCCGGCCTCTCCCCCAAGGCCAACGCCGTCGTCTCTCGCTGCTCCCGGGTACTTGGTACTTCCACGGATGAGCTGCAATATGACTTTGATATACAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGAATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAAAAGCTTTCGTCGCCTAAATTTTGATATGATGCTAGCTTGGGAAGTTCCCTCTTCTTCAAGCGAGCTCACTGTTAAGGTTGAAGTAGACAACACAGTCAGTTTAGAGGCTTTTTCAAGAATAGCACCTGCAATTCCAACAATCACTGATGTGGTAACATGTTCAAATCTATTTGATGTACTTTCATCTTCAAGTGGAGGCCGGCTTACATTTCCTGTATATGATAAGTACCTTACAGGATTGGACAGAGCAATTAAGAAAATGAAAGGACAATCTGAGTCCTCGCTTTTATCTGCCCAGCGGTCTCAGAGAGGAGAAAGGATTGTAGAAGTAGATGGAACATTGACGACTGCACCAGTACTTGAACATGTTGGGATT ] [+] EMBL CF306637 [ TCAGCTGGGCCCTCCCCCGCCGCGGGGCTTCGCCGGTGGACGACGCCGATGACCCCGACAGCTCCTCCTCCTCCTCCTCCGGCAAGCAGCCCTCCATCTCCGGCCTCTCCCCCAAGGCCAACGCCGTCGTCTCTCGCTGCTCCCGGGTACTTGGTACTTCCACGGATGAGCTGCAGTATGACTTTGATATGCAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGAATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAAAAGCTTTCGTCGCCTAAATTTTGATATGATGCTAGCTTGGGAAGTTCCCTCTTCTTCAAGCGAGCTCACTGTTAAGGTTGAAGTAGACAACACAGTCAGTTTAGAGGCTTTTTCAAGAATAGCACCTGCAATTCCAACAATCACTGATGTGGTAACATGTTCAAATCTATTTGATGTACTTTCATCTTCAAGTGGAGGCCGGCTTACATTTCCTGTATATGATAAGTACCTTACAGGATTGGACAGAGCAATTAAGAAAATGAAAGGACAATCTGAGTCCTCGCTTTTATCTGCC ] [+] EMBL CB635380 [ TGACCCTTACAGCTCCTCCTCCTCCTCCTCCGGCAAGCAGCCCTCCATCTCCGGCCTCTCCCCCAAGGCCAACGCCGTCGTCTCTCGCTGCTCCCGGGTACTTGGTACTTCCACGGATGAGCTGCAATATGACTTTGATATACAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGAATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAAAAGCTTTCGTCGCCTAAATTTTGATATGATGCTAGCTTGGGAAGTTCCCTCTTCTTCAAGCGAGCTCACTGTTAAGGTTGAAGTAGACAACACAGTCAGTTTAGAGGCTTTTTCAAGAATAGCACCTGCAATTCCAACAATCACTGATGTGGTAACATGTTCAAATCTATTTGATGTACTTTCATCTTCAAGTGGAGGCCGGCTTACATTTCCTGTATATGATAAGTACCTTACAGGATTGGACAGAGCAATTAAGAAAATGAAAGGACAATCTGAGTCCTCGCTTTTATCTGCCCAGCGGTCTCAGAGAGGAGAAAGGATTGTAGAAGTAGATGGAACATTGACGACTCAACCAGTACTTGAACATGTTGGGATTTCGACATGGCCAGGAAGGTTAACACTTACTGATCATGCTCTTTACTTCGAAGCACTTCGGGTTGTGACCTATGATAAGCCTAAAGCTTATGAGCTTGCCGAAGATCTAAAGCAGTCTGTTAAACCTGAGCTGACTGGTCCATGGGGCTCACGGCTATTTGACAAAG ] [+] EMBL CB676191 [ CCTCCTCCTCCTCCTCCGGCAAGCAGCCCTCCATCTCCGGCCTCTCCCCCAAGGCCAACGCCGTCGTCTCTCGCTGCTCCCGGGTACTTGGTACTTCCACGGATGAGCTGCAGTATGACTTTGATATGCAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGAATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAAAAGCTTTCGTCGCCTAAATTTTGATATGATGCTAGCTTGGGAAGTTCCCTCTTCTTCAAGCGAGCTCACTGTTAAGGTTGAAGTAGACAACACAGTCAGTTTAGAGGCTTTTTCAAGAATAGCACCTGCAATTCCAACAATCACTGATGTGGTAACATGTTCAAATCTATTTGATGTACTTTCATCTTCAAGTGGAGGCCGGCTTACATTTCCTGTATATGATAAGTACCTTACAGGATTGGACAGAGCAATTAAGAAAATGAAAGGACAATCTGAGTCCTCGCTTTTATCTGCCCAGCGGTCTCAGAGAGGAGAAAGGATTGTAGAAGTAGATGGAACATTGACGACTCAACCAGTACTTGAACATGTTGGGATTTCGACATGGCCAGGAAGGTTAACACTTACTGATCATGCTCTTTACTTCGAAGCACTTCGGGTTGTGACCTATGATAAGCCTAAAGCTTATGAGCTTGCCGAAGATCTAAAGCAGTCTGTTAAACCTGAGCTGACTGGTCCATGGGGCT ] [+] EMBL CF305003 [ TTCCACGGATGAGCTGCAGTATGACTTTGATATGCAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGAATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAAAAGCTTTCGTCGCCTAAATTTTGATATGATGCTAGCTTGGGAAGTTCCCTCTTCTTCAAGCGAGCTCACTGTTAAGGTTGAAGTAGACAACACAGTCAGTTTAGAGGCTTTTTCAAGAATAGCACCTGCAATTCCAACAATCACTGATGTGGTAACATGTTCAAATCTATTTGATGTACTTTCATCTTCAAGTGGAGGCCGGCTTACATTTCCTGTATATGATAAGTACCTTACAGGATTGGACAGAGCAATTAAGAAAATGAAAGGACAATCTGAGTCCTCGCTTTTATCTGCCCAGCGGTCTCAGAGAGGAGAAAGGATTGTAGAAGTAGATGGAACATTGACGACTCAACCAGTACTTGAACATGTTGGGATTTCGACATGGCCAGGAAGGTTAACACTTACTGATCAT ] [-] EMBL CB622555 [ AGTTAATGAGTCAATGAACAACTATAAGAAGGTTGAATTGGCCCAAGCCACAGTTGATGGAGTCAAAGTTGATGGCCTGGATACAAACTTGGCAGTGATGAAGGAATTGCTATCTCCCGTAAGTGAGCTATGGAGGTTTTTGGTGTTGCTGGCATCTTGGGATGAGCCAATTAAGTCCATGGTATTTTGCTTTTCATCGTCTTATATCATTATCAGGGGGTGGTTAGTCTATTTTCTTGTTTTGGTGCTCTTGTTTTCGGCAGCTTTCATGTTCCTTACAAGACTAACTAGCCATGGAAAACCAATGACGGAGGTCAAAGTGACATCTCCACCTCCAATGAACACAATGGAGCAGCTCTTAGCTGTTCAAAATGCTATTTCCAAAGTTGAAGAGCTTGTTCAGGATGCAAATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGATAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGAGCCTTGCATTCGTGCCCACAAGGTTGCTTGTCTTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAGCACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGTAGTCGTGGAGAAGGATAAAGAAGACAAGAAAACAAAATAAAAGATATATATGTATATTCAATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTCTTGTACAGTAGCAGGTAGTATTTTTCAATAAAAATGCGAGTTCTCAC ] [-] EMBL CB636137 [ AAAACCAATGACGGAGGTCAAAGTGACATCTCCACCTCCAATGAACACAATGGAGCAGCTCTTAGCTGTTCAAAATGCTATTTCCAAAGTTGAAGAGCTTGTTCAGGATGCAAATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGATAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGAGCCTTGCATTCGTGCCCACAAGGTTGCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAGCACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGTAGTCGTGGAGAAGGATAAAGAAGACAAGAAAACAAAATAAAAGATATATATGTATATTCAATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTTTTGTACAGTAGCAGCTAGT TTTTTCAATAAAAATGCGAGTT ] consensusID : consensus_14122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 843 fasta sequence [TTAATGAGTCAATGAACAACTATAAGAAGGTTGAATTGGCCCAAGCCACAGTTGATGGAGTCAAAGTTGATGGCCTGGATACAAACTTGGCAGTGATGAAGGAATTGCTATCTCCCGTAAGTGAGCTATGGAGGTTTTTGGTGTTGCTGGCATCTTGGGATGAGCCAATTAAGTCCATGGTATTTTGCTTTTCATCGTCTTATATCATTATCAGGGGGTGGTTAGTCTATTTTCTTGTTTTGGTGCTCTTGTTTTCGGCAGCTTTCATGTTCCTTACAAGACTAACTAGCCATGGAAAACCAATG-ACGGAGGTCAAAGTGACATCT-CCACCTCCAATGAACACAATGGAGCAGCTCTTAGCTGTTCAAAATGCT-ATTTCCAAAGTTGAAGAGCTTGTTCAGGATGCAAATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGATAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGAGCCTTGCATTCGTGCCCACAAGGTTGCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAGCACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGTAGTCGTGGAGAAGGATAAAGAAGACA-AGAAAACAAAATAAAAGATATATATGTATATTCAATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTCTTGTACAGTAGCAGCTAGTATGTTTCAATAAAAATGCGAGTTCTCCCCTAAAAAAATAAAAAGAAAAAAAAAAAAAAAAAA] [-] EMBL CB669261 [TTAATGAGTCAATGAACAACTATAAGAAGGTTGAATTGGCCCAAGCCACAGTTGATGGAGTCAAAGTTGATGGCCTGGATACAAACTTGGCAGTGATGAAGGAATTGCTATCTCCCGTAAGTGAGCTATGGAGGTTTTTGGTGTTGCTGGCATCTTGGGATGAGCCAATTAAGTCCATGGTATTTTGCTTTTCATCGTCTTATATCATTATCAGGGGGTGGTTAGTCTATTTTCTTGTTTTGGTGCTCTTGTTTTCGGCAGCTTTCATGTTCCTTACAAGACTAACTAGCCATGGAAAACCAATG ACGGAGGTCAAAGTGACATCT CCACCTCCAATGAACACAATGGAGCAGCTCTTAGCTGTTCAAAATGCT ATTTCCAAAGTTGAAGAGCTTGTTCAGGATGCAAATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGATAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGAGCCTTGCATTCGTGCCCACAAGGTTGCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAGCACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGTAGTCGTGGAGAAGGATAAAGAAGACA AGAAAACAAAATAAAAGATATATATGTATATTCAATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTCTTGTACAGTAGCAGCTAGTATGTTTCAATAAAAATGCGAGTTCTCCCCTAAAAAAATAAAAAGA ] [-] EMBL CB676192 [ GATGGCCTGGATACAAACTTGGCAGTGATGAAGGAATTGCTATCTCCCGTAAGTGAGCTATGGAGGTTTTTGGTGTTGCTGGCATCTTGGGATGAGCCAATTAAGTCCATGGTATTTTGCTTTTCATCGTCTTATATCATTATCAGGGGGTGGTTAGTCTATTTTCTTGTTTTGGTGCTCTTGTTTTCGGCAGCTTTCATGTTCCTTACAAGACTAACTAGCCATGGAAAACCAATG ACGGAGGTCAAAGTGACATCT CCACCTCCAATGAACACAATGGAGCAGCTCTTAGCTGTTCAAAATGCT ATTTCCAAAGTTGAAGAGCTTGTTCAGGATGCAAATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGATAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGAGCCTTGCATTCGTGCCCACAAGGTTGCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAGCACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGTAGTCGTGGAGAAGGATAAAGAAGACA AGAAAACAAAATAAAAGATATATATGTATATTCAATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTCTTGTACAGTAGCAGCTAGTA GTTTCAATAAAAATGCGAG ] [+] EMBL BI796139 [ AAAAC ATGTCCGGAGGTCAAAGTGACATCTGCCACCTCCAATGAACACAATGGACAAGCTCTTAGCTGTTCAAAATGCTGATTTCCCAAGTTGAAGAGCTTGTTCAGGATGC AATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGATAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGA CCTTGCATTCGTGCCCACAA GTTGCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAGCACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGTAGTCGTGGAGAAGGATAAAGAAGACACAGAAAACCAAAT AAAGATATATATGTATATTC ATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACC ACGCTCGTCTTGTAC GTA ] [+] EMBL CF328883 [ GTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTCTTGTACAGTAGCAGCTAGTATTTTTCAATAAAAATGCGAGTTCTCACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14122#0 GGGCTAGAGAACCCTCCACCCCAAATAGCCACAGCCAAGAAACATCTAGGGTTGGAGGGA 60 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 GTCCAGTCCACCACCACCAGGCGCGCCTCCAGTGCTCCCTGCTGTCCACGCCGGCGCCGC 120 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 GCCTCCCCACCGTCCCCGCCGCCGTCCGCTCCGTCCCCACCGTCCAAGCCGCCAAGCCGG 180 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 GGGCCGCGACGGAGCGACTCCTCGGGTCGCCGCCTCGCCGGTTGCGGGTTGCCGGCTTGG 240 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 TGGCTTGGCGCGGCGCCTTCTCCAGTTCTCTTGCTTGGCAACTGATCCGGCGCTCCACCA 300 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 TTCAACCGACCCCTGTTGAGGTAAGGTGAGGTGAGGTGAGGTGAGGATGGCGATGATGAA 360 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 CCGGACGCGGGATCTGCTGATGGAGGGGTTCGAGGGCCTCGTGCGGGAGGGCTCCTTCAG 420 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 CTGGGCCCTCCCCCGCCGCGGGGCTTCGCCGGTGGACGACGCCGATGACCCCGACAGCTC 480 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 CTCCTCCTCCTCCTCCGGCAAGCAGCCCTCCATCTCCGGCCTCTCCCCCAAGGCCAACGC 540 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 CGTCGTCTCTCGCTGCTCCCGGGTACTTGGTACTTCCACGGATGAGCTGCAGTATGACTT 600 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 TGATATGCAAGCATCTGATTCCATAAAGCAGCCAAGAAATTATGCAAGAAATTTTTTGGA 660 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 ATATTGTTGTTTGAGGGCACTTGCACATGCCTCACAAGTTGCAGGGTATCTTTCTGACAA 720 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 AAGCTTTCGTCGCCTAAATTTTGATATGATGCTAGCTTGGGAAGTTCCCTCTTCTTCAAG 780 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 CGAGCTCACTGTTAAGGTTGAAGTAGACAACACAGTCAGTTTAGAGGCTTTTTCAAGAAT 840 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 AGCACCTGCAATTCCAACAATCACTGATGTGGTAACATGTTCAAATCTATTTGATGTACT 900 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 TTCATCTTCAAGTGGAGGCCGGCTTACATTTCCTGTATATGATAAGTACCTTACAGGATT 960 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 GGACAGAGCAATTAAGAAAATGAAAGGACAATCTGAGTCCTCGCTTTTATCTGCCCAGCG 1020 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 GTCTCAGAGAGGAGAAAGGATTGTAGAAGTAGATGGAACATTGACGACTCAACCAGTACT 1080 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 TGAACATGTTGGGATTTCGACATGGCCAGGAAGGTTAACACTTACTGATCATGCTCTTTA 1140 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 CTTCGAAGCACTTCGGGTTGTGACCTATGATAAGCCTAAAGCTTATGAGCTTGCCGAAGA 1200 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 TCTAAAGCAGTCTGTTAAACCTGAGCTGACTGGTCCATGGGGCTCACGGCTATTTGACAA 1260 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 AGCTGTTATGTATAAATCAACAACTTTAACAGAACCAGTGATCATAGAATTTCCAGAGTT 1320 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 GGCTGGCCACTTTCGTCGTGACTATTGGCTGGCCATCATATCAGAAATTCTCTATGTCCA 1380 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 CAGATTTGTTAGGAAGTTTGACATAAGTGGAGTTGACAAAGAGGAAACAATTTTGAAGGC 1440 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 TGTACTAAGCATTATGCGGCTACAAGCTATTGAAGAGTTAGCCATTCCAGTTTCTAATCG 1500 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 ATTCGAGTCTCTTTTGATGTTTAATCTATGTGACAAACTTCCCGGAGGTGATGTAATACT 1560 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 TGAAACACTAGCTGGTTCTATATCATCGAGAAGATCAACTCAAGTTAACCAACCTGGCAC 1620 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 TAGCAGTGGAAGGCATTCAATGTCCCCCTTTACTGTTCTGTCGAATCTTGGAGTGGTATC 1680 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 ACCAATTAATAAAGGTGAGAGACTCTTTGTTGGCGAGATAGTTGTTGGGGAAATGAGTGC 1740 consensus_14122#1 ------------------------------------------------------------ consensus_14122#0 CTTGCAGAAGGTAGTTAATGAGTCAATGAACAACTATAAGAAGGTTGAATTGGCCCAAGC 1800 consensus_14122#1 --------------TTAATGAGTCAATGAACAACTATAAGAAGGTTGAATTGGCCCAAGC 46 ********************************************** consensus_14122#0 CACAGTTGATGGAGTCAAAGTTGATGGCCTGGATACAAACTTGGCAGTGATGAAGGAATT 1860 consensus_14122#1 CACAGTTGATGGAGTCAAAGTTGATGGCCTGGATACAAACTTGGCAGTGATGAAGGAATT 106 ************************************************************ consensus_14122#0 GCTATCTCCCGTAAGTGAGCTATGGAGGTTTTTGGTGTTGCTGGCATCTTGGGATGAGCC 1920 consensus_14122#1 GCTATCTCCCGTAAGTGAGCTATGGAGGTTTTTGGTGTTGCTGGCATCTTGGGATGAGCC 166 ************************************************************ consensus_14122#0 AATTAAGTCCATGGTATTTTGCTTTTCATCGTCTTATATCATTATCAGGGGGTGGTTAGT 1980 consensus_14122#1 AATTAAGTCCATGGTATTTTGCTTTTCATCGTCTTATATCATTATCAGGGGGTGGTTAGT 226 ************************************************************ consensus_14122#0 CTATTTTCTTGTTTTGGTGCTCTTGTTTTCGGCAGCTTTCATGTTCCTTACAAGACTAAC 2040 consensus_14122#1 CTATTTTCTTGTTTTGGTGCTCTTGTTTTCGGCAGCTTTCATGTTCCTTACAAGACTAAC 286 ************************************************************ consensus_14122#0 TAGCCATGGAAAACCAATGACGGAGGTCAAAGTGACATCTCCACCTCCAATGAACACAAT 2100 consensus_14122#1 TAGCCATGGAAAACCAATGACGGAGGTCAAAGTGACATCTCCACCTCCAATGAACACAAT 346 ************************************************************ consensus_14122#0 GGAGCAGCTCTTAGCTGTTCAAAATGCTATTTCCAAAGTTGAAGAGCTTGTTCAGGATGC 2160 consensus_14122#1 GGAGCAGCTCTTAGCTGTTCAAAATGCTATTTCCAAAGTTGAAGAGCTTGTTCAGGATGC 406 ************************************************************ consensus_14122#0 AAATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGA 2220 consensus_14122#1 AAATATTGTTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGA 466 ************************************************************ consensus_14122#0 TAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGAGCCTTGCATTCGTGCCCACAAGGTT 2280 consensus_14122#1 TAGAGCTATACTTGCCTTGGTAGTGATGGCTCTGAGCCTTGCATTCGTGCCCACAAGGTT 526 ************************************************************ consensus_14122#0 GCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAG 2340 consensus_14122#1 GCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACCAAGGAGAGCAAG 586 ************************************************************ consensus_14122#0 CACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGT 2400 consensus_14122#1 CACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGT 646 ************************************************************ consensus_14122#0 AGTCGTGGAGAAGGATAAAGAAGACAAGAAAACAAAATAAAAGATATATATGTATATTCA 2460 consensus_14122#1 AGTCGTGGAGAAGGATAAAGAAGACAAGAAAACAAAATAAAAGATATATATGTATATTCA 706 ************************************************************ consensus_14122#0 ATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTCTTGT 2520 consensus_14122#1 ATGTAATTATGTGCCATGTTTGGCCGATGGGTTGGGGTGGATCACCAACGCTCGTCTTGT 766 ************************************************************ consensus_14122#0 ACAGTAGCAGCTAGTATTTTTCAATAAAAATGCGAGTTCTCACCTAGAATTAATTGCTTG 2580 consensus_14122#1 ACAGTAGCAGCTAGTATGTTTCAATAAAAATGCGAGTTCTCCCCTAAAAA-AATAAAAAG 825 ***************** *********************** **** ** *** * consensus_14122#0 CCTCGTACTTTGATTATTTCGTATATAGTTTCATCGGGTGATCGGGAATGTTGGACAACA 2640 consensus_14122#1 AAAAAAAAAAAAAAAAAA------------------------------------------ 843 * * * consensus_14122#0 CCCCAGGTTTATGTGATTTTAGCTGAATTTCTTAC 2675 consensus_14122#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||