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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1555 fasta sequence
[GACTCCATCCGTTTTCCATTTCCACTCCTCCCCCCACCCAACTCACCATCGCCATTCCTTCCCTCCTTCCACCGCTCCCTCTCTCTTCCATGGCCGTGCAGGCGCAGTACCTCTCCCACGCCTCCTTCCCCCACGACCTCTATGGCCTCAGGGCTCTGGAGGGTGCGACGGCGGCGGGTTCTTTGTTCTTGGACGACCACGGCGGGTGCGCGCCGGCGACTCCGGCGGCGGCCGCGG-C-T-GGGATAGGGCACACGGTGCTGAGCGACCTTCCCCGGAGCGAGCTTACCTGCAACGACAATAACGGCGCGGGATACGGATTCGTGCCGAGGAAGAGGGCGCGCCTGGATGCGGATGAGTCGGCCGGGGCGTTGATGGCGGCGGCGGCGGCGCAGCAGCAGCGCATGGTTCTTCCGCCCCATGGCCTTGTC-TTTCCCGGGGATGTGCAGAGCAGGGCGGTGGG-TTGCGGCG-CCGCGTCCACC-AGC-GGGAGGGCTGGCAA-TGCCGCCGGCC-TC-TCGCAGGGGC-TCCTGTCTCAGCTCTATCATCAGGGTGTCGAGATCGACGCGCTCGTGCGACTCGAGAGCGAGCGGATGCGTGCGGGGCTCGAGGAGGCTCGCCGGCGTCACGTACGGGC-GGTGGTGTCCACCGTCGAGCGCGCCGCGGCCGGGCGTCTCCGTGCCGCGGAGGCCGAGCTCGAGCGCGCGCGGTGCCGCAACATGGAGCTCGAGGAGAGGCTGCGCCAGATGACCGCCGAGGGGCAGGCGTGGCTCAGCGTCGCCAAGAGCCACGAGGCCGTCGCCGCGGGGCTCCGCGCCACCCTGGATCAGCTCCTCCAGTCACCCTGCGCCGCCCTTGCCGTTGCCGGCGCGGCCGGCGCCGGTGGCGCCGAGGGCGACGCCGAGGACGCGCAGTCCTGCTGCTACGAGACCCCGTGCGGTGGCGACAACGCCGGCGCGGATGACGCGGCGTCCAAGACCCCCGCCGCCGCGCTCTGCAAGGCGTGCGGCGCCGGCGAGGCGTCCATGCTGCTGCTCCCGTGCCGGCACCTCTGCCTGTGCCGCGGCTGCGAGGCCGCCGTCGACGCCTGCCCGGTGTGCGCGGCCACCAAGAACGCCTCGCTCCATGTCCTGCTGTCCTGAGAGCC-AGCCTGGCCCGCGTCGCGCGTGGCCAAGCTCCTCGTCGTCGTCGTCGTCTTCCCCCAACC-TCTCGGCCGCTCTGGCGCGCCACGGCGGCACGGCACGTGCGTCA-CCCCA--CCCATGTGATCTTGGCGGACACTGAGCTTTTGTTGCACG-CCAGTAG-AAGTCACCCAC-AAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAA-CCCTACTTTGCTGTCCATAACCCTTCACCCCCTTCTACATGATTAG-CCCCAACTTTTTTGTGGTAAAGAAAA-CCCCCGATTGTATTCTCGATGAAATACATGCATGCACCAGGTCTAGCCTTAAAAGAAAAACAGTGTCGACACTGTACTGTAGCACTCCAAAAAAAAAAAAAAAAA]
[+] EMBL AK120702 [GACTCCATCCGTTTTCCATTTCCACTCCTCCCCCCACCCAACTCACCATCGCCATTCCTTCCCTCCTTCCACCGCTCCCTCTCTCTTCCATGGCCGTGCAGGCGCAGTACCTCTCCCACGCCTCCTTCCCCCACGACCTCTATGGCCTCAGGGCTCTGGAGGGTGCGACGGCGGCGGGTTCTTTGTTCTTGGACGACCACGGCGGGTGCGCGCCGGCGACTCCGGCGGCGGCCGCGG C T GGGATAGGGCACACGGTGCTGAGCGACCTTCCCCGGAGCGAGCTTACCTGCAACGACAATAACGGCGCGGGATACGGATTCGTGCCGAGGAAGAGGGCGCGCCTGGATGCGGATGAGTCGGCCGGGGCGTTGATGGCGGCGGCGGCGGCGCAGCAGCAGCGCATGGTTCTTCCGCCCCATGGCCTTGTC TTTCCCGGGGATGTGCAGAGCAGGGCGGTGGG TTGCGGCG CCGCGTCCACC AGC GGGAGGGCTGGCAA TGCCGCCGGCC TC TCGCAGGGGC TCCTGTCTCAGCTCTATCATCAGGGTGTCGAGATCGACGCGCTCGTGCGACTCGAGAGCGAGCGGATGCGTGCGGGGCTCGAGGAGGCTCGCCGGCGTCACGTACGGGC GGTGGTGTCCACCGTCGAGCGCGCCGCGGCCGGGCGTCTCCGTGCCGCGGAGGCCGAGCTCGAGCGCGCGCGGTGCCGCAACATGGAGCTCGAGGAGAGGCTGCGCCAGATGACCGCCGAGGGGCAGGCGTGGCTCAGCGTCGCCAAGAGCCACGAGGCCGTCGCCGCGGGGCTCCGCGCCACCCTGGATCAGCTCCTCCAGTCACCCTGCGCCGCCCTTGCCGTTGCCGGCGCGGCCGGCGCCGGTGGCGCCGAGGGCGACGCCGAGGACGCGCAGTCCTGCTGCTACGAGACCCCGTGCGGTGGCGACAACGCCGGCGCGGATGACGCGGCGTCCAAGACCCCCGCCGCCGCGCTCTGCAAGGCGTGCGGCGCCGGCGAGGCGTCCATGCTGCTGCTCCCGTGCCGGCACCTCTGCCTGTGCCGCGGCTGCGAGGCCGCCGTCGACGCCTGCCCGGTGTGCGCGGCCACCAAGAACGCCTCGCTCCATGTCCTGCTGTCCTGAGAGCC AGCCTGGCCCGCGTCGCGCGTGGCCAAGCTCCTCGTCGTCGTCGTCGTCTTCCCCCAACC TCTCGGCCGCTCTGGCGCGCCACGGCGGCACGGCACGTGCGTCA CCCCA CCCATGTGATCTTGGCGGACACTGAGCTTTTGTTGCACG CCAGTAG AAGTCACCCAC AAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAA CCCTACTTTGCTGTCCATAACCCTTCACCCCCTTCTACATGATTAG CCCCAACTTTTTTGTGGTAAAGAAAA CCCCCGATTGTATTCTCGATGAAATACATGCATGCACCAGGTCTA ]
[+] EMBL C27234 [ ATTTCCACTCCTCCCCCCACCCAACTCACCATCGCCATTCCTTCCCTCCTTCCACCGCTCCCTCTCTCTTCCATNGCCGTGCAGG GCAGTACCTCTCCCACNNCTCCTTCCCCCACGACCTCTATGGCCTCAGGGCTCTGGAGGGTGCGACGGCNGCGGGTTCTTTGTTCTTGGACGACCACGGCGGGTNCGCGCCGNCGACTCCGGCGGC TCGCGGNCNTGGGGATAGGGCACACGGT CTGAGCGACCTTCCCCGGAGCGAGCTTACCTGCAACGACAATAACGGCNCGGGATACGGATTCGTGCCGA ]
[+] EMBL CA754090 [ TTCCACTCCTCCCCCCACCCAACTCACCATCGCCATTCCTTCCCTCCTTCCACCGCTCCCTCTCTCTTCCATGGCCGTGCAGGCGCAGTACCTCTCCCACGCCTCCTTCCCCCACGACCTCTATGGCCTCAGGGCTCTGGAGGGTGCGACGGCGGCGGGTTCTTTGTTCTTGGACGACCACGGCGGGTGCGCGCCGGCGACTCCGGCGGCGGCCGCGG C T GGGATAGGGCACACGG ]
[+] EMBL AU091926 [ TAGGGCACACGGTGCTGAGCGACCTTCCCCGGAGCGAGCTTACCNGCAACGACAATAACGGCGCGGGATACGGATTCGTGCCGAGGGNGANGGCGCGCCTGGATGCGGATGAGTCGGCCGGGGCGTTGATNGCGGCGGCGGCGGCGCA CAGCAGCGCATGGTTCTTCCGCCCCATNGCCTTGTC TTTCCCGGGGATGTGCAGA ]
[+] EMBL AU176428 [ AGCGACCTTCCCCGGAGCGAGCTTACCTGCAACGACAATAACGGCGCGGGATACGGATTCGTGCCGAGGAAGAGGGCGCGCCTGGATGCGGATGAGTCGGCCGGGGCGTTGATGGCGGCGGCGGCGGCGCAGCAGCAGCGCATGGTTCTTCCGCCCCATGGCCTTGTCTTTTCCCGGGGATGTGCAGAGCAGGGCGGTGGGTTTGCGGCGCCCGCGTCCACCAAGCGGGGAGGGCTGGCAATTGCCGCCGGCCTTCTTCGCAGGGGCTTCCTGTCTtaagc ]
[+] EMBL BP184407 [ ATGGCCTTGTC TTTCCCGGGGATGTGCAGAGCAGGGCGGTGGG TTGCGGCG CCGCGTCCACC AGC GGGAGGGCTGGCAA TGCCGCCGGCC TC TCGCAGGGGC TCCTGTCTCAGCTCTATCATCAGGGTGTCGAGATCGACGCGCTCGTGCGACTCGAGAGCGAGCGGATGCGTGCGGGGCTCGAGGAGGCTCGCCGGCGTCACGTACGGGC GGTGGTGTCCACCGTCGAGCGCGCCGCGGCCGGGCGTCTCCGTGCCGCGGAGGCCGAGCTCGAGCGCGCGCGGTGCCGCATCATGGAGCTCGAGGAGAGGCTGCGCCAGATGACCGCCGAGGGGCAGGCGTGGCTCATCGTCGCCAAGAGCCACGAGGCCGTCGCCGCGGGGCTCCGCGCCACCCTGGATCAGCTCCTCCAGTCACCCTGCGCCGCCCTTGCCGTTGCCGGCGCGGCCGGCGCCGGTGGCGCCGAGGGCGACGCCGAGGACGCGCAGTCCTGCTGCTACGAGACCCCGTGCGGTGGCGACAACGCCGGCGCGGATGACGCGGCGTCCAAGACCCCCGCCGCCGCGCTCTGCAAGGCGTGCGGCGCCGGCGAGGCGTCCATGCTGCTGCTCCCGTGCCGGCACCTCTGCCTGTGCCGCGGCTGCGAGGCCGCCATCGACGCCTGCCCGGTGTGCGCGGCCACCAAGAACGCCTCGCTCCATGTCCTGCTGTCCTGAGAGCC AGCCTGGCCCGCGTCGCGCGTGGCCAAGCTCCTCGTCGTCGTCGTCGTCTTCCCCCAACC TCTCGGCCGCTCTGGCGCGCCACGGCGGCACGGCACGTGCGTCA CCCCA CCCATGTGATCTTGGCGGACACTGAGCTTTTGTTGCACG CCAGTAG AAGTCACCCAC AAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAA CCCTACTTTGCTGTCCATAACCCTTCACCCCCTTCTACATGATTAG CCCCAACTTTTTTGTGGTAAAGAAAA CCCCCGATTGTATTCTCGATGAAATACATGCATGCACCAGGTCTAGCCTTAAAAGAAAAA ]
[+] EMBL AU184852 [ AGCGGATGCGTGCGGGGCTCGAGGAGGCTCGCCGGCGTCACGTACGGGCAGGTGGTGTCCACCGTCGAGCGCGCCGAGGCCGGGCGTCTCCGTGCCGAGGAGGCCGAGCTCGAGCGCGCGCGGTGCCGCAACATGGAGCTCGAGGAGAGGCTGCGCCAGATGACCGCCGAGGGGCAGGCGTGGCTCAGCGTCGCCAAGAGCCACGAGGCCGTCGCCGCGGGGCTCCGCGCCACCCTGGATCAGCTCCTCCAGTCACCCTGCGCCGCCCTTGCCGTTGCCGGCGCGGCCGGCGCCGGTGGCGCCGAGGGCGACGCCGAGGACGCGCAGTCCTGCTGCTACGAGACCCCGTGCGG ]
[+] EMBL C99693 [ tccCGGCCACAAAAAACGCCTCGCTCNATGTCCTGTTGTCCTGAGAGCCAAGCCTGGCCCNCGTCGCGCGTGGCCAAGCTCCTCGTCGTCGTCGTCGTCTTCCCCCAACC TCTCGGCCGCTCTGGCGCGCCACGGCGGCACGGCACGTGCGTCA CCCCA CCCATGTGATCTTGGCGGACACTGAGCTTTTGTTGCACG CCAGTAG AAGTCACCCAC AAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAA CCCTACTTTGCTGTCCAAAAaaaa ]
[+] EMBL C99682 [ CTCGCTCCATGTCCTGTTGTCCTGAGAGCC AGCCTGGCCC CGTCGCGCGTGGCCAAGCTCCTCGTCGTCGTCGTCGTCTTCCCCCAACC TCTCGGCCGCTCTGGCGCGCCACGGCGGCACGGCACGTGCGTCA CCCCA CCCATGTGATCTTGGCGGACACTGAGCTTTTGTTGCACG CCAGTAG AAGTCACCCAC AAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAA CCCTACTTTGCTGTCCAAAAaaaa ]
[-] EMBL C28750 [ GCA AGCNTGGCCCCCGTCGCGCGTGGCAAAGCTCCTCGTCGTCGTCGTCGTCTTCCCCCAACCTTCTCGGCCGCTNTGGCGCGCCACGGCGGGACGGAACGTGCGTCA CCCCA CCCATGTGATCTTGGCGGACACTGAGCTTTT NTGCACG CCAGTAG AAGTCACCCAC AAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAA CCCTACTTTGCTGTCCATAACCCTTCACCCCCTTCTACATGATTAG CCCCAACTTTTTTGTGGTAAAGAAAA CCCCCGATTGTATTCTCGATGAAATACATGCATGCACCAGGTCTAGCCTTAAAA ]
[+] EMBL BI809424 [ CGCTCTGGCGCGCCACGGCGGCACGGCACGTGCGTCA CCCCA CCCATGTGATCTTGGCGGACACTGAGCTTTTGTTGCACG CCAGTAG AAGTCACCCAC AAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCA CTAA CCCTACTTT CT TCCATAACCCTTCACCCCCTTCTACATGATTAG CCCCAACTTTTTT TGGTAAAGAAAA CCCCCGATTGTATTCTCGATGAAATACATGCATGCACCAGGTCTAGCCTTAAAAGAAAAAaaa ]
[+] EMBL AU166841 [ CGGCACGGCACGTGCGTCACCCCCA CCCATGTGATCTTGGCGGACACTNAGCTTTTGTTGCACGCCCAGTAGAAAGTCACCCACAAAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAACCCCTACTTTGCTGTCCATAACCCTTCACCCCCTTCTACATGATTAGCCCCCAACTTTTTTGTGGTAAAGAAAACCCCCCGATTGTATTCTCGAT AAATACATGCATGCACCAGGTCTAGCCTTAAAAAAAAAAaa ]
[+] EMBL AU032816 [ nACGG ACGT CGTCA CCCCA CCCATGTGATCTTGGCGGACACTGAGCTTTTGTTGCACG CCAGTAG AAGTCACCCAC AAAGTTGCATCTAGTTTAGGTTAAANCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAA CCCTACTTTGCTGTCCATAACCCTTCACCCCCTTCTACATGATTAG CCCCAACTTTTTTGTGGTAAAGAAAA CCCCCGATTGTATTCTCGATGAAATACATGCATGCACCAGGTCTAGCCTTAAAAGAAAAGCAGTGTCGACACTGTACTGTAGCACTCCAAAAAAAAAAAAAAAAA]
[-] EMBL AU062850 [ CGTCA CCCCA CCCATGTGATCTTGGCGGACACTGAGCTTTTGTTGCACG CCAGTAG AAGTCACCCAC AAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAA CCCTACTTTGCTGTCCATAACCCTTCACCCCCTTCTACATGATTAG CCCCAACTTTTTTGTGGTAAAGAAAA CCCCCGATTGTATTCTCGATGAAATACATGCATGCACCAGGTCTAGCCTTAAAAGAAAAGCAGTGTCGACACTGTACTGTAGCACTCCAA ]
[-] EMBL AU062849 [ GTAA CCCCAACCCCATGTGATCTTGGNGGACACTGAGCTTTTGTTGCACG CCAGTAG AAGTCACCCAC AAAGTTGCATCTAGTTTAGGTTAAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAA CCCTACTTTGCTGTCCATAACCCTTCACCCCCTTCTACATGATTAG CCCCAACTTTTTTGTGGTAAAGAAAA CCCCCGATTGTATTCTCGATGAAATACATGCATGCACCAGGTCTAGCCTTAAAAGAAAAGCAGTGTCGANACTGTACTGTAGNACTCCAA ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||