These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2597 fasta sequence [TCTCTCTCGCCGTGCATCTCTTTCCCCTACCATCCCACGCCTCCCTCTCCCCCGATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACTGGCTTTCCTGTTGGTTACACTCCAGCTGGAATCTCGGAAGATTACATCATTAACCATTTAAAGTTTAAGGTGTTGGTCCATGAGTACGAGGGCAGGAATGTGGAGATCATTGGCACTGGGGAAGAAGGATCTGGTGTCATCTCGGAATTTGACAAGAAGGGGATGTCTGGGTATCAGATTGTTGGTTTTGAGGTTGTGCCTTGCAGTGTGAAGCGTGATGCCGAGGCTTTCTCCAAGAGTAACATGTATGACAGCATTGAACCTGTGAGCTGCCCAATGGAGCTTCAGAAGTCTCAGGTGATCAGGCAACAGGAGAGGATCACTTTCACTTATGACGTTGAATTTGTGAAGAGTGACATCAAGTGGCCATCTAGGTGGGATGCTTATCTGAAGATGGAGGCAGGTGCTAAAGTCCACTGGTTCTCCATTATGAACTCCCTAATGGTGATCCTGTTCTTGGCTGGTATTGTCTTTGTTATATTCTTGAGAACTGTCAGGAGGGACTTGACGAGGTATGAAGAACTCGACAAGGAGGCGCAGGCACAGATGAATGAGGAGCTATCTGGGTGGAAGCTTGTTGTGGGAGATGTATTCAGAGAGCCAACTTGCCCTAAGCTGCTGTGTGTCATGATTGGTGATGGTGTTCAGATTTTGGGCATGGCAATAGTAACAATTATTTTCTCCACACTTGGGTTCATGTCTCCAGCATCAAGAGGAATGCTTCTCACTGGGATGATCATTCTCTATCTTTTCCTTGGTATTGCAGCTGGATATGTCAGTGTGCGGCTGTGGAAGACTATTAAGGGCACATCTGAAGGGTGGAGATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTATTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATTTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTCTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCATTTTTTTATCATGTCCAGTACAAATTTATATTTCCTTATCTGTAGTGGGATA] [+] EMBL AK102663 [TCTCTCTCGCCGTGCATCTCTTTCCCCTACCATCCCACGCCTCCCTCTCCCCCGATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTGCCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACTGGCTTTCCTGTTGGTTACACTCCAGCTGGAATCTCGGAAGATTACATCATTAACCATTTAAAGTTTAAGGTGTTGGTCCATGAGTACGAGGGCAGGAATGTGGAGATCATTGGCACTGGGGAAGAAGGATCTGGTGTCATCTCGGAATTTGACAAGAAGGGGATGTCTGGGTATCAGATTGTTGGTTTTGAGGTTGTGCCTTGCAGTGTGAAGCGTGATGCCGAGGCTTTCTCCAAGAGTAACATGTATGACAGCATTGAACCTGTGAGCTGCCCAATGGAGCTTCAGAAGTCTCAGGTGATCAGGCAACAGGAGAGGATCACTTTCACTTATGACGTTGAATTTGTGAAGAGTGACATCAAGTGGCCATCTAGGTGGGATGCTTATCTGAAGATGGAGGCAGGTGCTAAAGTCCACTGGTTCTCCATTATGAACTCCCTAATGGTGATCCTGTTCTTGGCTGGTATTGTCTTTGTTATATTCTTGAGAACTGTCAGGAGGGACTTGACGAGGTATGAAGAACTCGACAAGGAGGCGCAGGCACAGATGAATGAGGAGCTATCTGGGTGGAAGCTTGTTGTGGGAGATGTATTCAGAGAGCCAACTTGCCCTAAGCTGCTGTGTGTCATGATTGGTGATGGTGTTCAGATTTTGGGCATGGCAATAGTAACAATTATTTTCTCCACACTTGGGTTCATGTCTCCAGCATCAAGAGGAATGCTTCTCACTGGGATGATCATTCTCTATCTTTTCCTTGGTATTGCAGCTGGATATGTCAGTGTGCGGCTGTGGAAGACTATTAAGGGCACATCTGAAGGGTGGAGATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTATTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATTTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTCTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCATTTTTTTATCATGTCCAGTACAAATTTATATTTCCTTATCTGTAGTGGGATA] [+] EMBL CB627641 [ CCTCTCCCCCGATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACTGGCTTTCCTGTTGGTTACACTCCAGCTGGAATCTCGGAAGATTACATCATTAACCATTTAAAGTTTAAGGTGTTGGTCCATGAGTACGAGGGCAGGAATGTGGAGATCATTGGCACTGGGGAAGAAGGATCTGGTGTCATCTCGGAATTTGACAAGAAGGGGATGTCTGGGTATCAGATTGTTGGTTTTGAGGTTGTGCCTTGCAGTGTGAAGCGTGATGCCGAGGCTTTCTCCAAGAGT ACATG ] [+] EMBL CB637400 [ CTCTCCCCCGATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACT ] [+] EMBL CB635782 [ ATCCATCCACCGGAAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCCCACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGACTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCTGCTACTACAGCCTGCCATACTGCCGGCCCCTAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACTGGCTTTCCTGTTGGTTACACTCCAACTGGAATCTCGGAAGATTA ] [-] EMBL CA882793 [ ATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGGCAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGG ] [+] EMBL CB629534 [ GACAGCCTTGAACCTGTGAGCTGCCCAATGGAGCTTCAGAAGTCTCAGGTGATCAGGCAACAGGAGAGGATCACTTTCACTTATGACGTTGAATTTGTGAAGAGTGACATCAAGTGGCCATCTAGGTGGGATGCTTATCTGAAGATGGAGGCAGGTGCTAAAGTCCACTGGTTCTCCATTATGAACTCCCTAATGGTGATCCTGTTCTTGGCTGGTATTGTCTTTGTTATATTCTTGAGAACTGTCAGGAGGGACTTGACGAGGTATGAAGAACTCGACAAGGAGGCGCAGGCACAGATGAATGAGGAGCTATCTGGGTGGAAGCTTGTTGTGGGAGATGTATTCAGAGAGCCAACTTGCCCTAAGCTGCTGTGTGTCATGATTGGTGATGGTGTTCAGATTTTGGGCATGGCAATAGTAACAATTATTTTCTCCACACTTGGGTTCATGTCTCCAGCATCAAGAGGAATGCTTCTCACTGGGATGATCATTCTCTATCTTTTCCTTGGTATTGCAGCTGGATATGTCAGTGTGCGGCTGTGGAAGACTATTAAGGGCACATCTGAAGGGTGGAGATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCAT ] [+] EMBL CA999369 [ GATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCAT ] [+] EMBL CB000711 [ GATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTG ] [+] EMBL CB000712 [ GATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAAGAACACTGCCATTCCGAACCCTGTTCATTGAGCTCTTCTTTATTCTGGCAAGCATTTGGCTTGGAAGGCTCTACTATGTGCTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCAT ] [-] EMBL CB629535 [ CATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTATTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATTTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCAGATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAAaaaagga ] [+] EMBL CF331976 [ TGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCTATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTACTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATCTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTCTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCAaaaaaaaaa ] [-] EMBL CB635783 [ TTCGTCCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTATTGTTTGAGGAAAAAATGATCAACAGAAGATGTTTGTAAGATGAAAAGTATTCTCCACCTAGCGGACGTAGTCATTTTTTCCTCTATTCCACCCGTTGTTGCGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCC ] consensusID : consensus_14142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [TATCTTTTCCATGGTATTGCTGCCGGATATGTCAGTGTGCGGCTGTGGAAGACTATTTGTGGCACATCTGAAGGGTGGAGATCAGTGTCCTGCGTTAACTGCCTGCTGCTTCCCTGATGTCTGATTCATGGTCCTTACTGTCTAATACTTCGTCTCATGGGGAATCAAGAGCACTGGAGCTTTACCTATCTCACTATATCTTCGCCCTTCTATGCTATAGTGGTCTCCTGCACTACTCTAGCTGCGCGTTCAACCTACATTGCTGGGAGTGGCGCTATAGGTAGGGTTACAANGTACTCACGCTGCCAGTATTAGTACGTATTTCTCTCGATCGCGATAGCCGAANCCCNAGGAATACCTCGGCAGGAGAAAAGAGTACCCATTGGCAATCGTGGCANANATTANCCCNCCCATTNCNGANTNGNGGNCCTCATGCNTNGTGGNCTTNCACGTCTAGGTNTTTAGTCANGNCGGNAANNACCTAGCCNTNCGAC] [+] EMBL CA753181 [TATCTTTTCCATGGTATTGCTGCCGGATATGTCAGTGTGCGGCTGTGGAAGACTATTTGTGGCACATCTGAAGGGTGGAGATCAGTGTCCTGCGTTAACTGCCTGCTGCTTCCCTGATGTCTGATTCATGGTCCTTACTGTCTAATACTTCGTCTCATGGGGAATCAAGAGCACTGGAGCTTTACCTATCTCACTATATCTTCGCCCTTCTATGCTATAGTGGTCTCCTGCACTACTCTAGCTGCGCGTTCAACCTACATTGCTGGGAGTGGCGCTATAGGTAGGGTTACAANGTACTCACGCTGCCAGTATTAGTACGTATTTCTCTCGATCGCGATAGCCGAANCCCNAGGAATACCTCGGCAGGAGAAAAGAGTACCCATTGGCAATCGTGGCANANATTANCCCNCCCATTNCNGANTNGNGGNCCTCATGCNTNGTGGNCTTNCACGTCTAGGTNTTTAGTCANGNCGGNAANNACCTAGCCNTNCGAC] consensusID : consensus_14142#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [TTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTACTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATCTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTTTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCAAAAAAAAAAA] [-] EMBL CF331975 [TTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTACTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATCTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTTTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCAAAAAAAAAAA] consensusID : consensus_14142#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence [TTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTATTTTTTCCTCTATCCAACCGTTGTTGTGAGTTGTAACTGCAGAGTTATTAACTGACTCACCCGGCTTTCAAGGGTTGGCACCATGTGATGATTGCATGACTCAATCAGGAAAGACCCGCAATTGGACTA] [+] EMBL AA751066 [TTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTATTTTTTCCTCTATCCAACCGTTGTTGTGAGTTGTAACTGCAGAGTTATTAACTGACTCACCCGGCTTTCAAGGGTTGGCACCATGTGATGATTGCATGACTCAATCAGGAAAGACCCGCAATTGGACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14142#0 TCTCTCTCGCCGTGCATCTCTTTCCCCTACCATCCCACGCCTCCCTCTCCCCCGATCCAT 60 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 CCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAG 120 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 GCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCT 180 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 CCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCT 240 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 GGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTT 300 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 ACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAA 360 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 GGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGAC 420 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 AATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAA 480 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 GGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTT 540 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 AACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTA 600 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 CAGTGGACTGGCTTTCCTGTTGGTTACACTCCAGCTGGAATCTCGGAAGATTACATCATT 660 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 AACCATTTAAAGTTTAAGGTGTTGGTCCATGAGTACGAGGGCAGGAATGTGGAGATCATT 720 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 GGCACTGGGGAAGAAGGATCTGGTGTCATCTCGGAATTTGACAAGAAGGGGATGTCTGGG 780 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TATCAGATTGTTGGTTTTGAGGTTGTGCCTTGCAGTGTGAAGCGTGATGCCGAGGCTTTC 840 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TCCAAGAGTAACATGTATGACAGCATTGAACCTGTGAGCTGCCCAATGGAGCTTCAGAAG 900 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TCTCAGGTGATCAGGCAACAGGAGAGGATCACTTTCACTTATGACGTTGAATTTGTGAAG 960 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 AGTGACATCAAGTGGCCATCTAGGTGGGATGCTTATCTGAAGATGGAGGCAGGTGCTAAA 1020 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 GTCCACTGGTTCTCCATTATGAACTCCCTAATGGTGATCCTGTTCTTGGCTGGTATTGTC 1080 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TTTGTTATATTCTTGAGAACTGTCAGGAGGGACTTGACGAGGTATGAAGAACTCGACAAG 1140 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 GAGGCGCAGGCACAGATGAATGAGGAGCTATCTGGGTGGAAGCTTGTTGTGGGAGATGTA 1200 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TTCAGAGAGCCAACTTGCCCTAAGCTGCTGTGTGTCATGATTGGTGATGGTGTTCAGATT 1260 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TTGGGCATGGCAATAGTAACAATTATTTTCTCCACACTTGGGTTCATGTCTCCAGCATCA 1320 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 AGAGGAATGCTTCTCACTGGGATGATCATTCTCTATCTTTTCCTTGGTATTGCAGCTGGA 1380 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TATGTCAGTGTGCGGCTGTGGAAGACTATTAAGGGCACATCTGAAGGGTGGAGATCAGTG 1440 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAAC 1500 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTT 1560 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACA 1620 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 AGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCA 1680 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 CGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTG 1740 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTT 1800 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 GGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTT 1860 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 CTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCC 1920 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTC 1980 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 AGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCA 2040 consensus_14142#2 ------------------------------------------------------------ consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 ------------------------------------------------------------ consensus_14142#0 TTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCAC 2100 consensus_14142#2 ------------------------------------TTGACATCATTCTCCTTCGTGCAC 24 consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 -------------------------------TATCTTTTCCATGGTATTGCTGCCGGATA 29 consensus_14142#0 TATCTGTTCTCATCCGTGAAGATCGATTGATGAA-----TGAAGATTACGATACTCTCTG 2155 consensus_14142#2 TATCTGTTCTCATCCGTGAAGATCGATTGATGAA-----TGAAGATTACGATACTCTCTG 79 consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 TGTCAGTGTGCGGCTGTGGAAGACTATTTGTGGCACATCTGAAGGGTGGAGATCAGTGTC 89 consensus_14142#0 GCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTT 2215 consensus_14142#2 GCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTT 139 consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 CTGCGTTAACTGCCTGCTGCTTCCCTGATGTCTGATTCATGGTCCTTACTGTCTAATACT 149 consensus_14142#0 TATTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCAC 2275 consensus_14142#2 TACTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCAC 199 consensus_14142#3 -----------------------------------TTTTAAGATGAAAGGTATTCTCCAC 25 consensus_14142#1 TCGTCTCATGGGGAATCAAGAGCA-CTGGAGCTTTACCTATCTCACTATATCTTCGCCCT 208 ** * * *** ** consensus_14142#0 CTAGCGGACGTAGTCATTTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTA--ACTGCT 2333 consensus_14142#2 CTAGCGGACGTAGTCATCTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTA--ACTGCT 257 consensus_14142#3 CTAGCGGACGTAGT-ATTTTTTCCTCTAT-CCAACCGTTGTTGTGAGTTGTA--ACTGC- 80 consensus_14142#1 TCTATGC-TATAGTGGTCTCCTGCACTACTCTAGCTGCGCGTTCAACCTACATTGCTGGG 267 * **** * * * * *** * * * * * * * * *** consensus_14142#0 AGAGTTAAT-TAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTA 2392 consensus_14142#2 AGAGTTAAT-TAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTA 316 consensus_14142#3 AGAGTTA-T-TAACT--GACTCA-----CCCGGCTTT-CAAGGGTT----GGCACCA-TG 125 consensus_14142#1 AGTGGCGCTATAGGTAGGGTTACAANGTACTCACGCTGCCAGTATTAGTACGTATT--TC 325 ** * * ** * * * * * ** ** * * * consensus_14142#0 TGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACC 2452 consensus_14142#2 TGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACC 376 consensus_14142#3 TGATGATTG-CATGACT--CAATCAGGAAAGACCCGCAATTGGACTA------------- 169 consensus_14142#1 TCTCGATCGCGATAGCCG-AANCCCNAGGAATACCTCGGCAGGAGAAAAGAGTACCCATT 384 * *** * * * * consensus_14142#0 TGCCGTTCAAAATTCTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACT 2512 consensus_14142#2 TGCCGTTCAAAATTTTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACT 436 consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 GGCAATCGTGGCANANATTANCCCNCCCATTNCNGANTNGNG--GNCCTCATGCNTNGTG 442 consensus_14142#0 GTAATACGATTGCAAGTACCTGTTTCCTTGGCATTTTTTTATCATGTCCAGTACAAATTT 2572 consensus_14142#2 GTAATACGATTGCAAGTACCTGTTTCCTTGGCAAAAAAAAAAA----------------- 479 consensus_14142#3 ------------------------------------------------------------ consensus_14142#1 GNCTTNCACGTCTAGGTNTTTAGTCANGNCGGNAANNACCTAGCCNTNCGAC-------- 494 consensus_14142#0 ATATTTCCTTATCTGTAGTGGGATA 2597 consensus_14142#2 ------------------------- consensus_14142#3 ------------------------- consensus_14142#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||