These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1991 fasta sequence [CTCCCCTAAAACCCTAACCCCCCTTCCGCCGCCGCCCCCAAACCTCAACCCGCCGCCGCCGCCGACGCCGCCGGCGA-GATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCCGGCTACGGCCTCTTCCACGCCTACGGCATCGACGAGATCGGGCAGAGCGTGGACGCCGTCCGCGCCTCCGTCGTCGACCTCGACCGCTTCGGCAAGGCCGTCAAGCTCGCCGCCTTCACCCCCTTCTCCTCCGCCGTGGACGCCCTCAACCAGTGCAACGCCATCTCCGAAGGGATCATGACCGACGAGCTGAGGAGCTTCCTGGAGCTGAACCTGCCCAAGCCCAAGGAGGGGAAGAAGGCCAAGTAC-AGCCTCGGCGTCGTCGAGCCCAAGGTCGGCTCCCACATCTCCGAGGTCACCGGCATCCCGTGCCAGAGCAACGAGTTCGTCCAGGAGCTTCTCCGCGGCGTCCGCCTCCACTTCGACCGCTTCATCAGCGAGCTCAAGAAATCGGACTTGGAGAAGGCGCAGCTTGGCCTGGGTCATAGCTACAGCAGGGCGAAGGTGAAGTTCAATGTGAACCGCGTTGACAACATGGTGATTCAGGCTATCTTCCTGTTGGATACACTTGACAAGGACATCAATTCTTTCTCCATGAGAGTGAGGGAATGGTTTGGATGGCATTTTCCTGAGTTGGTCAAAATTGTCAATGACAACTACATCTATGCTAAGCTTGCTGATTATATAAAGGACAAATCTGAGTTGGCGGAAAAAGATATTTCGAAGTTAGCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCAATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC-TCCAGATACTT-GGTGC-TGAAAAGGCAC-TTTTCA-GGGCATTGAAAACTA-GGGGGAATAC-GCCAAAGTAT--GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA-ACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGC-TGGAGGAGGAGCCAC-AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG-AACGGTAC-TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA-GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTATCAATTTTGTGTGTGATAGATGCTCCGGAATTATTGGGAGCGAAGTATCGCTGCCGTTATAACAAAACTTCACTTGAAAAAAAAACCGCGGCCGCTAGCGG] [+] EMBL AK069305 [CTCCCCTAAAACCCTAACCCCCCTTCCGCCGCCGCCCCCAAACCTCAACCCGCCGCCGCCGCCGACGCCGCCGGCGA GATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCCGGCTACGGCCTCTTCCACGCCTACGGCATCGACGAGATCGGGCAGAGCGTGGACGCCGTCCGCGCCTCCGTCGTCGACCTCGACCGCTTCGGCAAGGCCGTCAAGCTCGCCGCCTTCACCCCCTTCTCCTCCGCCGTGGACGCCCTCAACCAGTGCAACGCCATCTCCGAAGGGATCATGACCGACGAGCTGAGGAGCTTCCTGGAGCTGAACCTGCCCAAGCCCAAGGAGGGGAAGAAGGCCAAGTAC AGCCTCGGCGTCGTCGAGCCCAAGGTCGGCTCCCACATCTCCGAGGTCACCGGCATCCCGTGCCAGAGCAACGAGTTCGTCCAGGAGCTTCTCCGCGGCGTCCGCCTCCACTTCGACCGCTTCATCAGCGAGCTCAAGAAATCGGACTTGGAGAAGGCGCAGCTTGGCCTGGGTCATAGCTACAGCAGGGCGAAGGTGAAGTTCAATGTGAACCGCGTTGACAACATGGTGATTCAGGCTATCTTCCTGTTGGATACACTTGACAAGGACATCAATTCTTTCTCCATGAGAGTGAGGGAATGGTTTGGATGGCATTTTCCTGAGTTGGTCAAAATTGTCAATGACAACTACATCTATGCTAAGCTTGCTGATTATATAAAGGACAAATCTGAGTTGGCGGAAAAAGATATTTCGAAGTTAGCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCAATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC TCCAGATACTT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGAAGAAGAAAAAGAAG ATAAGCACAAGC TGGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTC ] [+] EMBL AU091415 [ TAACCCCCCTTCCGCCGCCGCCCCCAAACCTCAACCCGCCGCCGCCGCCGACGCCGCCGG GANNATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCCGGCTACGGCCTCTTCCACGCCTACGGCATCGACGAGATCGGGCAGAGCGTGGACGCCGTCCGCGCCTCCGTCGTCGACCTCGACCGCTTCGGCAAGGCCGTCAAGCTCGCCGCCTTCACCCCCTTCTCCTCCGCCGTGGACGCCCTCAACCAGTGCAACGCCATCTCCGAAGGGATCATGACCGACGAGCTGAGGAGCTTCCTGGAGCTGAACCTGCCCAAGCCCAAGGAGGGGAAGAAGGCCAAGTACAAGCCTCGGCGTCGTCGAGCCCAAng ] [+] EMBL CA998972 [ AACCGCGTTGAC ACATGGTGATTCAGGCTATCTTCCTGTTGGATACACTTGACAAGGACATCAATTCTTTCTCCATGAGAGTGAGGGAATGGTTTGGATGGCATTTTCCTGAGTTGGTCAAAATTGTCAATGACAACTACATCTATGCTAAGCTTGCTGATTATATAAAGGACAAATCTGAGTTGGCGGAAAAAGATATTTCGAAGTTAGCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCAATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC TCCAGATACTT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAG ] [+] EMBL OSR32601A [ TTCGAAGTTAGCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCAATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTCTTCCAGATACTTGGGTGCTTGAAAAGGCACTTTTTCAGGGGCATTGAAAACTAGGGGGGGATACGGCCAAAGTATTGGGCCTT ] [+] EMBL CA998340 [ AGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC TCCAGATACTT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGAAGAAG AAAAGAAGAAG ] [+] EMBL CA767278 [ AGATGAATGATATTGCACCAAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC TCCAGATACTT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACCGCGAAGCAATGGACCTGGACAAGCCTTCCAATTTGGCTGATGAAGCTGA ] [+] EMBL AK059432 [ TT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGC TGGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTATCAATTTTGTGTGTGATAGATGCTCCGGAATTATTGGGAGCGAAGTATCGCTGCCGTTATAACAAAACTTCAC ] [+] EMBL C28523 [ AGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGTTGAAGCTGACGGCGAAG AATGGACCTGGNCAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGG ACTGAG AGAAG AAAAG AG AG AG ACAA N TGGAGGAGGAG CNC A GAGCAG ] [+] EMBL AU161388 [ TGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATNATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAG AATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGANGAAGAAAAAGAAGAAGAAGCACAAGCTTNGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG ACCGGTACTTCCCAAa ] [+] EMBL AK059026 [ GCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGC TGGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAA ] [+] EMBL BI801943 [ TCTAAAGCTGAAGCTGACCGCGAAGCCATGGACCTGGACAAGCCTTCC ATTTGGCTGATGAAGCTGAGCCTGGATACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGC TGGAGGAGGA CCACAAGGA CAGGAGAAGAGCGTGGCGCATGCCAATGGCGAC CCGAAGAGCAACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAACGAAAAAGAAGAAGTCCAAGACCGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCAT GCTGATCTTTCTGATTAGT TT TTGGAA CAGA TT AAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGACCAGTCCTGAACTACCCCCTT CCCTCCCATCCTCTTTCCCT ] [+] EMBL AU184650 [ CTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA NCTGAGAAGAAGAAAAAGAAGAAGAAGCCCAAGC TGGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAAATTGCCCTCCCATCCTCTTTCCCTCAaaaaaaaaa ] [+] EMBL AU225929 [ gcc gctAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGC TGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAAATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTATCAATTTTGTGTGTGATAGATGCTCCGGAATTATTGGGAGCGAATTATCGCTGCCGTTATAACAAAACTTCACTTGAAAAAAAAACCGCGGCCGCTAGCGG] consensusID : consensus_14147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1396 fasta sequence [TAACCTCCGAAGTCGCGCGGTCGCCGCCGCCGACGAACTTTGCGGCGGCGACGGCGCTGTACCTGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCGGGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCGTCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACGCCATCTCCGAAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCAAGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGTCCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGCTCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGCCAACTGACTTGGAAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGAACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATATCAATTCCTTCTCCATGAGAGTGAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCAAAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTGATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTGAAATTGTTGGAGGCTTGGAGCTCGGTTAATCTCTCATGCTGGCAGTCTTTCAAATCTTGCGAAGTGCGCTGCTTCCACTCTTCAAATTCTTGGCGCTGAAAAGGCACTTTTCAGAGCTCTGAAAACTCGTGGTAACACACCCAAGTATGGCCTCATATTCCACTCATCTTTTATTGGCCGTGCGTCAACTAGGAACAAGGGCAGAATAGCTCGATACCTGGCAAATAAATGTTCCATTGCCTCACGCATCGACTGTTATTCAGAGTTGAATACCTCAGTTTTCGGTCAGAAGCTGCGCGAACAAGTTGAGGAGAGACTAGACTTCTATGACAAGGGTATTGCACCGCGTAAGAACCTTGATGTGATGAAAGCTGCTATTAATGATATGACAAATGCCGTCTCAGAGGATGGTGGTGAAAAAGAGAAGAACGAC] [+] EMBL AK107041 [TAACCTCCGAAGTCGCGCGGTCGCCGCCGCCGACGAACTTTGCGGCGGCGACGGCGCTGTACCTGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCGGGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCGTCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACGCCATCTCCGAAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCAAGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGTCCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGCTCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGCCAACTGACTTGGAAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGAACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATATCAATTCCTTCTCCATGAGAGTGAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCAAAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTGATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTGAAATTGTTGGAGGCTTGGAGCTCGGTTAATCTCTCATGCTGGCAGTCTTTCAAATCTTGCGAAGTGCGCTGCTTCCACTCTTCAAATTCTTGGCGCTGAAAAGGCACTTTTCAGAGCTCTGAAAACTCGTGGTAACACACCCAAGTATGGCCTCATATTCCACTCATCTTTTATTGGCCGTGCGTCAACTAGGAACAAGGGCAGAATAGCTCGATACCTGGCAAATAAATGTTCCATTGCCTCACGCATCGACTGTTATTCAGAGTTGAATACCTCAGTTTTCGGTCAGAAGCTGCGCGAACAAGTTGAGGAGAGACTAGACTTCTATGACAAGGGTATTGCACCGCGTAAGAACCTTGATGTGATGAAAGCTGCTATTAATGATATGACAAATGCCGTCTCAGAGGATGGTGGTGAAAAAGAGAAGAACGAC] consensusID : consensus_14147#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [AGAGGACGAGACAAGGGGAGAAGAAAAAGAAGAAGTCCAAGACCGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGGCAAGAGCAGTCCTGAGCTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTTTCAAAAAAAAAAAA] [-] EMBL CA760754 [AGAGGACGAGACAAGGGGAGAAGAAAAAGAAGAAGTCCAAGACCGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGGCAAGAGCAGTCCTGAGCTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTTTCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14147#0 CTCCCCTAAAACCCTAACCCCCCTTCCGCCGCCGCCCCCAAACCTCAACCCGCCGCCGCC 60 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 GCCGACGCCGCCGGCGAGATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCCGGCTACGGC 120 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 CTCTTCCACGCCTACGGCATCGACGAGATCGGGCAGAGCGTGGACGCCGTCCGCGCCTCC 180 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 GTCGTCGACCTCGACCGCTTCGGCAAGGCCGTCAAGCTCGCCGCCTTCACCCCCTTCTCC 240 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 TCCGCCGTGGACGCCCTCAACCAGTGCAACGCCATCTCCGAAGGGATCATGACCGACGAG 300 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 CTGAGGAGCTTCCTGGAGCTGAACCTGCCCAAGCCCAAGGAGGGGAAGAAGGCCAAGTAC 360 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 AGCCTCGGCGTCGTCGAGCCCAAGGTCGGCTCCCACATCTCCGAGGTCACCGGCATCCCG 420 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 TGCCAGAGCAACGAGTTCGTCCAGGAGCTTCTCCGCGGCGTCCGCCTCCACTTCGACCGC 480 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 TTCATCAGCGAGCTCAAGAAATCGGACTTGGAGAAGGCGCAGCTTGGCCTGGGTCATAGC 540 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 TACAGCAGGGCGAAGGTGAAGTTCAATGTGAACCGCGTTGACAACATGGTGATTCAGGCT 600 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 ATCTTCCTGTTGGATACACTTGACAAGGACATCAATTCTTTCTCCATGAGAGTGAGGGAA 660 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 TGGTTTGGATGGCATTTTCCTGAGTTGGTCAAAATTGTCAATGACAACTACATCTATGCT 720 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ------------------------------------------------------------ consensus_14147#0 AAGCTTGCTGATTATATAAAGGACAAATCTGAGTTGGCGGAAAAAGATATTTCGAAGTTA 780 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ---------------------------------------------------------TAA 3 consensus_14147#0 GCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCA 840 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 CCTCCGAAGTCGCGCGGTCGCCGCCGCCGACGAACTTTGCGGCGGCGACGGCGCTGTACC 63 consensus_14147#0 ATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTC 900 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 TGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCG 123 consensus_14147#0 ATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGAT 960 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 GGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCG 183 consensus_14147#0 ATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCAT 1020 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 TCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACG 243 consensus_14147#0 GCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTCTCCAGATACTTGGTGCT 1080 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 CCATCTCCGAAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCA 303 consensus_14147#0 GAAAAGGCACTTTTCAGGGCATTGAAAACTAGGGGGAATACGCCAAAGTATGGCCTTATA 1140 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 AGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGT 363 consensus_14147#0 TTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATAT 1200 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 CCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGC 423 consensus_14147#0 CTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCA 1260 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 TCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGCCAACTGACTTGG 483 consensus_14147#0 GTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGT 1320 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 AAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGA 543 consensus_14147#0 GTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGAT 1380 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATA 603 consensus_14147#0 GCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAA 1440 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 TCAATTCCTTCTCCATGAGAGTGAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCA 663 consensus_14147#0 AAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTG 1500 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 AAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTG 723 consensus_14147#0 GCTGATGAAGCTGAGCCTGGAACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGCTGGAG 1560 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAA 783 consensus_14147#0 GAGGAGCCACAGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAGAAC 1620 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 AAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGCCAGGATCTTTCACCAGTTGATTTGA 843 consensus_14147#0 GGTACTCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAG 1680 consensus_14147#2 ----------------------------------------------------------AG 2 consensus_14147#1 TCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTT 903 consensus_14147#0 ACGGCCACTGAAGGGAAGAAGAAAAAGAAGAAGT-CCAAGACGGAGGACAGCGACTGAGT 1739 consensus_14147#2 AGGACGAGACAAGGGGAGAAGAAAAAGAAGAAGT-CCAAGACCGAGGACAGCGACTGAGT 61 consensus_14147#1 ATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTG 963 * * * * * * ** ** * **** * ** ** ** ** consensus_14147#0 GATCGGTTTGC--CTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGT 1797 consensus_14147#2 GATCGGTTTGC--CTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGT 119 consensus_14147#1 AAATTGTTGGAGGCTTGGAGCTCGGTTAATCTCTCATGCTGGCAGTCTTTCAAATCTTGC 1023 * *** * ** ** ** * **** ** * * * ** ** * consensus_14147#0 TAAAAAAAACACCTAGATTCCT--AGTTCCTGAAG--ACAAGAGCAGTCCT--GAACTAT 1851 consensus_14147#2 TAAAAAAAACACCTAGATTCCT--AGTTCCTGAAG--GCAAGAGCAGTCCT--GAGCTAT 173 consensus_14147#1 GAAGTGCGCTGCTTCCACTCTTCAAATTCTTGGCGCTGAAAAGGCACTTTTCAGAGCTCT 1083 ** * * * ** * * *** ** * ** *** * * ** ** * consensus_14147#0 GAAA--------TTGCCCTCCCA---------TCCTCTTTCCCTCATTCGATGTTA---- 1890 consensus_14147#2 GAAA--------TTGCCCTCCCA---------TCCTCTTTCCCTCATTCGATGTTT---- 212 consensus_14147#1 GAAAACTCGTGGTAACACACCCAAGTATGGCCTCATATTCCACTCATCTTTTATTGGCCG 1143 **** * * * **** ** * ** * ***** * ** consensus_14147#0 ----TCAATTTTGTGTGTGATAGATGCTCCGGAATTATTGGGAGCGAAGTATCGCTGCCG 1946 consensus_14147#2 ----TCAAAAAAAAAAAA------------------------------------------ 226 consensus_14147#1 TGCGTCAACTAGGAACAAGGGCAGAATAGCTCGATACCTGGCAAATAAATGTTCCATTGC 1203 **** consensus_14147#0 TTATAACAAAACTTCACTTGAAAAAAAAACCGCGGCCGCTAGCGG--------------- 1991 consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 CTCACGCATCGACTGTTATTCAGAGTTGAATACCTCAGTTTTCGGTCAGAAGCTGCGCGA 1263 consensus_14147#0 ------------------------------------------------------------ consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 ACAAGTTGAGGAGAGACTAGACTTCTATGACAAGGGTATTGCACCGCGTAAGAACCTTGA 1323 consensus_14147#0 ------------------------------------------------------------ consensus_14147#2 ------------------------------------------------------------ consensus_14147#1 TGTGATGAAAGCTGCTATTAATGATATGACAAATGCCGTCTCAGAGGATGGTGGTGAAAA 1383 consensus_14147#0 ------------- consensus_14147#2 ------------- consensus_14147#1 AGAGAAGAACGAC 1396 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||