These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1569 fasta sequence [TAGCCACTCGCTGCGCCTCCTCCTCATCGCCTCGCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACGCGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATATTGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATT] [+] EMBL AK071038 [TAGCCACTCGCTGCGCCTCCTCCTCATCGCCTCGCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACGCGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATATTGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATT] [-] EMBL CB619627 [ GATTTTGAAGACAGAAACAAAAATTATTGCCAGAGCAGATGTTGCAGAAGTTTTTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGAATTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTGGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAAGGGGTTCACACTATAATGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAAATTAGCTACATCCTTAAAggggtaaa ] consensusID : consensus_14155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1371 fasta sequence [TCCTCCTCATCGCCTC---GCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATC-AAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCAC-AATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGTGGTTTTCCAATTTCGGTAGCTAATGTTTGGTAGTGAGACCAGTGTCGATGTAAACTAAAATCTTTGTATGTATCTTTCTTTCAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGAAAAAAAAAA] [+] EMBL AK067116 [TCCTCCTCATCGCCTC GCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATC AAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCAC AATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGTGGTTTTCCAATTTCGGTAGCTAATGTTTGGTAGTGAGACCAGTGTCGATGTAAACTAAAATCTTTGTATGTATCTTTCTTTCAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGA ] [+] EMBL CB619626 [ CTCCTCCCTTCAAAGCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCGGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCCGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAAGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTGCCAGAGCAGATGTTG ] [+] EMBL OSS12936A [ CGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGG CAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCA ] [+] EMBL CB642330 [ GCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATT ] [+] EMBL CB642374 [ GCGGGCCCTTGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCATCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAAACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCAACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCACAGGAATCAAATAAATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGATGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAACAGACTCAAGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAG ] [+] EMBL CB642212 [ GCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAAGTTTAAGGCATTTGATCTGGCATCAAAAACCTG AGGTGAAAGAGTACCTACA ] [+] EMBL CB000961 [ GCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATC AAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCAC AATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGT ] [+] EMBL CB000560 [ GCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGT CAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATC AAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCAC AATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCCATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAG ] [+] EMBL AU032646 [ aacCGAGGCACAAATATTTGTGATGGANTAATATGAAGTGTGTATTNAGTGAGGAGGCTCCTGATGGANGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTNCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGTGGTTTTCCAATTTCGGTAGCTAATGTTTGGTAGTGAGACCAGTGTCGATGTAAACTAAAATCTTTGTATGTATCTTTCTTTCAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGAAAAAAAAAA] consensusID : consensus_14155#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 851 fasta sequence [AGCAGTACCTAGCAGACTCAGGTTTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAATGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATTTGTTCGTCTTCAAAAAAAAGA] [-] EMBL CB642331 [AGCAGTACCTAGCAGACTCAGGTTTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAATGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATTTGTTCGTCTTCAAAAAAAAGA] [-] EMBL CB642375 [ TGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTTCCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATGTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGCGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGCGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTGTGCTAATTATGGAAAACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCGCCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAATGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATTTGTTCGTCTT ] [-] EMBL CB642213 [ TGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAAGGGGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTTAAG GTATTCCTGGCACTTAAA ] consensusID : consensus_14155#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [TTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGG] [-] EMBL CA305702 [TTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14155#1 -----------------TCCTCCTCATCGCCTCGCCGTCGCCGGAGAAGACAACCATGAC 43 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 TAGCCACTCGCTGCGCCTCCTCCTCATCGCCTCGCCGTCGCCGGAGAAGACAACCATGAC 60 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 CACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCAC 103 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 CACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCAC 120 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 CGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGG 163 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 CGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGG 180 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 CCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAA 223 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 CCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAA 240 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 GAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAG 283 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 GAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAG 300 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 CAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAG 343 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 CAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAG 360 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 CATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAA 403 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 CATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAA 420 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 AATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGG 463 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 AATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGG 480 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 CTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAG 523 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 CTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAG 540 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 CATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCC 583 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 CATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCC 600 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 ACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCT 643 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 ACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCT 660 consensus_14155#2 --------------------------------------------------AGCAGTACCT 10 consensus_14155#1 AGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGG 703 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 AGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGG 720 consensus_14155#2 AGCAGACTCAGGTTTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGG 70 consensus_14155#1 TGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAAC 763 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 TGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAAC 780 consensus_14155#2 TGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAAC 130 consensus_14155#1 TATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAG 823 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 TATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAG 840 consensus_14155#2 TATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAG 190 consensus_14155#1 GTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTT 883 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 GTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTT 900 consensus_14155#2 GTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTT 250 consensus_14155#1 CAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGC 943 consensus_14155#3 ----------TTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGC 50 consensus_14155#0 CAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGC 960 consensus_14155#2 CAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGC 310 ************************************************** consensus_14155#1 ACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAG 1003 consensus_14155#3 ACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAG 110 consensus_14155#0 ACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAG 1020 consensus_14155#2 ACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAG 370 ************************************************************ consensus_14155#1 AGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAA 1063 consensus_14155#3 AGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGG-------------------- 150 consensus_14155#0 AGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAA 1080 consensus_14155#2 AGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAG--------------------- 409 *************************************** consensus_14155#1 ACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTG 1123 consensus_14155#3 -----------------------------------------------------TTCCTTG 157 consensus_14155#0 ACGCGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTG 1140 consensus_14155#2 ------------------------------------------------------------ consensus_14155#1 AGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATC 1183 consensus_14155#3 AGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATC 217 consensus_14155#0 AGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATC 1200 consensus_14155#2 --------AAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATC 461 **************************************************** consensus_14155#1 ATGTTGTCCCCATGAAATGAAGGTGGTTTTCCAATTTCGGTAGCTAATGTTTGGTAGTGA 1243 consensus_14155#3 ATGTTGTCCCCATGAAATGAAGGG----TTCAGATTGCTCCACCGTTTTTTGGGGGGATA 273 consensus_14155#0 ATGTTGTCCCCATGAAATGAAGGG----TTCAGATTGCTCCACCGTTTTTTGGGGGGATA 1256 consensus_14155#2 ATGTTGTCCCCATGAAATGAAGGG----TTCAGATTGCTCCACCGTTTTTTGGGGGGATA 517 *********************** *** *** * * * * ** ** * * consensus_14155#1 GACCAGTGTCGATGTAAACTAAAATCTTTGTATGTATCTTTCTTTCAGGGTTCAGATTGC 1303 consensus_14155#3 TTCTTGATGCAATATAAA--AAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGG--- 328 consensus_14155#0 TTCTTGATGCAATATAAAAAAAGGCGAATAT-TAGGGATGGCTTGATGATCTAAGGCTCC 1315 consensus_14155#2 TTCTTGATGCAATATAAAAAAAGGCGAATAT-TAGGGATGGCTTGATGATCTAAGGCTCC 576 * * * ** **** ** * * * * consensus_14155#1 TCCAC-CGTTTTTTGGGGGGATATTCTTGATG---CAATATAAAAAAAGGCGAA--TATT 1357 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 CGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTT 1375 consensus_14155#2 CGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTT 636 consensus_14155#1 AGGGAAAAAAAAAA---------------------------------------------- 1371 consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 AAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTG 1435 consensus_14155#2 AAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTG 696 consensus_14155#1 ------------------------------------------------------------ consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 GCATCAAGAATCTCCAATCAAGAACACGTTCACACTATATTGTGTCTAGCAGCAGCTAGC 1495 consensus_14155#2 GCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAATGTGTCTAGCAGCAGCTAGC 756 consensus_14155#1 ------------------------------------------------------------ consensus_14155#3 ------------------------------------------------------------ consensus_14155#0 ATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTG 1555 consensus_14155#2 ATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTG 816 consensus_14155#1 ----------------------------------- consensus_14155#3 ----------------------------------- consensus_14155#0 CTGGCACTTAAATT--------------------- 1569 consensus_14155#2 CTGGCACTTAAATTTGTTCGTCTTCAAAAAAAAGA 851 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||