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Oryza sativa
cluster # 14161 cluster # 14161       Sequences # 15       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14161#0 length = 1144 sequences # 12  
consensus_14161#1 length = 628 sequences # 2  
consensus_14161#2 length = 228 sequences # 1  

consensusID : consensus_14161#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1144
fasta sequence
                              [TTATCACCAAACGCCGGTCCGGATAACGTCCTCCTCCTCCCCTCGCCTCGCCACCTCGCTCACTACCTACCTCTCCACCAATGGCGACCACCACCACCACCACCATCTCCTCCTCCCTCATAACCCCTCCGGCCGCGGCCCTCCACCACCGCAGCAGCTCCTGCCGGTGCCCCTCCCGCCTCACCGTCGGGGCCGCGCGGTGGTGGGCGAGGCGCCGGCAGCCGGCGGTGGTGGTGCGGGTGGTCGCCTCCTCGTCGGTGCTCGAGGCGCCCGAGGAGGTGGCGGCGCGGAAGCTCTACGTCGGGAACATCCCCAGGACCGTCACCAACGACGAGCTCGCCGCCATGTTCGCCGACCACGGCACCGTCGA-GCGCGCCGAGGTTATGT-TTGACAAATACACTGGCCGGAGTAGGCGCTTCGGGTTTGTCACGATGAGCACACCGGAGGAGGCTAATGC-TGCAATTGAGAGCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCA-GTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACA-CCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAACTAA-ACAAATTT-TGTA-CGATAAC-AGCATA-TGTGAAGA-AATTTTATTGGTGTTCATATGAAGCATATATTATTTACCACCGT-ACCAGCATGTTTTTTTGTTTAATTAGTTGTGTAACATATTTGTTCAGTTGGATTGGAATGTATACTTGGCAGTCATCTCAGTGACAAAAAAAA]

[+] EMBL C74468               [TTATCACCAAACGCCGGTCCGGATAACGTCCTCCTCCTCCCCTCGCCTCGCCACCTCGCTCACTACCTACCTCTCCACCAATGGCGANCACCACCACCACCACCATCTCCTCCTCCCTCATAACCCCTCCGGCCGCGG CCTTCAACACCGCAGCAGCTCCTGCCGGTGCCCCTTCCG CTCACCGTCGGGGCCGCGCGGTGGTGGGCGAAGCGCCGGNAG CGGCGGTGGTGGTGCGGGTNGTCG CTCCTCGTCGGTGCTC AAGCGCCC AAGAGGTTGCGGCGNGGAA CTCTACGTTGGGGANAT CCCAGGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK067492             [  ATCACCAAACGCCGGTCCGGATAACGTCCTCCTCCTCCCCTCGCCTCGCCACCTCGCTCACTACCTACCTCTCCACCAATGGCGACCACCACCACCACCACCATCTCCTCCTCCCTCATAACCCCTCCGGCCGCGGCCCTCCACCACCGCAGCAGCTCCTGCCGGTGCCCCTCCCGCCTCACCGTCGGGGCCGCGCGGTGGTGGGCGAGGCGCCGGCAGCCGGCGGTGGTGGTGCGGGTGGTCGCCTCCTCGTCGGTGCTCGAGGCGCCCGAGGAGGTGGCGGCGCGGAAGCTCTACGTCGGGAACATCCCCAGGACCGTCACCAACGACGAGCTCGCCGCCATGTTCGCCGACCACGGCACCGTCGA GCGCGCCGAGGTTATGT TTGACAAATACACTGGCCGGAGTAGGCGCTTCGGGTTTGTCACGATGAGCACACCGGAGGAGGCTAATGC TGCAATTGAGAGCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCA GTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACA CCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAACTAA ACAAATTT TGTA CGATAAC AGCATA TGTGAAGA AATTTT                                                                                                                                    ]
[+] EMBL AK104715             [                                                  CCACCTCGCTCACTACCTACCTCTCCACCAATGGCGACCACCACCACCACCACCATCTCCTCCTCCCTCATAACCCCTCCGGCCGCGGCCCTCCACCACCGCAGCAGCTCCTGCCGGTGCCCCTCCCGCCTCACCGTCGGGGCCGCGCGGTGGTGGGCGAGGCGCCGGCAGCCGGCGGTGGTGGTGCGGGTGGTCGCCTCCTCGTCGGTGCTCGAGGCGCCCGAGGAGGTGGCGGCGCGGAAGCTCTACGTCGGGAACATCCCCAGGACCGTCACCAACGACGAGCTCGCCGCCATGTTCGCCGACCACGGCACCGTCGA GCGCGCCGAGGTTATGT TTGACAAATACACTGGCCGGAGTAGGCGCTTCGGGTTTGTCACGATGAGCACACCGGAGGAGGCTAATGC TGCAATTGAGAGCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCA GTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACA CCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAACTAA ACAAATTT TGTA CGATAAC AGCATA TGTGAAGA AATTTT                                                                                                                                    ]
[+] EMBL C28463               [                                                      CTCGCTCACTACCTACCTCTCCACCAATGGCGACCACCACCACCACCACCATCTCCTCCTCCCTCATAACCCCTCCGGCCGCGGCCCTCCACCACCGCAGCAGCTCCTGCCGGTGCCCCTCCCGCCTCACCGTCGGGGCCGCGCGGTGGTGGGCGAGGCGCCGGCAGCCGGCGGTGGTGGTGCGGGTGGTCGCCTCCTCGTCGGTGCTCGAGGCGCCCGAGGAGGTGGCGGCGCGGAANATCTACGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB642600             [                                                               TACCTACCTCTCCACCAATGGCGACCACCACCACCACCACCATCTCCTCCTCCCTCATAACCCCTCCGGCCGCGGCCCTCCACCACCGCAGCAGCTCCTGCCGGTGCCCCTCCCGCCTCACCGTCGGGGCCGCGCGGTGGTGGGCGAGGCGCCGGCAGCCGGCGGTGGTGGTGCGGGTGGTCGCCTCCTCGTCGGTGCTCGAGGCGCCCGAGGAGGTGGCGGCGCGGAAGCTCTACGTCGGGAACATCCCCAGGACCGTCACCAACGACGAGCTCGCCGCCATGTTCGCCGACCACGGCACCGTCGA GCGCGCCGAGGTTATGT TTGACAAATACACTGGCCGGAGTAGGCGCTTCGGGTTTGTCACGATGAGCACACCGGAGGAGGCTAATGC TGCAATTGAGAGCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTCTGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB683320             [                                                                                                                      CATAACCCCTCCGGCCGCGGCCCTCCACCACCGCAGCAGCTCCTGCCGGTGCCCCTCCCGCCTCACCGTCGGGGCCGCGCGGTGGTGGGCGAGGCGCCGGCAGCCGGCGGTGGTGGTGCGGGTGGTCGCCTCCTCGTCGGTGCTCGAGGCGCCCGAGGAGGTGGCGGCGCGGAAGCTCTACGTCGGGAACATCCCCAGGACCGTCACCAACGACGAGCTCGCCGCCATGTTCGCCGACCACGGCACCGTCGA GCGCGCCGAGGTTATGT TTGACAAATACACTGGCCGGAGTAGGCGCTTCGGGTTTGTCACGATGAGCACACCGGAGGAGGCTAATGC TGCAATTGAGAGCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCA GTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGT                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BI805506             [                                                                                                                                                                                                                                                                                                                                                                  gCCCCGGCACCGTCGATGCGCGCCGAGGTTATGTNTTGAC AATACCCT GCCGGAGTAGGCGCTTCGGGTTTGTCACGATGAGCACACCGGAGGAGGCTAATGCTTGCAATTGAGAGCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACCTTGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCC CCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCA GTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGC AAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACACCCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACCAAGTGGAAAGACCTTCC ATGC ATTTCACTTTGCAACTAA AC AATTT TGTA CGATAAC AGCATA TGTGAAGA AATTTTATTGGTGTTCAaaa                                                                                                                      ]
[+] EMBL OSS10709A            [                                                                                                                                                                                                                                                                                                                                                                             GTCGA GCGCGCCGAGGTTATGT TTGACAAATACACTGGCCGGAGTAGGCGNTNCGGGTTTGTCACGATGAGCACACCGGAGGAGGCTAATGC TGCAATTGAGAGCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTNACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB642601             [                                                                                                                                                                                                                                                                                                                                                                                                     TTGACAAATACACTGGCCGGAGTAGGCGCTTCGGGTTTGTCACGATGAGCACACCGGAGGAGGCTAATGC TGCAATTGAGAGCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTTTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCA GTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTCTGAGGGTGAAGTAACTTTGTGACCT CCTGTAGACTGAGGGAAACTTTAAGGGTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAAGTAAGACAAATTTCTGTAGAGATAGCGAGCATACTGTGAAGAGAATTTTATTGGTGTTCATATGAAGCATATATTATTTGCCTCCGTGGCCAGCAGAGATTTTGGTTTAATTAGTGGTGTCCAATATTGGTTCAGTAGGTAGGGAATG AACCTTGG                        ]
[+] EMBL AK062461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACACCGGAGGAGGCTAATGC TGCAATTGAGAGCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCA GTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACA CCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAACTAA ACAAATTT TGTA CGATAAC AGCATA TGTGAAGA AATTTTATTGGTATTCATATGAAGCATATATTATTTACCACCGT ACCAGCATGTTTTTTTGTTTAATTAGTTGTGTAACATATTTGTTCAGTTGGATTGGAATGTATACTTGGCAGT                    ]
[-] EMBL BI306147             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTTTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTGAGGCTGCA GTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATTTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTTTGAGGCTGAAGTAACTTTGTGAACA CCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAACTAA ACAAATTT TGTA CGATAAC AGCATA TGTGAAGA AATTTTATTGGTGTTCATATGAAGCATATATTATTTACCACCGT ACCAGCATGTTTTTTTGTTTAATTAGTTGTGTAACATATTTGTTCAGTTGGATTGGAATGTATACTTGGCAGTCATCTCAGTGAC        ]
[+] EMBL BM421693             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGT CCCCCGTGTCCCGGATTCCAGGAACTGCCAAGTCCAAGGGATAT GTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTGAGGCT CACGTTTCTACTTTCAACCATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCCAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACA CCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACCAAGTGGAAAGACCTTCCCATGCCATTTCACTTTGCAACTAA ACCAATTT TGTA CGATAAC AGCATA TGTGAAGA AATTTTATTGGTGTTCATATGAAGCATATATTATTTACCNCCGT ACCAGCATGTTTTTTTGTTTAATTAGTTGTGTAACATATTTGTTCAGTTGGATTGGAATGTATACTTGGCAGTCATCTC GTGAAAAAAAAAA]


>consensus_14161#0 TTATCACCAAACGCCGGTCCGGATAACGTCCTCCTCCTCCCCTCGCCTCGCCACCTCGCT CACTACCTACCTCTCCACCAATGGCGACCACCACCACCACCACCATCTCCTCCTCCCTCA TAACCCCTCCGGCCGCGGCCCTCCACCACCGCAGCAGCTCCTGCCGGTGCCCCTCCCGCC TCACCGTCGGGGCCGCGCGGTGGTGGGCGAGGCGCCGGCAGCCGGCGGTGGTGGTGCGGG TGGTCGCCTCCTCGTCGGTGCTCGAGGCGCCCGAGGAGGTGGCGGCGCGGAAGCTCTACG TCGGGAACATCCCCAGGACCGTCACCAACGACGAGCTCGCCGCCATGTTCGCCGACCACG GCACCGTCGAGCGCGCCGAGGTTATGTTTGACAAATACACTGGCCGGAGTAGGCGCTTCG GGTTTGTCACGATGAGCACACCGGAGGAGGCTAATGCTGCAATTGAGAGCCTGAATGAAA CTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTG ATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTG GTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAG AGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTT TTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCAGTTTCTACTTTCAACAATGCGG AATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGA CTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACACCTGTAGAC TGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTT CACTTTGCAACTAAACAAATTTTGTACGATAACAGCATATGTGAAGAAATTTTATTGGTG TTCATATGAAGCATATATTATTTACCACCGTACCAGCATGTTTTTTTGTTTAATTAGTTG TGTAACATATTTGTTCAGTTGGATTGGAATGTATACTTGGCAGTCATCTCAGTGACAAAA AAAA



consensusID : consensus_14161#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence
                              [ACCCCGGAGGAGGCTAATCNCTGCAATTGAGAGCCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGANCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGNCCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCAGTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATA-GGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACACCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAACTAAACAAATTTTGTACGATAACAGCATATGTGAAGAAATTTTATTGGTGTTCATATGAAGCATATATTATTTACCACCGTAAAAAAAAAAAA]

[+] EMBL AU092967             [ACCCCGGAGGAGGCTAATCNCTGCAATTGAGAGCCCTGAATGAAACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAGAACCAGANCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGNCCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCAGTTTCTACTTTCAACAATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATA GGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACACCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAACTAAACAAATTTTGTACGATAACAGCATATGTGAAGAAATTTTATTGGTGTTCATATGAAGCATATATTATTTACCACCGTAAAAAAAAAAAA]
[+] EMBL AU032541             [                                                                                                                                                                                                                                                                                                                                                                                       agGCTTAGGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACACCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAACTAAACAAATTTTGTACGATAACAGCATATGTGAAGAAATTTTATTGGTGTTCATATGAAGCATATATTATTTACCAC   AAAAAAAAAAA ]


>consensus_14161#1 ACCCCGGAGGAGGCTAATCNCTGCAATTGAGAGCCCTGAATGAAACTGAGGTCGGTGGTA GAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACATTGATCGGTCTGCACCAG AACCAGANCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGA GCGTGNCCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCA CCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGGTTTTGTCACCTTTTCTT CAGAGGAAGAAGTTCAGGCTGCAGTTTCTACTTTCAACAATGCGGAATTGGAAGGACAAC CCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAA GTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACACCTGTAGACTGAGGGAAACTTTAA GGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATGCAATTTCACTTTGCAACTAAA CAAATTTTGTACGATAACAGCATATGTGAAGAAATTTTATTGGTGTTCATATGAAGCATA TATTATTTACCACCGTAAAAAAAAAAAA



consensusID : consensus_14161#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence
                              [TGTTTTGTCACCTTTTCTTCAGAGGAAGAATTGAGCTCCAGTTTCTACTTTCAACCATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGCCATCTACCAGATATTTCCAGACTGGTTGATGCCAAGTGGGTACCTCTGAGCCTGAAGTAACTTTGTGAACACCCNTAGCCTCGAGGGAAACTTTAAGGCTAGATATTTGGCCACCAAGTGGAAAGAC]

[-] EMBL BM422192             [TGTTTTGTCACCTTTTCTTCAGAGGAAGAATTGAGCTCCAGTTTCTACTTTCAACCATGCGGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGCCATCTACCAGATATTTCCAGACTGGTTGATGCCAAGTGGGTACCTCTGAGCCTGAAGTAACTTTGTGAACACCCNTAGCCTCGAGGGAAACTTTAAGGCTAGATATTTGGCCACCAAGTGGAAAGAC]


>consensus_14161#2 TGTTTTGTCACCTTTTCTTCAGAGGAAGAATTGAGCTCCAGTTTCTACTTTCAACCATGC GGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGCCATCTACCAGATATTTCCA GACTGGTTGATGCCAAGTGGGTACCTCTGAGCCTGAAGTAACTTTGTGAACACCCNTAGC CTCGAGGGAAACTTTAAGGCTAGATATTTGGCCACCAAGTGGAAAGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14161#0      TTATCACCAAACGCCGGTCCGGATAACGTCCTCCTCCTCCCCTCGCCTCGCCACCTCGCT 60
consensus_14161#1      ------------------------------------------------------------
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      CACTACCTACCTCTCCACCAATGGCGACCACCACCACCACCACCATCTCCTCCTCCCTCA 120
consensus_14161#1      ------------------------------------------------------------
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      TAACCCCTCCGGCCGCGGCCCTCCACCACCGCAGCAGCTCCTGCCGGTGCCCCTCCCGCC 180
consensus_14161#1      ------------------------------------------------------------
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      TCACCGTCGGGGCCGCGCGGTGGTGGGCGAGGCGCCGGCAGCCGGCGGTGGTGGTGCGGG 240
consensus_14161#1      ------------------------------------------------------------
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      TGGTCGCCTCCTCGTCGGTGCTCGAGGCGCCCGAGGAGGTGGCGGCGCGGAAGCTCTACG 300
consensus_14161#1      ------------------------------------------------------------
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      TCGGGAACATCCCCAGGACCGTCACCAACGACGAGCTCGCCGCCATGTTCGCCGACCACG 360
consensus_14161#1      ------------------------------------------------------------
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      GCACCGTCGAGCGCGCCGAGGTTATGTTTGACAAATACACTGGCCGGAGTAGGCGCTTCG 420
consensus_14161#1      ------------------------------------------------------------
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      GGTTTGTCACGATGAGCACACCGGAGGAGGCTAAT-GCTGCAATTGAGAGCC-TGAATGA 478
consensus_14161#1      -----------------ACCCCGGAGGAGGCTAATCNCTGCAATTGAGAGCCCTGAATGA 43
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      AACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACAT 538
consensus_14161#1      AACTGAGGTCGGTGGTAGAAAAATTAAGGTTAATGTGACGGAGAGCTTCTTGCCTAACAT 103
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      TGATCGGTCTGCACCAGAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGT 598
consensus_14161#1      TGATCGGTCTGCACCAGAACCAGANCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGT 163
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      TGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGG 658
consensus_14161#1      TGGTAATCTTGCAAAGAGCGTGNCCACAGAGATGCTTAAAAACTTCTTCTCTGAAAAGGG 223
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      AGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGG 718
consensus_14161#1      AGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGATATGG 283
consensus_14161#2      ----------------------------------------------------------TG 2
                                                                                  *

consensus_14161#0      TTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCAGTTTCTACTTTCAACAATGC 778
consensus_14161#1      TTTTGTCACCTTTTCTTCAGAGGAAGAAGTTCAGGCTGCAGTTTCTACTTTCAACAATGC 343
consensus_14161#2      TTTTGTCACCTTTTCTTCAGAGGAAGAA--TTGAGCTCCAGTTTCTACTTTCAACCATGC 60
                       ****************************  *   *** ***************** ****

consensus_14161#0      GGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCA 838
consensus_14161#1      GGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCA 403
consensus_14161#2      GGAATTGGAAGGACAACCCATCCGTGTGAATAAAGCATAGCCATCTACCAGATATTTCCA 120
                       **************************************** ****** ************

consensus_14161#0      GACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACACCTGTAG 898
consensus_14161#1      GACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTGAAGTAACTTTGTGAACACCTGTAG 463
consensus_14161#2      GACTGGTTGATGCCAA-GTGGGTACCTCTGAGCCTGAAGTAACTTTGTGAACACCCNTAG 179
                       ************ *** *************** **********************  ***

consensus_14161#0      ACT-GAGGGAAACTTTAAGGCTAGATATTTG-CAACAAAGTGGAAAGACCTTCCAATGCA 956
consensus_14161#1      ACT-GAGGGAAACTTTAAGGCTAGATATTTG-CAACAAAGTGGAAAGACCTTCCAATGCA 521
consensus_14161#2      CCTCGAGGGAAACTTTAAGGCTAGATATTTGGCCACCAAGTGGAAAGAC----------- 228
                        ** *************************** * ** ************           

consensus_14161#0      ATTTCACTTTGCAACTAAACAAATTTTGTACGATAACAGCATATGTGAAGAAATTTTATT 1016
consensus_14161#1      ATTTCACTTTGCAACTAAACAAATTTTGTACGATAACAGCATATGTGAAGAAATTTTATT 581
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      GGTGTTCATATGAAGCATATATTATTTACCACCGTACCAGCATGTTTTTTTGTTTAATTA 1076
consensus_14161#1      GGTGTTCATATGAAGCATATATTATTTACCACCGTAAAAAAAAAAAA------------- 628
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      GTTGTGTAACATATTTGTTCAGTTGGATTGGAATGTATACTTGGCAGTCATCTCAGTGAC 1136
consensus_14161#1      ------------------------------------------------------------
consensus_14161#2      ------------------------------------------------------------
                                                                                   

consensus_14161#0      AAAAAAAA 1144
consensus_14161#1      --------
consensus_14161#2      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)