These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1771 fasta sequence [GTGAAAAAAAAAAAAAGCAAAAGCGGCGACGCCACACTAGCCAGCGGCGGAGGCGGTGGAGAGGAGAGGAGAGGGGAGAGGGGGGAAGCAAAGCGCGAGCGGCGATGGCGGCGAGGAGGAGCAGGGTGGCGTTCGTGCTGGTGGACGGGATCGGGGACGTGAGCATCCCGTCGCTCCGGGGGCGGACGCCGCTGGAGGCGGCGGCGGCGCCGGGGCTGGACGCGGTGGCGGCGGCCGGGGTGGCGGGGCTCATGGACCCCGTCGAGCCGGGGCTCGCCTGCGGGAGCGACACGGCGCACCTCTCCCTCCTCGGGTACGACCCCCGCGTGTACTACCGCGGCCGCGGCGCGTTCGAGTCCATGGGCGCCGGCCTCGCCATGGCCCCCGGCGACATCGCCTTCAAGTCAAACTTTGCTACGTTGGATGAAAGCACGGGGATCATTGTCAGCAGAAGGGCGGATCGACACTTTGAGGAGGAAGGCCCGATACTCTGTGCTGCATTGGATGGGTTGAAGCTCCCATCGTTTCCTGAATATGAAGTGAGAGTCAGATATGCTACTGAACACAGGTGTGGTGTGGTTGTGAAAGGACCGAGGCTGAGTGGGAACATTTCTGGAACTGATCCATTGAAGGACAACCGCTTGCATCTAAAGGCTGAACCTTTGGATGATTCAGAAGAAGCTAAAAACACGGCAGCTGTGGTCAATGAGCTTTCTAAGGAGATTACACGTATACTGGTGTCCCATCCTATCAATGCACAGCGCTCTGCCGAGGGGAAGAACATTGCAAATGTTGTGTTATTGCGAGGCTGTGGTATCCGG-ATTGAGGTTCCTGCCTTCGAAACCAAGCATGGACTTGCACCATGCATGGTGGCTCCTACAAAGATCATAGCTGGGCT-GGGGCTCTCACTGGGCATT-GATATCCTTGAAGCACCTGGAGCAACT-GGAGACTATCGAACTCTCTTGACTTCCAAAGCTAAAGCTATAGCCAAGGCACTG-TCTGCTCCTCTGGATACGCCACCTCGTGTTTTTGTGCCTGG-AGAGGATGAATATAAATCTGGAAAGGAAAATGGATATGACTTTGGGTTCTTGCACATAAAGGCCATCGATGATGCCGGTCATGATAAGGCTGTCAAGCTTAAGGTACTAGGCCTAGAGGCTGTTGATCGGGCTATCGTTCAGCTTGCAAGGCTCCTGTGGGAAGCTGAAAAGTCTGGGAAATACCAGTATTTCCTTTGTGTCACCGGAGACCACTCTACTCCAGTTGAGTACGGTGACCACAGTTTTGAACCCGTTCCTTTTGTGTTGTGCCGACTTAGAGATTTCGTAGGAGCTATGGGGGAGGACAATGTTATCAACTTCCCCCTGGACGATTTCCTGCTT-CCTTCAGTTAAATCTGGAGAAGATGTGGCAGAAAACATAGATGTAGCTGATCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGATTCTGTCTTTGAATTC-AACGAGATTGCCGCTGCAAGGGGCTG-CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTGCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGATCTTGAATCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTGTACATTTACCAAAAAAAAAA] [+] EMBL AK102566 [GTGAAAAAAAAAAAAAGCAAAAGCGGCGACGCCACACTAGCCAGCGGCGGAGGCGGTGGAGAGGAGAGGAGAGGGGAGAGGGGGGAAGCAAAGCGCGAGCGGCGATGGCGGCGAGGAGGAGCAGGGTGGCGTTCGTGCTGGTGGACGGGATCGGGGACGTGAGCATCCCGTCGCTCCGGGGGCGGACGCCGCTGGAGGCGGCGGCGGCGCCGGGGCTGGACGCGGTGGCGGCGGCCGGGGTGGCGGGGCTCATGGACCCCGTCGAGCCGGGGCTCGCCTGCGGGAGCGACACGGCGCACCTCTCCCTCCTCGGGTACGACCCCCGCGTGTACTACCGCGGCCGCGGCGCGTTCGAGTCCATGGGCGCCGGCCTCGCCATGGCCCCCGGCGACATCGCCTTCAAGTCAAACTTTGCTACGTTGGATGAAAGCACGGGGATCATTGTCAGCAGAAGGGCGGATCGACACTTTGAGGAGGAAGGCCCGATACTCTGTGCTGCATTGGATGGGTTGAAGCTCCCATCGTTTCCTGAATATGAAGTGAGAGTCAGATATGCTACTGAACACAGGTGTGGTGTGGTTGTGAAAGGACCGAGGCTGAGTGGGAACATTTCTGGAACTGATCCATTGAAGGACAACCGCTTGCATCTAAAGGCTGAACCTTTGGATGATTCAGAAGAAGCTAAAAACACGGCAGCTGTGGTCAATGAGCTTTCTAAGGAGATTACACGTATACTGGTGTCCCATCCTATCAATGCACAGCGCTCTGCCGAGGGGAAGAACATTGCAAATGTTGTGTTATTGCGAGGCTGTGGTATCCGG ATTGAGGTTCCTGCCTTCGAAACCAAGCATGGACTTGCACCATGCATGGTGGCTCCTACAAAGATCATAGCTGGGCT GGGGCTCTCACTGGGCATT GATATCCTTGAAGCACCTGGAGCAACT GGAGACTATCGAACTCTCTTGACTTCCAAAGCTAAAGCTATAGCCAAGGCACTG TCTGCTCCTCTGGATACGCCACCTCGTGTTTTTGTGCCTGG AGAGGATGAATATAAATCTGGAAAGGAAAATGGATATGACTTTGGGTTCTTGCACATAAAGGCCATCGATGATGCCGGTCATGATAAGGCTGTCAAGCTTAAGGTACTAGGCCTAGAGGCTGTTGATCGGGCTATCGTTCAGCTTGCAAGGCTCCTGTGGGAAGCTGAAAAGTCTGGGAAATACCAGTATTTCCTTTGTGTCACCGGAGACCACTCTACTCCAGTTGAGTACGGTGACCACAGTTTTGAACCCGTTCCTTTTGTGTTGTGCCGACTTAGAGATTTCGTAGGAGCTATGGGGGAGGACAATGTTATCAACTTCCCCCTGGACGATTTCCTGCTT CCTTCAGTTAAATCTGGAGAAGATGTGGCAGAAAACATAGATGTAGCTGATCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGATTCTGTCTTTGAATTC AACGAGATTGCCGCTGCAAGGGGCTG CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTGCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGATCTTGAATCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTG ] [+] EMBL CB645766 [ TGGCGCCTTTGAGGAGCAGGGTGGCGTTCGTGCTGGTGGACGGGATCGGGGACGTGAGCATCCCGTCGCTCCGGGGGCGGACGCCGCTGGAGGCGGCGGCGGCGCCGGGGCTGGACGCGGTGGCGGCGGCCGGGGTGGCGGGGCTCATGGACCCCGTCGAGCCGGGGCTCGCCTGCGGGAGCGACACGGCGCACCTCTCCCTCCTCGGGTACGACCCCCGCGTGTACTACCGCGGCCGCGGCGCGTTCGAGTCCATGGGCGCCGGCCTCGCCATGGCCCCCGGCGACATCGCCTTCAAGTCAAACTTTGCTACGTTGGATGAAAGCACGGGGATCATTGTCAGCAGAAGGGCGGATCGACACTTTGAGGAGGAAGGCCCGATACTCTGTGCTGCATTGGATGGGTTGAAGCTCCCATCGTTTCCTGAATATGAAGTGAGAGTCAGATATGCTACTGAACACAGGTGTGGTGTGGTTGTGAAAGGACCGAGGCTGAGTGGGAACATTTCTGGAACTGATCCATTGAAGGACAACCGCTTGCATCTAAAGGCTGAACCTTTGGATGATTCAGAAGAAGCTAAAAACACGGCAGCTGTGGTCAATGAGCTTTCTAAGGAGATTACACGTATACTGGTGTCCCATCCTATCAATGCACAGCGCTCTGCCGAGGGGAAGAACATTGCAAATGTTGTGTTATTGCGAGGCTGTGGTATCCGG ATTGAGGTTCCTGCCTTCGAAACCAAGCATGGACTTGCACCATGCATGGTGGCTCCTACAAAGATCATAGCTGG ] [+] EMBL AU181136 [ CGAGTCCATGGGCGCCGGCCTCGCCATGGCCCCCGGCGACATCG CTTCAAGTCAAACTTTGCTACGTTGGATGAAAGCACGGGGATCATTGTCAGCAGAAGGGCGGATCGACACTTTNAGGANGAAGGCCCGATACTCTGTGCTGCATTGGATGGGTTGAAGCTCCCATCGTTTCCTGAATATGAAGTGAGAGTCAGATATGCTACTGAACACAGGTGTGGTGTGGTTGTGAAAGGACCGAGGCTGAGTGGGAACATTTCTGGAACTGATCCATTGAAGGACAACCGCTTGCATCTAAAGGCTGAACCTTTGGATGATTCAGAAGAAGCTAAAAACACGGCAGCTGTGGTCAATGAGCTTTCTAAGGAGATTACACGTATACTGGTGTCCCATCCTATCAATGCACAGCGCTCTGCCGAGGGGAAGAACATTGCAAATGTTGTG ] [+] EMBL AU093439 [ GAGTCCATGGGCGCCGGCCTCGCCATGGCCCCCGGCGACATCGCCTTCAAGTCAAACTTTGCTACGTTGGATGAAAGCACGGGGATCATTGTCAGCAGAAGGGCGGATCGACACTTTGAGGAGGAAGGCCCGATACTCTGTGCTGCATTGGATGGGTTGAAGCTCCCATCGTTTCCTGAATATGAAGTGAGAGTCAGATATGCTACTGAACACAGGTGTGGTGTGGTTGTGAAAGGACCGAGGCTGAGTGGGAACATTTCTGGAACTGATCCATTGAAGGACAACCGCTTGCATCTAAAGGCTGAACCTTTGGATGATTCAGAAGAAGCTAAAAACACGGCAGCTGTGGTCAATGAGCTTTCTAAGGAGATTACACGTATACTGGTGTCCCATCCTATCAATGCACAGCGCTCTGCCGAGGGGAAGAACATTGCAAATGTTGTGTTATTGCGAGGCTGTGGTATCCGGNATTGAGGTTCCTGCCTTCGAAACCAAGCATGGACTTGCACCATGCATGGTGGCTCCTACAAAGATCATAGCTGGGCT GGGGCTCTCACTGGGCATTNGATA ] [-] EMBL AU092472 [ AGTCCATGGGCGCCGGCCTCGCCATGGCCCCCGGCGACATCGCCTTCAAGTCAAACTTTGCTACGTTGGATGAAAGCACGGGGATCATTGTCAGCAGAAGGGCGGATCGACACTTTGAGGAGGAAGGCCCGATACTCTGTGCTGCATTGGATGGGTTGAAGCTCCCATCGTTTCCTGAATATGAAGTGAGAGTCAGATATGCTACTGAACACAGGTGTGGTGTGGTTGTGAAAGGACCGAGGCTGAGTGGGAACATTTCTGGAACTGATCCATTGAAGGACAACCGCTTGCATCTAAAGGCTGAACCTTTGGATGATTCAGAAGAAGCTAAAAACACGGCAGCTGTGGTCAATGAGCTTTCTAAGGAGATTACACGTATACTGGTGTCCCATCCTATCAATGCACAGCGCTCTGCCGAGGGGAAGAACATTGCAAATGTTGTGTTATTGCGAGGCTGTGGTATCCGG ATTGAGGTTCCTGCCTTCGAAACCAAGCATGGACTTGCACCATGCATGGTGGCTCCTACAAAGATCATAGCTGGGCTGGGGGCTCTCACTGGGCCAT GATATCC TGAAGCACCTGGAGCAACTGGGAGACTATCGAACTCTCTTGACTTCCAAAGCTAAAGCTATAGCCAAGGCACTGTTCTGCTCCTCTGGATACGCCA CTCGTGTTTTTGTGCCTGGAAGAGG ] [-] EMBL CB645767 [ CAACT GGAGACTATCGAACTCTCTTGACTTCCAAAGCTAAAGCTATAGCCAAGGCACTG TCTGCTCCTCTGGATACGCCACCTCGTGTTTTTGTGCCTGG AGAGGATGAATATAAATCTGGAAAGGAAAATGGATATGACTTTGGGTTCTTGCACATAAAGGCCATCGATGATGCCGGTCATGATAAGGCTGTCAAGCTTAAGGTACTAGGCCTAGAGGCTGTTGATCGGGCTATCGTTCAGCTTGCAAGGCTCCTGTGGGAAGCTGAAAAGTCTGGGAAATACCAGTATTTCCTTTGTGTCACCGGAGACCACTCTACTCCAGTTGAGTACGGTGACCACAGTTTTGAACCCGTTCCTTTTGTGTTGTGCCGACTTAGAGATTTCGTAGGAGCTATGGGGGAGGACAATGTTATCAACTTCCCCCTGGACGATTTCCTGCTT CCTTCAGTTAAATCTGGAGAAGATGTGGCAGAAAACATAGATGTAGCTGATCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGATTCTGTCTTTGAATTC AACGAGATTGCCGCTGCAAGGGGCTG CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTGCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGATCTTGAATCTTGCAAAAAAAAagg ] [-] EMBL AU092471 [ TTCGTAGGAGCTTTGGGGGAGGAC ATGTTATCAACTT CCCCTGGACGATTTCNGCCTT CCTTCAGTTAAATCTGGAGAAGATNTGGCAGAANACATAGATGTAGCTGATCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGATTCTGTCTTTGAATTC AACGAGATTGCCGCTGCAAGGGGCTGCCCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTGCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGG ] [+] EMBL AU033079 [ TGCTTCCCTTCAGTTAAACCTGGAGAAGATGTGGCAGAAAACATAGATGTAGCTGATCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGATTCTGNCTTTGAATTC AACGAGANTGCCGCTGCAAGGGGCTG CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTGCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATNAATAAGGCTTCTCATGGATCTTGAANCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTGTACATTTACCAAAAA ] [+] EMBL AU181135 [ ATGTGGCAGAAAACATAGATGTAGCTGATCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGATTCTGTCTTTGAANTC AACGAGATTGCCGCTGCAAGGGGCTG CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTGCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGANCTTGAANCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTGTACATTTACCAAAAA ] [+] EMBL OSC6341 [ ATGTGGCAGAAAACATAGATGTAGCTGACCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGANTCTGTCTTTGAATTC AACGAGATTGCCGCTGCAAGGGGCTG CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTGCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGATCTTGAANCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTGTACATTTACCAAAAA ] [+] EMBL BI799859 [ GATGTAGCTGATCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGATTCTGTCTTTGAATTC AACGAGATTGCCGCTGCAAGGGGCTG CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTCCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAACCAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGATCTTGAATCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTGTACATTTACCAAAAAAAAAA] [+] EMBL BI799169 [ GATGTAGCTGATCGCAAGTCTGATCAGCGC AAGCTTTCAGTGGCGATTCTGTCTTTGAATTC AACGAGATTGCCGCTGCAAGGGGCTG CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTCCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGATCTTGAATCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTGTACATTTACCAAAAAAAAAA] [+] EMBL BI799278 [ GATGTAGCTGATCGCAAGTCTGATCAGCGC AAGCTTTCAGTGGCGATTCTGTCTTTGAATTC AACGAGATTGCCGCTGCAAGGGGCTG CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATC AAGCGAAGAACGATTAGTCCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGATCTTGAATCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTGTACATTTACCAAAAAAAAAA] [+] EMBL AU033127 [ TTNCAGTGGCGATTCTGTCTTTGAATTCAAACGAGATTGCCGCTGCAAGGGGCTG CCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCNAGAAGTTCATCAAAGCGAAGANCGATTAGTGCCAGTTCAACATACTGACGTTTGTGTAAACTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGANCTTGAATCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTGTACATTTNCCnana ] [+] EMBL AU161677 [ GGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCANCAAANCGAAGAACGATTAGTGCCAGTTCNACATACTGACGTTTGTGTAANCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGANCTTGAANCTTGCACTGAAAANCATAAATAANCTGACCTGCTGTGTACATTTACCAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||