These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 806 fasta sequence [CTCTCTCTCTCTCTCCCCCATCTCCATGCCGCCATAAGTATCAGCAGCATCGCACCCGGAATCGGAATCCCCAAACCCAACACCATCACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTG-GGGGGCGTGGGGAGCCGGCTACGGCGG-CGCCGGA-GG-ACACGAGATG-GCGCGGCCGTCGACGG-TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC-TGCCCGGAAAAGTGC-TTCAAGTCC-TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC-GGCGGCGGCGGCGGGTGCAGCTTCGA-TTGCAACAAG-TGCG-AGGCCACCTGCTAATTAATCAAACCGAA-TGATCCATGGA-TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG-TTGAATTAATCG-TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC-TGAATGGAA-TGGAATGTAATGAAATA-TATTTTGG-TGAGCTGCGAGAGTC-TGTAAGTATT-CAGGTGTGTGTG-TGGTGTTC-TTGATGATAATGATGAA-TAAAACGAGAGGAATTCATCGATTAAAAAAAAATAAAAAAAAAA] [+] EMBL CA758614 [CTCTCTCTCTCTCTCCCCCATCTCCATGCCGCCATAAGTATCAGCAGCATCGCACCCGGAATCGGAATCCCCAAACCCAACACCATCACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCTGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGA ] [+] EMBL AK121537 [ CAAACCCAACCCCATCACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTG GGGGGCGTGGGGAGCCGGCTACGGCGG CGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC TGCCCGGAAAAGTGC TTCAAGTCC TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC GGCGGCGGCGGCGGGTGCAGCTTCGA TTGCAACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAG ] [+] EMBL C26908 [ ATCACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGANATCCATGGCGACG CGCCGCCCAANACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTNATCCTCGTNTCGGCCACCGCNTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGNGGAGGAGGAGGNGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTG GGGGGCGTGGGGAGCCGGCTACGNGTC CGCCG ] [+] EMBL AU071072 [ CACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTG GGGGGCGTGGGGAGCCGGCTACGGCGGNCGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACCTTGCCCGGAAAAGTGCTTTCAAGTCCTTTCAGCTTCAAGGACAAGCACGGCGGCGGCGGCGGGCGGCGGCGGCGGGTGCAGCTTCGATTTGCAACAAGTTGCGAAGGCCACCTGCTAATTAATCAAACCGAATTGATCCATGGATTGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATNGATGTGTAT GTATGGGGTGTTTGAATTAATCG TCATTTATTAGAGTTTTGTTAATTAGCTACTTACTTGAATGGAATTGGAATTTAANTNAATATTATTTTGGTTAAGCTGCGAAAATCTTGTAAGTATTCCAGGTGTGTGTGTTGGTGTTCTTTAATAATAATGATTAANTAAAACGA ] [+] EMBL C27406 [ CCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACG CGCCGCCCAAGACCCTCCTCCTGCTCNTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTC GNCCGCC GGGGGAG GGTTGNGGGGGCGTNGGGAGCCGGCTAC G CGCCGGATGGAACACGAGATGNGCGCGG CGTCGACGG TGTtc ] [+] EMBL OSS2209A [ CCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTN GGGGGCGTGGGGAGCCGGCTACGNGNN NGNCGGA GG ACACGAGATG GCGCGGCCGTCGACGGTTNTGCATTGAGAAGGGCGnttc ] [+] EMBL C27607 [ nCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATNGCGACG CNCCNCCCAAGACCCTNCTCCTTCTCGTCCTCGNGCTATCCGTCATCCTCGTCTCNGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTNGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGG ] [+] EMBL AU101706 [ GGCGG CGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC TGCCCGGAAAAGTGC TTCAAGTCC TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC GGCGGCGGCGGCGGGTGCAGCTTCGA TTGCAACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGATTAAAAAAA ] [+] EMBL AU092579 [ GGCGG CGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC TGCCCGGAAAAGTGC TTCAAGTCC TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC GGCGGCGGCGGCGGGTGCAGCTTCGA TTGCAACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGA AAAAAA ] [+] EMBL AU108727 [ GCGG CGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC TGCCCGGAAAAGTGC TTCAAGTCC TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC GGCGGCGGCGGCGGGTGCAGCTTCGA TTGCAACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGA AAAA ] [+] EMBL D42677 [ TGCAACAAG TGCG AGG CACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGNCGAAGAATCGATNNCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGG A TGGAATGTAAT AAATA TATTTTNG TNAGCTGCGAGAGTC TGTAAGTATT CAGGNGTGTGTG TGGTNTNC TTNATGATAA ] [+] EMBL AU108894 [ GCNACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGATTCAAAAAAAA ] [+] EMBL BI802093 [ ATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCGCTCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGGAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGT TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGATTCTTTGACCGTAAAAAAAAAA] consensusID : consensus_14204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGGCGGCGGCGGCGGCGGGTGCAGCTTCGATTGCAACAAGTGCGAGGCCACCTGCTAATTAATCAAACCGAATGATCCATGGATGGCGAAGAATCGATGGCCCTCTCTACTGAAACTATGGATGGTATGGTATGGGGTGTTGAATTAATCGTCAGTANTAAGAGTTTTGTTAATTAGCTACTTACTGAATGGAATGGAATGTAATGAAATATATTTTGGTGAGCTGCGAGAGTCTGTAAGTATTCAGGTGTGTGTGTGGTGTTCTTGATGATAATGATGAATAAAACGAGAGTTATTCCC] [-] EMBL CF306034 [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGGCGGCGGCGGCGGCGGGTGCAGCTTCGATTGCAACAAGTGCGAGGCCACCTGCTAATTAATCAAACCGAATGATCCATGGATGGCGAAGAATCGATGGCCCTCTCTACTGAAACTATGGATGGTATGGTATGGGGTGTTGAATTAATCGTCAGTANTAAGAGTTTTGTTAATTAGCTACTTACTGAATGGAATGGAATGTAATGAAATATATTTTGGTGAGCTGCGAGAGTCTGTAAGTATTCAGGTGTGTGTGTGGTGTTCTTGATGATAATGATGAATAAAACGAGAGTTATTCCC] consensusID : consensus_14204#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [CGTCATCCTCGTNTCGGCCACCGCGTTCCACCACCACCACCACCACGNCGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGNGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGNGTGTGGGGGGCGTGGGGAGCCGNCTACGCGAACGCCGTAGGACACGAGATGGCGCGGNCGTCGACGNTTGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGTNTCACCTNCCCGGAAAAGTGCTTCAAGTCCTTCAGCTTCAAGGACAAGCACGGNGNCGGCGGNGNCGACGNCGTN] [+] EMBL OSC19761 [CGTCATCCTCGTNTCGGCCACCGCGTTCCACCACCACCACCACCACGNCGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGNGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGNGTGTGGGGGGCGTGGGGAGCCGNCTACGCGAACGCCGTAGGACACGAGATGGCGCGGNCGTCGACGNTTGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGTNTCACCTNCCCGGAAAAGTGCTTCAAGTCCTTCAGCTTCAAGGACAAGCACGGNGNCGGCGGNGNCGACGNCGTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14204#0 CTCTCTCTCTCTCTCCCCCATCTCCATGCCGCCATAAGTATCAGCAGCATCGCACCCGGA 60 consensus_14204#2 ------------------------------------------------------------ consensus_14204#1 ------------------------------------------------------------ consensus_14204#0 ATCGGAATCCCCAAACCCAACACCATCACCCCCCAACAACAAGAGATCATCGAAGCCCCA 120 consensus_14204#2 ------------------------------------------------------------ consensus_14204#1 ------------------------------------------------------------ consensus_14204#0 ACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTC 180 consensus_14204#2 ------------------------------------------------------------ consensus_14204#1 ------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 42 consensus_14204#0 GCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGA 240 consensus_14204#2 --------CGTCATCCTCGTNTCGGCCACCGCGTTCCACCACCACCACCACCACGNCGGA 52 consensus_14204#1 TCTCTCTCTCTCTCTCTCTCTCCAACAACAAGAGATCATCGAAGCC-CCAACAAGTCGCA 101 ** *** * * ** ** * ** *** ** * ** * consensus_14204#0 GGA-GCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGC---GGGTTC------TTCGAGGT 290 consensus_14204#2 GGA-GCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGC---GNGTTC------TTCGAGGT 102 consensus_14204#1 TGACATCCATGGCGGCGGCGGCGGCGGCGGGTGCAGCTTCGATTGCAACAAGTGCGAGGC 161 ** * * * ** ** ** ** ** *** * ** * * * * ***** consensus_14204#0 GCCGTGGT--TCGGCCCGCCGGGGGGAGGCGGG--TGG-GGGGCGTGGGGAGCCGGCTAC 345 consensus_14204#2 GCCGTGGT--TCGGCCCGCCGGGGGGAGGNGTG--TGG-GGGGCGTGGGGAGCCGNCTAC 157 consensus_14204#1 CACCTGCTAATTAATCAAACCGAATGATCCATGGATGGCGAAGAATCGATGGCCCTCTCT 221 * ** * * * * * ** * *** * * * * *** ** consensus_14204#0 GGCGGCGCCGGAG--GACACGAGATGGCGCG--------GCCGTCGACGGT--GTGCATG 393 consensus_14204#2 GCGAACGCCGTAG--GACACGAGATGGCGCG--------GNCGTCGACGNTT-GTGCATG 206 consensus_14204#1 ACTGAAACTATGGATGGTATGGTATGGGGTGTTGAATTAATCGTCAGTANTAAGAGTTTT 281 * * * * * **** * * **** * * * * consensus_14204#0 GAGAA--GGGCGCCTGCTACAAGAAGCG--------GCTCACCTGCCCGGAAAAGTGCTT 443 consensus_14204#2 GAGAA--GGGCGCCTGCTACAAGAAGCG--------TNTCACCTNCCCGGAAAAGTGCTT 256 consensus_14204#1 GTTAATTAGCTACTTACTGAATGGAATGGAATGTAATGAAATATATTTTGGTGAGCTGCG 341 * ** * * * ** * * * * * * * ** consensus_14204#0 CAAGTCCTTCAGC-TTCAAGGACAAGCACGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCA 502 consensus_14204#2 CAAGTCCTTCAGC-TTCAAGGACAAGCACGGNGNCGGCGGNGNCGACGNCGTN------- 308 consensus_14204#1 AGAGTCTGTAAGTATTCAGGTGTGTGTGTGGTGTTCTTGATGATAATGATGAATAAAACG 401 **** * ** **** * * ** * * * * * consensus_14204#0 GCTTCGATTGCAACAAGTGCGAGGCCACCTGCTAATTAATCAAACCGAATGATCCATGGA 562 consensus_14204#2 ------------------------------------------------------------ consensus_14204#1 AGAGTTATTCCC------------------------------------------------ 413 consensus_14204#0 TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTGTT 622 consensus_14204#2 ------------------------------------------------------------ consensus_14204#1 ------------------------------------------------------------ consensus_14204#0 GAATTAATCGTCAGTTATTAGAGTTTTGTTAATTAGCTACTTACTGAATGGAATGGAATG 682 consensus_14204#2 ------------------------------------------------------------ consensus_14204#1 ------------------------------------------------------------ consensus_14204#0 TAATGAAATATATTTTGGTGAGCTGCGAGAGTCTGTAAGTATTCAGGTGTGTGTGTGGTG 742 consensus_14204#2 ------------------------------------------------------------ consensus_14204#1 ------------------------------------------------------------ consensus_14204#0 TTCTTGATGATAATGATGAATAAAACGAGAGGAATTCATCGATTAAAAAAAAATAAAAAA 802 consensus_14204#2 ------------------------------------------------------------ consensus_14204#1 ------------------------------------------------------------ consensus_14204#0 AAAA 806 consensus_14204#2 ---- consensus_14204#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||