These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1814 fasta sequence [CTAGTGGGCTTTACACAGCCAAATAATTCAGATTACCGTAAAACCTCCGCCCCCAGCTAGCGGGCTGGTGTTTCCTCCGCCGCCGCCGCCGCAAATGGAGGCCCTCCTCCGGTGGGCGGCGGAGCTGGGCGTCTCCGACTCCCCGTCCGCGCCCTCCCCCTCCTCCTGCCTCGGCCGCTCCGTCCTCATCGCCGACTTCCCCGACGCCGGCGGGAGGGGCTTGGCGGCGGCGCGGGACCTCCGGCGCGGCGAGCTGGTGCTGCGGGCGCCGCGCGCCGCCCTGCTCACCAGCGGCCGCGTCATGGACGATGACCCCAGGATCGCCTCCTCCGTCGCCAGCCACCTCCCCCGCCTCCCCTCCGTCCAGACCCTGATCATATGTTTGTTGTCTGAAGTGGGAAAAGGGAAGAGTTCAAATTGGTATCTATATTTGTCTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTTTGAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGC-TTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATC-TTCAAGAACATTGCATATAGCATGGGA-TGATGCT-GGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATGCTGCTCCTAATGATGACAATTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAAGATGTTGGACCAGACAGATTTTGATTCATCTGAGAAGTTGACAGATGGGGGATATG-AAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT-CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT-AATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAACAGCATGTCAAATTGTCAACACTCGATAGCAGGGCGAGGTGCTTTCATAGTTCCATGCATCACACTTTTTGGGGTTGCATAGTTTAAGCATAACAAGCGTTCTGTGGAATGCCTTCTGTGGAATGCCGCTGAGATACTGATAATTGATTA] [+] EMBL AK103840 [CTAGTGGGCTTTACACAGCCAAATAATTCAGATTACCGTAAAACCTCCGCCCCCAGCTAGCGGGCTGGTGTTTCCTCCGCCGCCGCCGCCGCAAATGGAGGCCCTCCTCCGGTGGGCGGCGGAGCTGGGCGTCTCCGACTCCCCGTCCGCGCCCTCCCCCTCCTCCTGCCTCGGCCGCTCCGTCCTCATCGCCGACTTCCCCGACGCCGGCGGGAGGGGCTTGGCGGCGGCGCGGGACCTCCGGCGCGGCGAGCTGGTGCTGCGGGCGCCGCGCGCCGCCCTGCTCACCAGCGGCCGCGTCATGGACGATGACCCCAGGATCGCCTCCTCCGTCGCCAGCCACCTCCCCCGCCTCCCCTCCGTCCAGACCCTGATCATATGTTTGTTGTCTGAAGTGGGAAAAGGGAAGAGTTCAAATTGGTATCTATATTTGTCTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTTTGAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGC TTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATC TTCAAGAACATTGCATATAGCATGGGA TGATGCT GGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATGCTGCTCCTAATGATGACAATTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAAGATGTTGGACCAGACAGATTTTGATTCATCTGAGAAGTTGACAGATGGGGGATATG AAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT AATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAACAGCATGTCAAATTGTCAACACTCGATAGCAGGGCGAGGTGCTTTCATAGTTCCATGCATCACACTTTTTGGGGTTGCATAGTTTAAGCATAACAAGCGTTCTGTGGAATGCCTTCTGTGGAATGCCGCTGAGATACTGATAATTGATTA] [+] EMBL CF310938 [ CCCTGATCATATGTTTGTTGTCTGAGGTGGGAAAAGGGAAGAGTTCAAATTGGTATCTATATTTGTCTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTTTGAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATC TTCAAGAACATTGCATATAGCATGGGA TGATGCT GGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATGCTGCTCCTAATGATGACGATTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAAGATGTTGGACCAGACAGATTTTGATTCATCTGAGAAGTTGACAGATGGGGGATATGAAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAA ] [+] EMBL C27514 [ AAGAGTTCAAATTGGTATCTATATTTGTNTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTTTAAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTTCANGANCATTGCATATAGCATGGGATTGATGCTGGGTNGTCTATGTCCTATTGGGGNTTTGTc ] [-] EMBL CB650628 [ AGAAAAGGAGAGCAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAACCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTTTTTAGGATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT AATTAT TTTTTTTTATACGGAAGTTCTTGATACATTTTTG ] [-] EMBL CB619011 [ CTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAAAAAAAAAAAAAAGA ] [-] EMBL CB649655 [ TTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT AATTATGTTTTTTTAATGCAGAAG ] [-] EMBL CB649654 [ GTTTTCTTTTGGGTGAGAACCTTAATGAGAAAATTTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGTTCCATTCTTCAGATTTCATGGTTTCAAGCTGGATTGTTTTATACACAGTAAACTCCCAGTTCGTTTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAATTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTTGTTGCAACAAAATCAACAATAGttna ] [-] EMBL CB618898 [ TTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAAGGCA ] [-] EMBL CF310469 [ GCTGTGTGCATTAAGGCTTTGGACAACTCCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCACTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCTNAATTATGTTTTTTTAATGCAGAAaaaaaa ] [-] EMBL CF310939 [ ATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACAAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT AATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAACAGCATGTCAAATTGTCAACACTCGATAGCAaaaaa ] consensusID : consensus_14217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1259 fasta sequence [TTTCAGGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTCAAGAACATTGCATATAGCATGGGATGATGCTGGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATACTGCTCCTAATGATGACAACTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAGGATGTTGGACCAGACAGATTTTGATTCATCCGAGAAGTTGACAGATGGGGGATATGAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTTTCTTCTGATATTTGCCTAAAATATATGCCCTTTTTTGTCTATAGGATGCTCATGTTCTCCCGTATCACATTATCTGCCTTCTTGTTGTTCTGTACTTTTGAATTAAACTTTGTCCTTTCGTACAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTTTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTTTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAACCTTTGAGCAAGAATTTGCTCCATTTTTCAGATTTCATGGCTTCAAGCTGGATTGTTTTATACACAGTAAACTCCCAGTTCGTTTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATCACCGGAGGAGG] [+] EMBL CF310468 [TTTCAGGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTCAAGAACATTGCATATAGCATGGGATGATGCTGGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATACTGCTCCTAATGATGACAACTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAGGATGTTGGACCAGACAGATTTTGATTCATCCGAGAAGTTGACAGATGGGGGATATGAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTTTCTTCTGATATTTGCCTAAAATATATGCCCTTTTTTGTCTATAGGATGCTCATGTTCTCCCGTATCACATTATCTGCCTTCTTGTTGTTCTGTACTTTTGAATTAAACTTTGTCCTTTCGTACAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAAT ] [-] EMBL CB618974 [ TCCTTTCGTACAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACA ] [-] EMBL CB645791 [ AACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATAATCGGTTTTTGGCCAAGAGATTCCTTGTATATTTTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTTTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAACCTTTGAGCAAGAATTTGCTCCATTTTTCAGATTTCATGGCTTCAAGCTGGATTGTTTTATACACAGTAAACTCCCAGTTCGTTTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGGGGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATCACCGGAGGAGG] [-] EMBL CB650627 [ CCAAGAGATTCTTTGTATATTTTGCCAAATGGAAATCCTTCATTTGCATTGCTGTGTGCATTAAGGTTTTGGACAACTTCCAGAAATTGTCGGAAAGCCTTAAGTCATCAGATTTACTCTGGATCATTGTTATTTGTTGAAAATAAGCTGGAGATTTTGAAATGGTTGGTCAAGAAGTGCAAGAAAAATTTGCAGCAATTACTTACGATTATAGAATTTGATGATAATTTGTTCGTCCTTTTATGCAAGATACAGAACAGCATTAGTTGCATAACAGAAATGAACCGGTCAACCTTTGAGCAAGAATTTGTTCCATTTTTCAGATTTCATGGCTTCAAGCTGGATTGTTTTATACACAGTAAATTCCCAGTTTGTTTTTTACGATCCCTGGAAAGATGGGGATTAATTTTCCAGTGGAGATGCAATTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTTACGAGTTTTTGTTGCAACAAAATCAACAATAGTTCAAAGATTCAAGTTAATTATTTTTTTTAGAATGC ] consensusID : consensus_14217#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [TTCCCATTANGATTTGGATTTAATGCATGATCGGTTCTTGGCCCAAGAGATTCCTTGTATATTCTGCCAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTAACTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCTAATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAAAAAAAAAAAAA] [+] EMBL AU085731 [TTCCCATTANGATTTGGATTTAATGCATGATCGGTTCTTGGCCCAAGAGATTCCTTGTATATTCTGCCAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTAACTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCTAATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14217#0 CTAGTGGGCTTTACACAGCCAAATAATTCAGATTACCGTAAAACCTCCGCCCCCAGCTAG 60 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 CGGGCTGGTGTTTCCTCCGCCGCCGCCGCCGCAAATGGAGGCCCTCCTCCGGTGGGCGGC 120 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 GGAGCTGGGCGTCTCCGACTCCCCGTCCGCGCCCTCCCCCTCCTCCTGCCTCGGCCGCTC 180 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 CGTCCTCATCGCCGACTTCCCCGACGCCGGCGGGAGGGGCTTGGCGGCGGCGCGGGACCT 240 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 CCGGCGCGGCGAGCTGGTGCTGCGGGCGCCGCGCGCCGCCCTGCTCACCAGCGGCCGCGT 300 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 CATGGACGATGACCCCAGGATCGCCTCCTCCGTCGCCAGCCACCTCCCCCGCCTCCCCTC 360 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 CGTCCAGACCCTGATCATATGTTTGTTGTCTGAAGTGGGAAAAGGGAAGAGTTCAAATTG 420 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 GTATCTATATTTGTCTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTT 480 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 TGAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGG 540 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 -------------TTTCAGGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGG 47 consensus_14217#0 AATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAA 600 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 AATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAA 107 consensus_14217#0 GCTTT-GATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTCAAGAACATTGCA 659 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 GCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTCAAGAACATTGCA 167 consensus_14217#0 TATAGCATGGGATGATGCTGGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATGCTGC 719 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 TATAGCATGGGATGATGCTGGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATACTGC 227 consensus_14217#0 TCCTAATGATGACAATTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGAC 779 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 TCCTAATGATGACAACTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGAC 287 consensus_14217#0 AAATAAGATGTTGGACCAGACAGATTTTGATTCATCTGAGAAGTTGACAGATGGGGGATA 839 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 AAATAGGATGTTGGACCAGACAGATTTTGATTCATCCGAGAAGTTGACAGATGGGGGATA 347 consensus_14217#0 TGAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGT 899 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 TGAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGT 407 consensus_14217#0 ------------------------------------------------------------ consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 TTCTTCTGATATTTGCCTAAAATATATGCCCTTTTTTGTCTATAGGATGCTCATGTTCTC 467 consensus_14217#0 ------------------------------------------------------------ consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 CCGTATCACATTATCTGCCTTCTTGTTGTTCTGTACTTTTGAATTAAACTTTGTCCTTTC 527 consensus_14217#0 --------ACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGT 951 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 GTACAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGT 587 consensus_14217#0 TTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAG-ATTTGGATTTA-T 1009 consensus_14217#2 ------------------------------------TTCCCATTANGATTTGGATTTAAT 24 consensus_14217#1 TTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAG-ATTTGGATTTA-T 645 * ****** *********** * consensus_14217#0 GCATGATCGGTTCTTGGCC-AAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCA 1068 consensus_14217#2 GCATGATCGGTTCTTGGCCCAAGAGATTCCTTGTATATTCTGCCAA-TGGACATCCCTCA 83 consensus_14217#1 GCATGATCGGTTCTTGGCC-AAGAGATTCCTTGTATATTTTGCCAAATGGACATCCCTCA 704 ******************* ******************* ****** ************* consensus_14217#0 TTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTA 1128 consensus_14217#2 TTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTA 143 consensus_14217#1 TTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTA 764 ************************************************************ consensus_14217#0 AGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAA 1188 consensus_14217#2 AGTCATCAGATCTACTCTGGATCATTGTTAACTGTTGAAAATGAGCTGGAGATTCTGAAA 203 consensus_14217#1 AGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTTTGAAA 824 ****************************** *********************** ***** consensus_14217#0 TGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGAT 1248 consensus_14217#2 TGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGAT 263 consensus_14217#1 TGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGAT 884 ************************************************************ consensus_14217#0 GATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATG 1308 consensus_14217#2 GATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATG 323 consensus_14217#1 GATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATG 944 ************************************************************ consensus_14217#0 AACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTG 1368 consensus_14217#2 AACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTG 383 consensus_14217#1 AACCGGTCAACCTTTGAGCAAGAATTTGCTCCATTTTTCAGATTTCATGGCTTCAAGCTG 1004 ********** ************************ ************************ consensus_14217#0 GATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGA 1428 consensus_14217#2 GATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGA 443 consensus_14217#1 GATTGTTTTATACACAGTAAACTCCCAGTTCGTTTTTTACGATCCCTGGAAAGATGGGGA 1064 ******* ************************* ** *********************** consensus_14217#0 TTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGT 1488 consensus_14217#2 TTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGT 503 consensus_14217#1 TTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGT 1124 ************************************************************ consensus_14217#0 AAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGC 1548 consensus_14217#2 AAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGC 563 consensus_14217#1 AAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGC 1184 ************************************************************ consensus_14217#0 TAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAA 1608 consensus_14217#2 TAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAA 623 consensus_14217#1 TAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAA 1244 ************************************************************ consensus_14217#0 GATTCAAGCTAATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAACAGC 1668 consensus_14217#2 GATTCAAGCTAATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAAAAAA 683 consensus_14217#1 GATC--ACCGGAGGAGG------------------------------------------- 1259 *** * * * * * consensus_14217#0 ATGTCAAATTGTCAACACTCGATAGCAGGGCGAGGTGCTTTCATAGTTCCATGCATCACA 1728 consensus_14217#2 AAAAAAA----------------------------------------------------- 690 consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 CTTTTTGGGGTTGCATAGTTTAAGCATAACAAGCGTTCTGTGGAATGCCTTCTGTGGAAT 1788 consensus_14217#2 ------------------------------------------------------------ consensus_14217#1 ------------------------------------------------------------ consensus_14217#0 GCCGCTGAGATACTGATAATTGATTA 1814 consensus_14217#2 -------------------------- consensus_14217#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||