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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2048 fasta sequence
[CCAAACGAAAAGCTTCAGCCCCCTTCTTTATAGCCTTTTGTTACAAGTATAAAAACAAGGGTGCAAACAGAAGTCAGTTTTGCCATTAATGTCTGATTTTGTATCTTTTGCTAGCAAGAGGGGATGTGCATAGTGTGAGGAGAGAGAGGTACAACAAGAAGAGAGAAATTAAGAGAGCAGTAGTAGAGGTGTGCTGCAGGAGGATGGTCAGGGCCTTCATAAGGGCTTCATGGGGGGCTCCAGAGAGGAAGATCGTCAGCACCACAATCACCTCCCTTCTGAGCTCCCCCTCGGCTTCCGGAGCTCCTCACCGACGACGATGATCGCCTCTTCCTCCATGAGCAAGGAATCGAGCAACTACGACATGGCCGATTTCGATCAAGCTTCGCTTTTTCTCTACCTAGACAGTCATGATCAACAATCCATCCAAGAACAACGACAAACTCTGAACATCTTCCCTTCCCAGCCGATGCATGTAGCCGACCCAGCTCATGAAGCAAAGAGTGCTGGGGTAGCCATGGCCATGCTTCCCAATGGCAACCAGCTGCAGGTTCTTGCTTCTCATCCCAGCAAGAAGCCTGATCAGCAAGGTGGTCAAAAGATTAATTCCAGTGTCCCTACTAATCCACCTGGCCCTAATCTTCCCTTGCCTAACTCTGCCAAGGATAACAAGAATAGTAGCCTCATTAAGAAGGAAGGAAGCAGCAGTGGGAAGGGTGCAACAACATCCAATGATCCAGAAAGAGAAGGAAGGAGGACACTAGACCCTAAGACACTGAGGAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTTAGGAAGAAGGCTTACATTCAGCAGTTGGAGTCAAGTAGGATTAGGCTAAGCCAGCTTGAACAACAAGTTCACGTGGCAAGAGTACAGGGTGCTATGCTGGGTGCTGGAGATCAGCACCAGGGCCTTCCTTCTGGCCCTTCAGCTGCATCGTTGTTTGACCTGGAGTATGGGAGATGGGTGGAGGAGCACAGCAAGCTGATATTCCAGCTGAGGGCAGCCCTGAACGAGCAGATGGCGG-ACAGCCAGCTGCAGGTGTTCGTCAACGGCGCGATGGCGCAGCACGACGAGCTGCTGAGCCTCAAGGGCGCCATTGCCAGGGCTGACATCTTCCATCTCCTCTGTGGCGTCTGGGCTACCCCCGCCGAACGCTGCTTCCTTTGGCTCGGTGGATTTAGACCCTCTGAGGCCATCAAGGTGATGCTTAAGCAGGTGGAGCCGTTGTCGGAGGGGCAGCTGATGAGCATCTACGAGCTCCAGCAAGCGGCGAAGGGGACGGAGGACGCCCTCAGCCACGCCATGGACGGCCTCCAGCAGTCGCTCTCCGACACCGTCGCCGCCCCTGACGTCGCCGCCGCCGGCGGCTTCATGGGGCACATGTCCCTCGCCATGAACAAGATCTCCGCTATGGAGGACATCGTCAGGCAGGCAGATGGCCTGAGGCAGCAGACCCTGCACAAGCTGCAGCATATGCTGACCATCCGGCAAGCCGCCCGGTGCTTCGTGGCAATCTCCGACTACTTCCACCGCCTACGCGCACTCAGCACACTATGGGTTGCGAGGCCAAGGCCGGAGGAGGGGCCGGCAATGTAGAATAAGTGTCTCAGAGAAGATCAGAACATCAACAACAATGCTTGCAAAATTTAACCTGGTTAAGAATTAGGTAGTTAGCTGCATGCAGTGAATTGAACTAGGGAGCACATTTGAAGAGAGGTGTATGTGAGAGTAATGCTCTCTCAGATGTGTAACTTGCAACTTTGTAAGGTGTATATAGCTTCTTAGGTGTTAGAGAAGAAAAGAAGTAGGGAATAGTGGAAACTTAATTTGAACTTTCTTTTGTTTCTTTTTATCCCTGACTTTTTCTACTTCTTTGCCAGCTATATGTAAGTTCACCTGGAACTACATCATTGATTTGGATAGTGTTTCTAATACTTGCTGGTAACAAAATCATGAGATAAATGCTCTAAGGGGAAAAAAAAACTTCCAGAGTCTCATATCCCCTCTGAAA]
[+] EMBL AK106988 [CCAAACGAAAAGCTTCAGCCCCCTTCTTTATAGCCTTTTGTTACAAGTATAAAAACAAGGGTGCAAACAGAAGTCAGTTTTGCCATTAATGTCTGATTTTGTATCTTTTGCTAGCAAGAGGGGATGTGCATAGTGTGAGGAGAGAGAGGTACAACAAGAAGAGAGAAATTAAGAGAGCAGTAGTAGAGGTGTGCTGCAGGAGGATGGTCAGGGCCTTCATAAGGGCTTCATGGGGGGCTCCAGAGAGGAAGATCGTCAGCACCACAATCACCTCCCTTCTGAGCTCCCCCTCGGCTTCCGGAGCTCCTCACCGACGACGATGATCGCCTCTTCCTCCATGAGCAAGGAATCGAGCAACTACGACATGGCCGATTTCGATCAAGCTTCGCTTTTTCTCTACCTAGACAGTCATGATCAACAATCCATCCAAGAACAACGACAAACTCTGAACATCTTCCCTTCCCAGCCGATGCATGTAGCCGACCCAGCTCATGAAGCAAAGAGTGCTGGGGTAGCCATGGCCATGCTTCCCAATGGCAACCAGCTGCAGGTTCTTGCTTCTCATCCCAGCAAGAAGCCTGATCAGCAAGGTGGTCAAAAGATTAATTCCAGTGTCCCTACTAATCCACCTGGCCCTAATCTTCCCTTGCCTAACTCTGCCAAGGATAACAAGAATAGTAGCCTCATTAAGAAGGAAGGAAGCAGCAGTGGGAAGGGTGCAACAACATCCAATGATCCAGAAAGAGAAGGAAGGAGGACACTAGACCCTAAGACACTGAGGAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTTAGGAAGAAGGCTTACATTCAGCAGTTGGAGTCAAGTAGGATTAGGCTAAGCCAGCTTGAACAACAAGTTCACGTGGCAAGAGTACAGGGTGCTATGCTGGGTGCTGGAGATCAGCACCAGGGCCTTCCTTCTGGCCCTTCAGCTGCATCGTTGTTTGACCTGGAGTATGGGAGATGGGTGGAGGAGCACAGCAAGCTGATATTCCAGCTGAGGGCAGCCCTGAACGAGCAGATGGCGG ACAGCCAGCTGCAGGTGTTCGTCAACGGCGCGATGGCGCAGCACGACGAGCTGCTGAGCCTCAAGGGCGCCATTGCCAGGGCTGACATCTTCCATCTCCTCTGTGGCGTCTGGGCTACCCCCGCCGAACGCTGCTTCCTTTGGCTCGGTGGATTTAGACCCTCTGAGGCCATCAAGGTGATGCTTAAGCAGGTGGAGCCGTTGTCGGAGGGGCAGCTGATGAGCATCTACGAGCTCCAGCAAGCGGCGAAGGGGACGGAGGACGCCCTCAGCCACGCCATGGACGGCCTCCAGCAGTCGCTCTCCGACACCGTCGCCGCCCCTGACGTCGCCGCCGCCGGCGGCTTCATGGGGCACATGTCCCTCGCCATGAACAAGATCTCCGCTATGGAGGACATCGTCAGGCAGGCAGATGGCCTGAGGCAGCAGACCCTGCACAAGCTGCAGCATATGCTGACCATCCGGCAAGCCGCCCGGTGCTTCGTGGCAATCTCCGACTACTTCCACCGCCTACGCGCACTCAGCACACTATGGGTTGCGAGGCCAAGGCCGGAGGAGGGGCCGGCAATGTAGAATAAGTGTCTCAGAGAAGATCAGAACATCAACAACAATGCTTGCAAAATTTAACCTGGTTAAGAATTAGGTAGTTAGCTGCATGCAGTGAATTGAACTAGGGAGCACATTTGAAGAGAGGTGTATGTGAGAGTAATGCTCTCTCAGATGTGTAACTTGCAACTTTGTAAGGTGTATATAGCTTCTTAGGTGTTAGAGAAGAAAAGAAGTAGGGAATAGTGGAAACTTAATTTGAACTTTCTTTTGTTTCTTTTTATCCCTGACTTTTTCTACTTCTTTGCCAGCTATATGTAAGTTCACCTGGAACTACATCATTGATTTGGATAGTGTTTCTAATACTTGCTGGTAACAAAATCATGAGATAAATGCTCTAAGGGGAAAAAAAAACTTCCAGAGTCTCATATCCCCTCTGAAA]
[+] EMBL CA759329 [ GAGAGAGGTACAACAAGAAGAGAGAAATTAAGAGAGCAGTAGTAGAGGTGTGCTGCAGGAGGATGGTCAGGGCCTTCATAAGGGCTTCATGGGGGGCTCCAGAGAGGAAGATCGTCAGCACCACAATCACCTCCCTTCTGAGCTCCCCCTCGGCTTCCGGAGCTCCTCACCGACGACGATGATCGCCTCTTCCTCCATGAGCAAGGAATCGAGCAACTACGACATGGCCGATTTCG ]
[+] EMBL CA753259 [ GCAAAGAGTGCTGGGGTAGCCATGGCCATGCTTCCCAATGGCAACCAGCTGCAGGTTCTTCCTTCTCATCCCAGCAAGAAGCCTGATCAGCAAGGTGCTCAAAAGATTAATTCCAGTGTCCCTACTAATCCACCTGGCCCTAATCTTCCCTTGCCTAACTCTGCCAAGGATAACAAGAATAGTAGCCTCATTAAGAAGGAAGGAAGCAGCAGTGGGAAGGGTGCAACAACATCCAATGATCCAGAAAGAGAAGGAAGGAGGACACTAGACCCTAAGACACTGAGGAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTTAGGAAGAAGGCTTACATTCAGCAGTTGGAGTCAAGTAGGATTAGGCTAAGCCAGCTTGAACAACAAGTTCACGTGGCAAGAGTACAGGGTGCTATGCTGGGTGCTGGAGATCAGCACCAGGGCCTTCCTTCTGGCCCTTCAGCCGCATCGTTGTTTGACCTGGAGTATGGGAGATGGGTGGAGGAGCACAGCAAGCTGATATTCCAGCTGAGGGCCACCCTGAACGAGCAGATGGCGGAACACCCACCTGCA GTGTCCGT AACGGCCCAATGGCGCACAACAAAAACCTGCT AGCCTCAA GGCG CAATGCCA TGCCGACAT TTTCAT TCCNCCGTTGCGT GGGGCTCCCCCCt ]
consensusID : consensus_14223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 675 fasta sequence
[GGCAGTGCAGCTAAATTACCTCACT-AAGGGA-ATAGCTTGGGCCG-GT-TGGCCTCCGCCCCGGCGG-CCCGTCCA-GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA-GGCCGTTCGA-GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA-GGGACTCCGCCGCCGCCGCCA-ACCCCGCCTCCG-ATCCCAGCCTCTTCG-A-A-TCCGTG-ACCGC-GGTGTGCGAGA-TGTGGA-GGTCAA-GGG-AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG-ATGAGCAGC-A-GGATGG-TA-AATGCA-AG-AAGCCAAAGGG-AAGTAT-A-AGGTTGT-ACT-ATTGGGCTTTTCATGCATCAAG-AGGTTGT-ATGGAGG-ATCCTATTTGATCG-ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGGAAGGGTGCAGCAACATCAGAATGGC]
[+] EMBL BU672958 [GGCAGTGCAGCTAAATTACCTCACTAAAGGGA ATAGCTT GGCGC GT TGGCCTCCGCCCCGGCGG CCCGTCCA GCTCCGCCGGCGCCGGGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCGGGTTCGCCGCCCTAAGTTCGGA GGCCGTTCGA GGTAGGTCTCCGTCCGAGTTCTACCTCAGCGCCCTCTCCGGCGCATGCA GGGACTCCGTCGCCGTCGACACACCCCGCCTCCGCATCCCAGGCTCTTCG ACA TCCGTGTAGCGT GGTGTGCGAGA TGTGGA GGTCAA GGGCAGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTGCATGAGCAGCAA GCATGG TA AATGGC CG AAGCCAACGGG AAGTAT C AGGTTGT ACT AATGGGCTATTCATGCATCAAG AGGTAGT ATG ]
[+] EMBL CB967071 [ TCACT AAGGGA ATAGCTTGGGCGC GT TGG CTCCG CCCGGCGG CCCGT CA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ]
[+] EMBL BU672990 [ TCACT AAGGGACATAGCTTGGGCCGTGT TGGCCTCCGCCCCGGCGGCCCCGTCCA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGTACTCCGCCGCGGCCGCCA ACCCCGACTCCG ATCCGAGCCTCTTCG A ACTCCGTG ACCGCAGGTGGGCGAGACTGTGGACGGTCAACGGG A ]
[+] EMBL CB964695 [ AGGGA ATAGC GGGCCG GT TGGCCTCCG CCCGGCGG CCCGTCCA GCTCCG CG CGCCGCGT CACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ]
[+] EMBL CB967106 [ CTTGGGCGC GT TGGCCTCCG CCCGGCGG CCCGT CA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCGAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCGGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATCAAGAAGGAAGGAAGCAACCGTGGGAAGGGTGCAGCAACATCAGAATGGC]
[+] EMBL CB967286 [ TTGGG CG GT TGGCCTCCGCCCCGGCGGCCCCGTCCA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ]
[+] EMBL CB964770 [ gcGGGCCG GT TGG CT CGCCCCGGCGG CCCGT CA GCT CGCCGCCGCCGCGT CACCTTCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA CGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC ACGGCTGG TACACTGC AG AAGCCAAAGGG AAGTAT A CGGTTGT ACT ]
[+] EMBL BU673692 [ GGCCT GTGTGG CTCCGCCCCGGCGG CCCGTCCA GCTCCGCCG CGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ]
[+] EMBL BU673486 [ GGCCTCCGCCCCGGCGGCCCCGTCC GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTCAGAAGGAAGGAAGCAACAGTGGG ]
[-] EMBL BU672821 [ GCCCCGTCGGCCCCGTCCA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ]
[+] EMBL BU673445 [ CCCGGCGG CCCGTCCACGCTCCGCCGCCGCCGCGT CACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGCGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGCGGGCGCGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGACGGCCGTTCGACGGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCACGGGACTCCGCCGCCGCCGACA CCCCCGCCTCCG CTCCCCGCCTCTTCGCA C TCCGTG ACCGC GGTGTGCGACA TGTGGA GGTCAC GGG AGGCAGGGACGAGATGGTGGCACGGACATACCCGGTG ATGAGCAGC A GGATGGATA AAAGCACAGCAAGCCAAAGGGCAAGTATCACAGGTTGTCACTCATTGGGCTTTTCATGCATCCAGCAGGTTGTCATGGCGGCATCCTATAGCATCGCATT ]
consensusID : consensus_14223#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence
[GGAATACTGGGCCTGGTTGGCTCCGCCCGGCGGCCCGTCACTCCGCTGCGCGCGTCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTATGCTTGCTGCTGGAGCTCGAGTGGGAACCCTATCCCTTAGCCTAGCAGTGCTGTGCGTGCGCAGCGAGCGCCGCG]
[+] EMBL CB964534 [GGAATACTGGGCCTGGTTGGCTCCGCCCGGCGGCCCGTCACTCCGCTGCGCGCGTCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTATGCTTGCTGCTGGAGCTCGAGTGGGAACCCTATCCCTTAGCCTAGCAGTGCTGTGCGTGCGCAGCGAGCGCCGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CCAAACGAAAAGCTTCAGCCCCCTTCTTTATAGCCTTTTGTTACAAGTATAAAAACAAGG 60
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GTGCAAACAGAAGTCAGTTTTGCCATTAATGTCTGATTTTGTATCTTTTGCTAGCAAGAG 120
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GGGATGTGCATAGTGTGAGGAGAGAGAGGTACAACAAGAAGAGAGAAATTAAGAGAGCAG 180
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 TAGTAGAGGTGTGCTGCAGGAGGATGGTCAGGGCCTTCATAAGGGCTTCATGGGGGGCTC 240
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CAGAGAGGAAGATCGTCAGCACCACAATCACCTCCCTTCTGAGCTCCCCCTCGGCTTCCG 300
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GAGCTCCTCACCGACGACGATGATCGCCTCTTCCTCCATGAGCAAGGAATCGAGCAACTA 360
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CGACATGGCCGATTTCGATCAAGCTTCGCTTTTTCTCTACCTAGACAGTCATGATCAACA 420
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 ATCCATCCAAGAACAACGACAAACTCTGAACATCTTCCCTTCCCAGCCGATGCATGTAGC 480
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CGACCCAGCTCATGAAGCAAAGAGTGCTGGGGTAGCCATGGCCATGCTTCCCAATGGCAA 540
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CCAGCTGCAGGTTCTTGCTTCTCATCCCAGCAAGAAGCCTGATCAGCAAGGTGGTCAAAA 600
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GATTAATTCCAGTGTCCCTACTAATCCACCTGGCCCTAATCTTCCCTTGCCTAACTCTGC 660
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CAAGGATAACAAGAATAGTAGCCTCATTAAGAAGGAAGGAAGCAGCAGTGGGAAGGGTGC 720
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 AACAACATCCAATGATCCAGAAAGAGAAGGAAGGAGGACACTAGACCCTAAGACACTGAG 780
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTTAGGAAGAAGGCTTACAT 840
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 TCAGCAGTTGGAGTCAAGTAGGATTAGGCTAAGCCAGCTTGAACAACAAGTTCACGTGGC 900
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 AAGAGTACAGGGTGCTATGCTGGGTGCTGGAGATCAGCACCAGGGCCTTCCTTCTGGCCC 960
consensus_14223#1 -----------------------------------------------GGCAGTGCAGCTA 13
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 TTCAGCTGCATCGTTGTTTGACCTGGAGTATGGGAGATGGGTGGAGGAGCACAGCAAGCT 1020
consensus_14223#1 AATTACCTCACTAAGGGAATAGCTTG--GGCCGGTTGGCCTCCGCCCCGGCG-GCCCGTC 70
consensus_14223#2 ---------------GGAATA-CTGG--GCCTGGTTGGC-TCCGCCC-GGCG-GCCCGTC 39
consensus_14223#0 GATATTCCAGCTGAGGGCAGCCCTGAACGAGCAGATGGCGGACAGCCAGCTGCAGGTGTT 1080
** * ** * * **** * ** * * **
consensus_14223#1 CAGCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCT---CCTCGCTTGCGC--TTGCTGC 125
consensus_14223#2 --ACTCCGCTGCG--CGCGTC-ACCTCCTTCTCTCT---CCTCGCTTGCGC--TTGCTGC 89
consensus_14223#0 CGTCAACGGCGCGATGGCGCAGCACGACGAGCTGCTGAGCCTCAAGGGCGCCATTGCCAG 1140
* ** ** *** * * ** **** **** ****
consensus_14223#1 TCTCTCTCCCTCCCATCTCGCCCT-TGCTTGCTGCTGGAGCTCGAG-GGGAACCCTATCC 183
consensus_14223#2 TCTCTCTCCCTCCCATCTCGCCCTATGCTTGCTGCTGGAGCTCGAGTGGGAACCCTATCC 149
consensus_14223#0 GGCTGACATCTTCCATCTC-CTCTGTGGCGTCTGGGCTACCCCCGCCGAACGCTGCTTCC 1199
** ******* * ** ** *** * * * * * ***
consensus_14223#1 CT-AGCCTAGCAGTGC-GTGCGTGCG-AGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGC 240
consensus_14223#2 CTTAGCCTAGCAGTGCTGTGCGTGCGCAGCGAGCGCCGCG-------------------- 189
consensus_14223#0 TTTGGCTCGGTGGATT--TAGACCCTCTGAGGCCATCAAGGTGATGCTTAAGCAGGTGGA 1257
* ** * * * * * * * * *
consensus_14223#1 GAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGAGGCCGTTCGAGG 300
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GCCGTTGTCGGAGGGGCAGCTGATGAGCATCTACGAGCTCCAGCAAGCGGCGAAGGGGAC 1317
consensus_14223#1 TAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCAGGGACTCCGCCGC 360
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GGAGGACGCCCTCAGCCACGCCATGGACGGCCTCCAGCAGTCGCTCTCCGACACCGTCGC 1377
consensus_14223#1 CGCCGCCAACCCCGCCTCCGATCCCAGCCTCTTCGAATCCGTGACCG-CGGTGTGCGAGA 419
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CGCCCCTGACGTCGCCGCCGCCGGCGGCTTCATGGGGCACATGTCCCTCGCCATGAACAA 1437
consensus_14223#1 TGTGGAGGTCAAGGGAGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTGATGAGCAG 479
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GATCTCCGCTATGGAGGACATCGTCAGGCAGGCAGATGGCCTGAGGCAGCAGACCCTGCA 1497
consensus_14223#1 CAGGATGGTAAATGCAAGAAGCCAAAGGGAAGTATAAGGTTGTACTATTGGGCTTTTCAT 539
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CAAGCTGCAGCATATGCTGACCATCCGGCAAGCCGCCCGGTGCTTCGTGGCAATCTCCGA 1557
consensus_14223#1 GCATCAAGAGGTTGTATGGAGGATCC-TATTTGATCGATTGTT---CCCTTGCCTAACTC 595
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CTACTTCCACCGCCTACGCGCACTCAGCACACTATGGGTTGCGAGGCCAAGGCCGGAGGA 1617
consensus_14223#1 TGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGGAAGGG 655
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GGGGCCGGCAATGTAGAATAAGTGTCTCAGAGAAGATCAGAACATCAACAACAATGCTTG 1677
consensus_14223#1 TGCAGCAACATCAGAATGGC---------------------------------------- 675
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CAAAATTTAACCTGGTTAAGAATTAGGTAGTTAGCTGCATGCAGTGAATTGAACTAGGGA 1737
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GCACATTTGAAGAGAGGTGTATGTGAGAGTAATGCTCTCTCAGATGTGTAACTTGCAACT 1797
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 TTGTAAGGTGTATATAGCTTCTTAGGTGTTAGAGAAGAAAAGAAGTAGGGAATAGTGGAA 1857
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 ACTTAATTTGAACTTTCTTTTGTTTCTTTTTATCCCTGACTTTTTCTACTTCTTTGCCAG 1917
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 CTATATGTAAGTTCACCTGGAACTACATCATTGATTTGGATAGTGTTTCTAATACTTGCT 1977
consensus_14223#1 ------------------------------------------------------------
consensus_14223#2 ------------------------------------------------------------
consensus_14223#0 GGTAACAAAATCATGAGATAAATGCTCTAAGGGGAAAAAAAAACTTCCAGAGTCTCATAT 2037
consensus_14223#1 -----------
consensus_14223#2 -----------
consensus_14223#0 CCCCTCTGAAA 2048
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||