These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 850 fasta sequence [TTTTTTTTTTTTTTCTCCTAGTCACCTATAGAGAACGGCCCATAGGTGATAACTCATTTAAAACCGACACCTATTAATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAGGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAAATCCGAGTTTTTCGAGACAAAGGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATACCTCAAGGGGTTACCACATGGGCAC-AAAAACCTAGCTCCGGTGG-AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTGAAGCAGAGGTGGAC] [+] EMBL CF320150 [TTTTTTTTTTTTTTCTCCTAGTCACCTATAGAGAACGGCCCATAGGTGATAACTCATTTAAAACCGACACCTATTAATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAGGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAAATCCGAGTTTTTCGAGACAAAGGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATACCTCAAGGGGTTACCACATGGGCAC AAAAACCTAGCTCCGGTGGAAGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCT ] [-] EMBL AK063632 [ GGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAGATCCGAGTTTTTCGAGACAAAAGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATACCTCAAGGGGTTACCACATGGGCAC AAAAACCTAGCTCCGGTGG AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG ] [+] EMBL CF326662 [ TTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATTCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATACCTCAAGGGGTTACCACATGGGCAC AAAAACCTAGCTCCGGTGG AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTGAAGCAGAGGTGGAC] [-] EMBL CF309493 [ CCACATGGGCAC AAAAACCTAGCTCCGGTGG AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG ] [-] EMBL CF320149 [ GGGCACAAAAAACCTAGCTCCGGTGG AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG ] consensusID : consensus_14228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 826 fasta sequence [TTTTTTTTTTTTTTTTATCACAGTTAATTACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCCTTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCGGT-AAAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGTAGCGAGCACGAGGTCAAGCTCGAGGCGGCGAAGGTGGTCTGAATCTGATGCACTGCGCACTCCAACTCGTCAAGGG] [+] EMBL CB644483 [TTTTTTTTTTTTTTTTATCACAGTTAAATACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCCTTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCGGT AAAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGTAGCGAGCACGAGGTCAAGCTCGAGGCGGCGAAGGTGGTCTGAATC ] [-] EMBL AU166739 [ tttTTACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAAT ] [+] EMBL CF336515 [ ttttTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCCTTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCGGT AAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAAT ] [+] EMBL CB663353 [ CTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCCTTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCGGTAAAAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGTAGCGAGCACGAGGTCAAGCTCGAGGCGGCGAAGGTGGTCTGAATCTGATGCACTGCGCACTCCAACTCGTCAAGGG] consensusID : consensus_14228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence [TTTTTTTTTGGGGTTAGGGGAGTTATTGATTGATGATGTGTACAGTAGGATCTCTCCTAGTCACCTATAGAGAACGGCCCATAGGTGATAACTCATTTAAAACCGACACCTATTAATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAGGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAGATCCGAGTTTTTCGAGACAAAAGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATAACTCAAGGGGTTACCACATGGGCACAAAAACCTAGCTCCGGTGGAGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG] [+] EMBL CF308376 [TTTTTTTTTGGGGTTAGGGGAGTTATTGATTGATGATGTGTACAGTAGGATCTCTCCTAGTCACCTATAGAGAACGGCCCATAGGTGATAACTCATTTAAAACCGACACCTATTAATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAGGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAGATCCGAGTTTTTCGAGACAAAAGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATAACTCAAGGGGTTACCACATGGGC ] [-] EMBL CF308377 [ GTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATAACTCAAGGGGTTACCACATGGGCACAAAAACCTAGCTCCGGTGGAGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG] consensusID : consensus_14228#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence [ATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG] [-] EMBL AK061278 [ATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG] consensusID : consensus_14228#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TTTTTTACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGAGAGGTGGCAAAACGGCGATGTTCGATGC] [+] EMBL CF326220 [TTTTTTACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGAGAGGTGGCAAAACGGCGATGTTCGATGC] consensusID : consensus_14228#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [ACTCCCATTTTGCCTTCTGATATGATCAGTAACCTATATGATGAAACATGGGTTATGAGGTTATCTAGCTTGTTCAGAATGAATCAAATAACTTCTGTGATTTTTTTCAATATAGGATCTTCACGAAGAAATTGCTTTTGTATCTTGCTCTTCATGAATGAATTACTTTTATGACTTGTTCTTCATGAATGAATCTTGACAATGAAAAAATATTTGATTCTGCAGATGCACGCCTCTTTCTGGGATCTATAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCGGGATTTCTGGTGGGCATCAAGCAATTTTTTACGTGATCAAGAGATTACTCTTTTCCTGCTGAATATTAAAGCAAAGGGTTTGTTCACATCTTTTTTTTTTTACCGAAGTTTTTCAGATCCATTATTTGATTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGATGACT] [+] EMBL CF308444 [ACTCCCATTTTGCCTTCTGATATGATCAGTAACCTATATGATGAAACATGGGTTATGAGGTTATCTAGCTTGTTCAGAATGAATCAAATAACTTCTGTGATTTTTTTCAATATAGGATCTTCACGAAGAAATTGCTTTTGTATCTTGCTCTTCATGAATGAATTACTTTTATGACTTGTTCTTCATGAATGAATCTTGACAATGAAAAAATATTTGATTCTGCAGATGCACGCCTCTTTCTGGGATCTATAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCGGGATTTCTGGTGGGCATCAAGCAATTTTTTACGTGATCAAGAGATTACTCTTTTCCTGCTGAATATTAAAGCAAAGGGTTTGTTCACATCTTTTTTTTTTTACCGAAGTTTTTCAGATCCATTATTTGATTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGATGACT] consensusID : consensus_14228#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [CACTACCGTCTCCCCACCACGGCATCGAACATCGCCGTTTTGCCACCTCTCGATGCACGCCTCTTTCTGGGATCTATAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCGGGATTTCTGGTGGGCATCAAGCAATTTTTTACGTGATCAAGAGATTACTCTTTTCCTGCTGAATATTAAAGCAAAGGGTTTGTTCACATCTTTTTTTTTACCCGAAGTTTTTCAGATCCATTATTTGATTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGAT] [+] EMBL CF336514 [CACTACCGTCTCCCCACCACGGCATCGAACATCGCCGTTTTGCCACCTCTCGATGCACGCCTCTTTCTGGGATCTATAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCGGGATTTCTGGTGGGCATCAAGCAATTTTTTACGTGATCAAGAGATTACTCTTTTCCTGCTGAATATTAAAGCAAAGGGTTTGTTCACATCTTTTTTTTTACCCGAAGTTTTTCAGATCCATTATTTGATTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14228#1 TTTTTTTTTTTTTTTTATCACAGTTAATTACTAACTCAAATTTTATCGATTTCCTTTCGG 60 consensus_14228#4 -----------------------TTTTTTACTAACTCAAATTTTATCGATTTCCTTTCGG 37 consensus_14228#3 ---------------------------------------ATTTTATCGATTTCCTTTCGG 21 consensus_14228#5 ----------------------------------------ACTCCCATTTTGCCTTCTGA 20 consensus_14228#6 ------------------------------------------------------------ consensus_14228#0 -----------------------------------------TTTTTTTTTTTTTTCTCCT 19 consensus_14228#2 --TTTTTTTTTGGGGTTAGGGGAGTTATTGATTGATGATGTGTACAGTAGGATCTCTCCT 58 consensus_14228#1 AATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCC 120 consensus_14228#4 AATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCC 97 consensus_14228#3 AATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCC 81 consensus_14228#5 TATGATCAGTAACCTATATGATGAAACATGGGTTATGAGGTTATCTAGCTTGTTCAGAAT 80 consensus_14228#6 ------------------------------------------------------------ consensus_14228#0 AGTCACCTATAGAGAACGG---CCCATAGGTGATAACTCATTTAAAACCGACACCTATTA 76 consensus_14228#2 AGTCACCTATAGAGAACGG---CCCATAGGTGATAACTCATTTAAAACCGACACCTATTA 115 consensus_14228#1 TACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATG 180 consensus_14228#4 TACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCT------------------ 139 consensus_14228#3 TACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATG 141 consensus_14228#5 GAATCAAATAACTTCTGTGATTTTTTTCAATATAGGATCTTCACGAAGAAATTGCTTTTG 140 consensus_14228#6 ------------------------------------------------------------ consensus_14228#0 ATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAG 136 consensus_14228#2 ATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAG 175 consensus_14228#1 TAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGC 240 consensus_14228#4 ------------------------------------------------------------ consensus_14228#3 TAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGC 201 consensus_14228#5 TATC-----TTGCTCTTCATGAATGAATTACTTTTATGACTTGTTCTTCA------TGAA 189 consensus_14228#6 ----------------------------------CACTACCGTCTCCCCA------CCAC 20 consensus_14228#0 GAGTGATCCTCTCTAGCGGGAGATTGT-----GAGATCCCCCTTTGTGAGTTCGGCCGGG 191 consensus_14228#2 GAGTGATCCTCTCTAGCGGGAGATTGT-----GAGATCCCCCTTTGTGAGTTCGGCCGGG 230 consensus_14228#1 AGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCA 300 consensus_14228#4 --------------------------------------------------CAAAAATTCA 149 consensus_14228#3 AGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCA 261 consensus_14228#5 TGAATCTTGACAATGAAAAAATATTTGATTCTGCAGATGCACGCCTCTTTCTGGGATCTA 249 consensus_14228#6 GGCATC----GAACATCGCCGTTTTGCCACCTCTCGATGCACGCCTCTTTCTGGGATCTA 76 consensus_14228#0 GGCAGCGGATGAAATCCGAGTTTTTCGAGACAAAGGAGACACAAGGGATTTATACAAATT 251 consensus_14228#2 GGCAGCGGATGAGATCCGAGTTTTTCGAGACAAAAGAGACACAAGGGATTTATACAAATT 290 * consensus_14228#1 GAGAAGAAGCAAGAGAATAAGACTTCATCACTTGG--GTAGCCTTTAAAAGACTGCTTCC 358 consensus_14228#4 GAGAAGAAGCAAGAGAATAAGACTTCATCACTTGG--GTAGCCTTTAAAAGACTGCTTCC 207 consensus_14228#3 GAGAAGAAGCAAGAGAATAAGACTTCATCACTTGG--GTAGCCTTTAAAAGACTGCTTCC 319 consensus_14228#5 TAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCG--G-GATTTCTGGTGGGCATCAAGC 306 consensus_14228#6 TAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCG--G-GATTTCTGGTGGGCATCAAGC 133 consensus_14228#0 CGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTAC 311 consensus_14228#2 CGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTAC 350 * * * * * * * * * consensus_14228#1 AG---CCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATG 415 consensus_14228#4 AG---CCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATG 264 consensus_14228#3 AG---CCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATG 376 consensus_14228#5 AA---TTTTTTACGTGATCAAG------AGATTACTCTTTTCCTGCTGAATATTAAAGCA 357 consensus_14228#6 AA---TTTTTTACGTGATCAAG------AGATTACTCTTTTCCTGCTGAATATTAAAGCA 184 consensus_14228#0 AAGATCTCCTTGTTGGAGTAAAATGTG-GTGTTGATCATCCGGGGCTAGAGACTGCTCTA 370 consensus_14228#2 AAGATCTCCTTGTTGGAGTAAAATGTG-GTGTTGATCATCCGGGGCTAGAGACTGCTCTA 409 * ** * ** ** * * * * * * consensus_14228#1 ATTGGG---ATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGA-----AA 467 consensus_14228#4 ATTGGG---ATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGA-----AA 316 consensus_14228#3 ATTGGG---ATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGA-----AA 428 consensus_14228#5 AAGGGT---TTGT-TCACATCTTTTTTTTTTTACCGAAGTTTTTCAGATCCATTATTTGA 413 consensus_14228#6 AAGGGT---TTGT-TCACATCTTTTTTTTTAC-CCGAAGTTTTTCAGATCCATTATTTGA 239 consensus_14228#0 GAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCT---TTTACTAGGTCTGG-----AC 422 consensus_14228#2 GAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCT---TTTACTAGGTCTGG-----AC 461 * ** * * * ** * consensus_14228#1 TAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCC 527 consensus_14228#4 TAAATGCAACAACAGATGGAATCAACT--------------------------------- 343 consensus_14228#3 TAAATGCAACAACAGATGGAATCAACT--------------------------------- 455 consensus_14228#5 TTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGATGACT----------------- 456 consensus_14228#6 TTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGAT--------------------- 278 consensus_14228#0 CTCCTTTTATACCTCAAGGGGTTACCACATGGGCACAAAAACCTAGCTCCGGTGGAGAAG 482 consensus_14228#2 CTCCTTTTATAACTCAAGGGGTTACCACATGGGCACAAAAACCTAGCTCCGGTGGAGAAG 521 * * * * consensus_14228#1 TTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCG 587 consensus_14228#4 ------------------------------------------------------------ consensus_14228#3 ------------------------------------------------------------ consensus_14228#5 ------------------------------------------------------------ consensus_14228#6 ------------------------------------------------------------ consensus_14228#0 TGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTG 542 consensus_14228#2 TGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTG 581 consensus_14228#1 GTAAAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATC 647 consensus_14228#4 ----------------------------TTGCTTTAATATTCAGCAGGAAAAGAGTAATC 375 consensus_14228#3 ----------------------------TTGCTTTAATATTCAGCAGGAAAAGAGTAATC 487 consensus_14228#5 ------------------------------------------------------------ consensus_14228#6 ------------------------------------------------------------ consensus_14228#0 ATGATGG------GGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCT 596 consensus_14228#2 ATGATGG------GGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCT 635 consensus_14228#1 TCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAA 707 consensus_14228#4 TCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAA 435 consensus_14228#3 TCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAA 547 consensus_14228#5 ------------------------------------------------------------ consensus_14228#6 ------------------------------------------------------------ consensus_14228#0 GCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGA------TTTTGGA 650 consensus_14228#2 GCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGA------TTTTGGA 689 consensus_14228#1 CCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGTAGCG-AGCAC--GA-GG 763 consensus_14228#4 CCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGAGAGGTGGCAA--AACGG 493 consensus_14228#3 CCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCACAAGCAGTCGACTAGGGA 607 consensus_14228#5 ------------------------------------------------------------ consensus_14228#6 ------------------------------------------------------------ consensus_14228#0 AATCGGAAATCTTCTGTGTTTATGAGTACCAATC-----CCACAAGCAGTCGACTAGGGA 705 consensus_14228#2 AATCGGAAATCTTCTGTGTTTATGAGTACCAATC-----CCGAGAGGTGGCAAAACGGCG 744 consensus_14228#1 TCAAGCTCGAGGCGGCGAAGGTGGTCTGA--ATCTGATGCACTGCGCACTCCAACTCGTC 821 consensus_14228#4 CGATGTTCGATGC----------------------------------------------- 506 consensus_14228#3 ACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACA 667 consensus_14228#5 ------------------------------------------------------------ consensus_14228#6 ------------------------------------------------------------ consensus_14228#0 ACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACA 765 consensus_14228#2 ATGT--TCGATGCCGTGGTGGGGAGACGGTAGTG-------------------------- 776 consensus_14228#1 AAGGG------------------------------------------------------- 826 consensus_14228#4 ------------------------------------------------------------ consensus_14228#3 AGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGG 727 consensus_14228#5 ------------------------------------------------------------ consensus_14228#6 ------------------------------------------------------------ consensus_14228#0 AGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGG 825 consensus_14228#2 ------------------------------------------------------------ consensus_14228#1 ------------------------- consensus_14228#4 ------------------------- consensus_14228#3 AGACGGTAGTG-------------- 738 consensus_14228#5 ------------------------- consensus_14228#6 ------------------------- consensus_14228#0 AGACGGTAGTGAAGCAGAGGTGGAC 850 consensus_14228#2 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||