These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1350 fasta sequence [TACTCCAAGTTGATGGCACCAAACATTGAAAATTCACTGTCATGGCAGATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGC-TTTTCTCATTGAATAATAAAAGAGTATAT-GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTGCTGCAAAAAAAAAAA] [+] EMBL AK100820 [TACTCCAAGTTGATGGCACCAAACATTGAAAATTCACTGTCATGGCAGATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCT ] [+] EMBL CA763998 [ TCCAACAATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGTTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGNCCATTGGTTCAAGAAGNTCCTCCTGNAATGAT AAAAAGCACCATTGCACTCATTGCTTTTTCTCATTGAATAATAAAAGAGTATATGGTTTTGCGNGAATTTG ] [+] EMBL AK062776 [ AAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT ] [-] EMBL CA759481 [ GTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGTTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATATAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTGCTGCAAAAAAAAAAA] [-] EMBL CA759482 [ GTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGTTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATATAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTGCTGCAAAAAAAAAAA] [-] EMBL CF318496 [ AAATGGCATCCCCATAGGACCGCAGGTGGCTTCACCTTGGCTTTACGTCTACCCTCAAGGGTTCCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTATACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGTTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGACAAAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTACTGCAAAAAAAAA ] consensusID : consensus_14296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1020 fasta sequence [CCGAATCGGCACGAGGCTGGCCTGTTTGCACCACCCCGATGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTG-ACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAAATTACAATGACGGAAGGAAAAAATACCCCAAGAACTTTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAATTTGGTAAAAGAAAAAAAAAAAAAAAAAAGCTCGTCCTCGGCCG] [+] EMBL CB000178 [CCGAATCGGCACGAGGCTGGCCTGTTTGCACCACCCCGATGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACTCTCAAGGCTTCCGTGCACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGACTACATCACTGAAAATGGCGTTGATGAATT ] [+] EMBL CA998998 [ GAATCGGCACGAGGCTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTG ACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTC ] [+] EMBL BG101702 [ TTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTG ACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCC ] [-] EMBL CF276515 [ TCCGTG ACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTTTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAAATTACAATGACGGAAGGAAAAAATACCCCAAGAACTTTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAATTTGGTAAAAGAAAAAAAAAAAAAA ] [+] EMBL BU572330 [ GCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTG CCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAA AAAAAAAAAAAAAAAAAAAAAAAGCTCGTCCTCGGCCG] consensusID : consensus_14296#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1015 fasta sequence [CTCTATTTTTCCTTTTTCTGTCCATGGCGGCAGCAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGCCGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAGTACGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGTCACTGAAGAATCCCTTTGAGCACTTGCAATTCATCCATGACAATGAGTTAAATCAAAGATCTGCAAATTTGGTTTTGATAATCCATGCTTAGCATTTAGTTCCAGTTCGGTCCTGGTGGTAGAATTTGTTAGTACATCCATTAGCAAATTACTTTAGTAACTTCAGCTATCTGTTTAAAATATCACATATCATGGATTGGATTC] [+] EMBL AK105375 [CTCTATTTTTCCTTTTTCTGTCCATGGCGGCAGCAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGCCGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAGTACGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGTCACTGAAGAATCCCTTTGAGCACTTGCAATTCATCCATGACAATGAGTTAAATCAAAGATCTGCAAATTTGGTTTTGATAATCCATGCTTAGCATTTAGTTCCAGTTCGGTCCTGGTGGTAGAATTTGTTAGTACATCCATTAGCAAATTACTTTAGTAACTTCAGCTATCTGTTTAAAATATCACATATCATGGATTGGATTC] [+] EMBL CF276514 [ ATTTTTCCTTTTTCTGTCCATGGCGGCAGCAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGCCGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAGTACGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGAGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAA ] [+] EMBL CB652409 [ GCTGGCGNCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGCCGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAGTACGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGAAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGNGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCAT ] consensusID : consensus_14296#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 966 fasta sequence [CATGGNGGCANAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTNCGGCGCCTACAATGGCGCCGNCGAGCCGCCGCTCAGNCGGNGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGNCTCGTCGTCGTATCAGTACGAGGGTGGCGCANGGAGGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCCTAGCATGAGAGGATTGGTTGGGAATCG] [+] EMBL OSS3155A [CATGGNGGCANAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTNCGGCGCCTACAATGGCGCCGNCGAGCCGCCGCTCAGNCGGNGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGNCTCGTCGTCGTATCAGTACGAGGGTGGCGCANGGAGGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGGAATGGATGCATACAGGTTC ] [+] EMBL CB677500 [ GGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATAT GGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCCTAGCATGAGAGGATTGGTTGGGAATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14296#2 ------------------------------------------------------------ consensus_14296#3 ------------------------------------------------------------ consensus_14296#0 TACTCCAAGTTGATGGCACCAAACATTGAAAATTCACTGTCATGGCAGATGGAAGTCTGA 60 consensus_14296#1 ------------------------------------------------------------ consensus_14296#2 ------------------------------------------------------------ consensus_14296#3 ------------------------------------------------------------ consensus_14296#0 GGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTAT 120 consensus_14296#1 ------------------------------------------------------------ consensus_14296#2 ------------------------------------------------------------ consensus_14296#3 ------------------------------------------------------------ consensus_14296#0 CGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAG 180 consensus_14296#1 ------------------------------------------------------------ consensus_14296#2 ------------------------------------------------------------ consensus_14296#3 ------------------------------------------------------------ consensus_14296#0 ATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAA 240 consensus_14296#1 ------------------------------------------------------------ consensus_14296#2 -----------------------------------------------CTCTATTTTTCCT 13 consensus_14296#3 ------------------------------------------------------------ consensus_14296#0 TCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGA 300 consensus_14296#1 ------------------------------------------------------------ consensus_14296#2 TTTTCTGTCCATGGCGGCAGCAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCT 73 consensus_14296#3 ---------CATGGNGGCAN-AGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCT 50 consensus_14296#0 CTTTCTGCTCTAATGGCTAT--GCAACTG-GCCTGTTTGCACCAGGCCGTTGTTCGCCCT 357 consensus_14296#1 --------CCGAATCGGCAC--GAGGCTG-GCCTGTTTGCACCACCCCGATGTTCGCCCT 49 * * * * * *** * * ** * **** *** consensus_14296#2 CCTTGCTG-----TCGTCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGC 128 consensus_14296#3 CCTTGCTG-----TCGTCGCTTNCGGCGCCTACAATGGCGCCGNCGAGCCGCCGCTCAGN 105 consensus_14296#0 GGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATC 417 consensus_14296#1 GGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATC 109 * * * * * * * * * ** * * ** ** consensus_14296#2 CGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAG----TA 184 consensus_14296#3 CGGNGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGNCTCGTCGTCGTATCAG----TA 161 consensus_14296#0 ATCAACTACTTGCCCACGCGGAAACTGTTCGGT-TGTACAAAGCGAAATATCAGGCCTTA 476 consensus_14296#1 ATCAACTACTTGCCCACGCGGAAACTGTTCGGT-TGTACAAAGCGAAATATCAGGCCTTA 168 *** **** * ** * ***** * ** ****** ** consensus_14296#2 CGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCA 244 consensus_14296#3 CGAGGGTGGCGCANGGAGGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCA 221 consensus_14296#0 CAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCC 536 consensus_14296#1 CAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCC 228 * * ** * * * * * * * * * * * * ** consensus_14296#2 GCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGC-TTCGGATTCCTACC--A 301 consensus_14296#3 GCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGC-TTCGGATTCCTACC--A 278 consensus_14296#0 AAATCCAACGATGAT-GCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGA 595 consensus_14296#1 AAATCCAACGATGAT-GCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGA 287 * *** ** ** ** * * * ** * ** **** * * consensus_14296#2 TCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGG-AATGGATGCATACAGGTTCT 360 consensus_14296#3 TCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGGAATGGATGCATACAGGTTCT 338 consensus_14296#0 TCCCCTCATTAGAGGCGACTACCCCCT-AAGCATGAGAGGATTGGTTGGGAATCGCTTGC 654 consensus_14296#1 TCCCCTCATTAGAGGCGACTACCCCCT-AAGCATGAGAGGATTGGTTGGGAATCGCTTGC 346 ** * ** ** * ** * * *** ** * * * *** ** * * ** consensus_14296#2 C-CATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAA 419 consensus_14296#3 C-CATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAA 397 consensus_14296#0 CACAGTTCAC---TAAAGAACAGTCTAAGTTGG----TCAAGGGTGCATTTGACTTTATT 707 consensus_14296#1 CACAGTTCAC---TAAAGAACAGTCTAAGTTGG----TCAAGGGTGCATTTGACTTTATT 399 * ** *** ** * * ** ** * * * * ***** * * ** consensus_14296#2 GGCATAAAGTACTACAAT---AATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCG 476 consensus_14296#3 GGCATAAAGTACTACAAT---AATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCG 454 consensus_14296#0 GGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCC----- 762 consensus_14296#1 GGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCC----- 454 ** * ** ******* * ** * ** * ** * * * * consensus_14296#2 TTTATTACC-CTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATT 535 consensus_14296#3 TTTATTACC-CTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATT 513 consensus_14296#0 TTAACAACAGCTATACCACCGATTCTCGAGCTAATCTT--ACCGGTGTACGAAATGGCAT 820 consensus_14296#1 TTAACAACAGCTATACCACCGATTCTCGAGCTAATCTT--ACCGGTGTACGAAATGGCAT 512 ** * ** ** * **** * *** * * * * * * ***** * consensus_14296#2 TCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTT 595 consensus_14296#3 TCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTT 573 consensus_14296#0 CCCCA----TAGGACCGCAGGCTGCTTCACC--TTGGCTTTACGTCTACCCTCAAGGCTT 874 consensus_14296#1 CCCCA----TAGGACCGCAGGCTGCTTCACC--TTGGCTTTACGTCTACCCTCAAGGCTT 566 * * ** * * * *** * * * * *** * * * ** consensus_14296#2 TGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGG 655 consensus_14296#3 TGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGG 633 consensus_14296#0 CCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGA 934 consensus_14296#1 CCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGA 626 ***** * ** * * *** * ** *** * * ** consensus_14296#2 CTATGCAACTGGCCTGTTTG-CACCAGGCCGTTGTTCGCCCTGGGAG-----AAGGGAAA 709 consensus_14296#3 CTATGCAACTGGCCTGTTTG-CACCAGGCCGTTGTTCGCCCTGGGAG-----AAGGGAAA 687 consensus_14296#0 AAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGA 994 consensus_14296#1 AAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGA 686 *** ** ** ** * * * ** ** * ** **** * consensus_14296#2 TTGCAGTGTTGGAGATT--CAGGAAGGGAGCCTTACACTGC---ATGCCATCATCAACTA 764 consensus_14296#3 TTGCAGTGTTGGAGATT--CAGGAAGGGAGCCTTACACTGC---ATGCCATCATCAACTA 742 consensus_14296#0 CGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGG 1054 consensus_14296#1 CGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGG 746 ** * * * * * ** * **** * **** *** ** * * consensus_14296#2 CTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATA---TCAGGTCACTGAAGAA 821 consensus_14296#3 CTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATA---TCAGGCCTTACAAAAA 799 consensus_14296#0 AGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGG 1114 consensus_14296#1 AGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGG 806 * * * * ** * ** * ** *** ** * ** consensus_14296#2 TCCCTTTGAGCA--CTTG--CAA--TTCATCCATGACAATGAGTTAAATCAAAGATCTGC 875 consensus_14296#3 GG-----GAAGA--TTGGAATAA--CTCTGGTCTCGCACTGGTTTGTTCCCT---TCTCC 847 consensus_14296#0 CTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCC 1174 consensus_14296#1 CTACACAGTTCGATTTGGGATAAACTTCGTAAATTACAATGACGGAAGGAAAAAATACCC 866 * * * ** ** * ** ** * * consensus_14296#2 AAATTTGGTTTTGATAATCCATGCTTAGCATTTAGTTCCAGTTCGGTCCTGGTG----GT 931 consensus_14296#3 CGCTCCAAATCCAACGATG-ATGCTGCAAAGCGTGCTATAGACT--TCATGTTT----GG 900 consensus_14296#0 CAAG--AACTCTGCCCATTGGTTC-AAGAAGTTCCTCCTGAAATGATAAAAAAGCACCAT 1231 consensus_14296#1 CAAG--AACTTTGCCCATTGGTTC-AAGAAGTTCCTCCTGAAATGATAAAAAAGCACCAT 923 * ** * * * * consensus_14296#2 AGAATTTGTTAGTACATCCATT-AGCAA--ATTACTTTAGTAACTTCAGCTATCTGTTTA 988 consensus_14296#3 ATGGTTTATGGATCCCCTCATT-AGAGGCGACTACCCCCCTAGCATGAGAGGATTGGTTG 959 consensus_14296#0 TGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAATTTGGTA 1291 consensus_14296#1 TGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAATTTGGTA 983 * * * **** * * * * * * * consensus_14296#2 AAATATCACATATC---------ATGGATTGGATTC----------------------- 1015 consensus_14296#3 GGA-ATCG--------------------------------------------------- 966 consensus_14296#0 CAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTGCTGCAAAAAAAAAAA 1350 consensus_14296#1 AAAGAAAAAAAAA----------AAAAAAAAAGCTCGTCCTCGGCCG------------ 1020 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||