These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 603 fasta sequence [TTTTTTTTTTTTTTTTTTTTTT---GTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA-CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAGCACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGAGAGAAGGCGGGGGTGG-GAGGGGA--TTTTGC-TATTATTAACCGGAGCGGGCGCTTGCCCCCCTTG] [+] EMBL CA760208 [TTTTTTTTTTTTTTTTTTTTTTAACGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGGGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCAATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTACCGGTTGTTGGCGAGCCCCTCGACAATAAACTCGTTGACGACNTANCTGAGCACCCTCCCAAACAGGTTCCCGCCGCCGGCCATGGCAAAAAGCAGGAGGAAGCTTCCAAAGAGAAGGC GGGGTGGAGGGGGGAATTTTTGCTTATTATTAACCGGA CGGGCGCTTGCCCCCCTTG] [-] EMBL CA998900 [ TTTTTTTTT GTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGACTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCT ] [-] EMBL BI799936 [ TTTTTT TTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAA GGTTTCTT ] [-] EMBL AK121759 [ TGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAGCACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGAGAGAAGGCGGGGGTGG GAGGGGA TTTTGC TATTATTAACCGGAGCGG ] [+] EMBL BI305888 [ TCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATTGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ] [+] EMBL BI305745 [ TCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ] [-] EMBL CF313864 [ GAGTTAACTTATGCAGGATTTCTCCATTACANAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAGCACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGAGAGAAGGCGGGGGTGG GAGGGGA TTTTGC TATTATTAACCGGAGCGG ] consensusID : consensus_14342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 313 fasta sequence [TAGG-AC--ACCAACGAAC-GTTTAAATGCGGGTCTATCATTCC-GTCATCATCAAGAGTTAACTTATGCA-GGATTTCTCC--A-TTACA-AA-GTATA-C-TC--GGAAG-ATAAT-A-GGGAAGTACGACA-T-G-AAA-GTGGTCTGATTTCTACTTATCAA-GTTCACAAAAATTGAGATCACAT-GGTTTCTATACAA-GGGTTTCTTCCAT-GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCA] [+] EMBL CB965517 [TAGGAACAAACCAACGAACNGTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC ANTTACACAAGGTATA C TCCNGGAAG ATAAT AGGGGAAGTACGACA T G AAA GGGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ] [+] EMBL CB966518 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATACC TC GGAAG ATAAT A GGGAAGTACGACA T G AAA GGGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACATGGGTTTCTATACAAGGGGTTTCTTCCATGGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATGGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ] [+] EMBL BI306496 [TAGG AC ACCCACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAAAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTTTA C TC GGAAA ATAAT A GGGAAGTCCCACA T G AAA GGGGGCTGATTTCTACTTATCAA GTTCACAAAAATTGAAATCACAT GGTTTCTATACAA TGGTTTCTTCCAT GCCACAATTTAAAAAAATAGCAATCATAGCCCTAGGAAAGCCCATAGCAAAATTGTACAGTTAGCAACCACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCA] [+] EMBL CB967345 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TC GGAAG ATAAT A GGGAAGTACGACA T G AAA GTGGTCTGATTTCTACTTATCAA GTTCACAAAAATGGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATGGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ] [+] EMBL BU673540 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TC GGAAG ATAAT A GGGAAGTACGACA T G AAA GTGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ] [+] EMBL CB966262 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TC GGAAG ATAAT A GGGAAGTACGACA T G AAA GTGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ] [+] EMBL BU673215 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCACGGATTTCTCCCNA TTACA AA GTATA CNTC GGAAG ATAATCA GGGAAGTACGACA T GCCAA GTGGTC ] [+] EMBL BU673320 [ G AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCCGGTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TC GGAAG ATAAT A GGGAAGTACGACA TGG AAAGGTGGTCTGATTTCTACTTATCAAGGTTCACAAAAATGGAGATCACATGGGTTTCTATACAAGGGGTTTCTTCCATGGCGACAATATta ] [+] EMBL CB967316 [ TCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TCN GGAAGAATAAT A GGGAAGTACGACAGT G AAA GTGGTCg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14342#0 TTTTTTTTTTTTTTTTTTTTTTGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAG 60 consensus_14342#1 ------TAGGACACCAACGAACGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAG 54 * ************************************** consensus_14342#0 TTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGA 120 consensus_14342#1 TTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGA 114 ************************************************************ consensus_14342#0 CATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCT 180 consensus_14342#1 CATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCT 174 ************************************************************ consensus_14342#0 ATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGC 240 consensus_14342#1 ATACAAGGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGC 234 ****** ***************************************************** consensus_14342#0 CGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCA 300 consensus_14342#1 CGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCA 294 ************************************************************ consensus_14342#0 CTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCT 360 consensus_14342#1 CTGCCTGAAATGATCATCA----------------------------------------- 313 ******************* consensus_14342#0 CACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCT 420 consensus_14342#1 ------------------------------------------------------------ consensus_14342#0 CTGGAAGGTACGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAG 480 consensus_14342#1 ------------------------------------------------------------ consensus_14342#0 CACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGA 540 consensus_14342#1 ------------------------------------------------------------ consensus_14342#0 GAGAAGGCGGGGGTGGGAGGGGATTTTGCTATTATTAACCGGAGCGGGCGCTTGCCCCCC 600 consensus_14342#1 ------------------------------------------------------------ consensus_14342#0 TTG 603 consensus_14342#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||