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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1342 fasta sequence
[TCGTCGAGAAAAATGGGGAGGCTTCCACTCCTCCTCCTCCTCGCCGCCGCCGCCGTCTCCACCGCCGGCGGCGCGCCGGTGTACCGGGCTGACTACCTGGTGGACGGCAACCAGCTGGTGGACATGCAGTACCACATGGGCCCCGTCGTGTCGGGGTCGCCGACGAACCTCTACCTCATCTGGTACGGCCGGTGGGAGGCCGCGGCGCAGGCGGTGCTCCGAGACTTCCTCGCCTCGCTCTCGGCCCCGGCGGCGCCGTCCCCGGCGGTGTCCGACTGGTGGGCGCGCGCGCCGCGGCTGTACGCGGACCAGACGGGCGCCAACGTGACGGGCGCGTTCGCCGTCGCCGGCGAGCGCTCCGACGCCGGGTACTCGCACGGCGCGTCGCTGCGGCGGATCGACATGCAGTCCGTCATCCGCTCCGCCGTGTACGCCTACCCGGACCCGCTCCCGCTCGACCCCTACAGCGGCGTCTACCTGGTGCTCACCTCGCCGGACGTCCAGGTGGAGGAGTTCTGCCGCGCCGTCTGCGGCTTCCACTACTTCACCTTCGCCTCCGTCGTCGGCGTCACCGTGCCGTACGCGTGGGTCGGGAACAGCGCCACGCAGTGCCCGGGCAAGTGCGCGTACCCGTTCGCCGCGCCGGACTACGGCGGCGGCGCCGGTGGGCAGCAGGTGCTGCGGCCGCCGAACGGCGACGTCGGGGTGGACGGGATGGTGATCGTGCTCGGGCACGAGCTGGCGGAGCTGGCGACGAACCCGCTGGTGAACGCGTGGTACGCCGGAGACACGCCCACGGCGCCGACGGAGATCGCCGACCTCTGCCTCGGCGTGTACGGCGACGGCGGCGGCGCGGGCGGGCTCGTCGGGAACGTGTCGCGCGCCGCCGACGGCGCCTCCTACAACGTCAACGGCGTCAACGGCCGGCGGTTCATGGTGCAGTGGCTCTGGAACCCCGTCCGCGGCGCGTGCTACGGCCCCAACTCCAGCAGCTGACCGCCGCCGCCATGGCCGCCGGGATTCTTGCGAGGATGGATCACTCGATGCCATTGCGCTCAATGGCTAGTAGAAACGGAAGACTCCATGGGCAGATTCAGAGCTCGACACCTGAAAACGTCGCACCAATTTGATCTGATCCCTTTCTTGATCAGAGATTCGGGGTGGGTTTTGTTCAGATCGGGAGAAATTCTTTGGGTTCTGAATTCTGATCGATCTGTAGGAGTGAGAAGCATGCAATTTTTTTCATTTCAATTTATTTTATTTGCAGCATAAATTATGATCGATTTAGGGGAATAGAATTGCATTAGTAGAATTCCAGCTTGTTTCAAGCTTCCTCTTGCTT]
[+] EMBL AK064235 [TCGTCGAGAAAAATGGGGAGGCTTCCACTCCTCCTCCTCCTCGCCGCCGCCGCCGTCTCCACCGCCGGCGGCGCGCCGGTGTACCGGGCTGACTACCTGGTGGACGGCAACCAGCTGGTGGACATGCAGTACCACATGGGCCCCGTCGTGTCGGGGTCGCCGACGAACCTCTACCTCATCTGGTACGGCCGGTGGGAGGCCGCGGCGCAGGCGGTGCTCCGAGACTTCCTCGCCTCGCTCTCGGCCCCGGCGGCGCCGTCCCCGGCGGTGTCCGACTGGTGGGCGCGCGCGCCGCGGCTGTACGCGGACCAGACGGGCGCCAACGTGACGGGCGCGTTCGCCGTCGCCGGCGAGCGCTCCGACGCCGGGTACTCGCACGGCGCGTCGCTGCGGCGGATCGACATGCAGTCCGTCATCCGCTCCGCCGTGTACGCCTACCCGGACCCGCTCCCGCTCGACCCCTACAGCGGCGTCTACCTGGTGCTCACCTCGCCGGACGTCCAGGTGGAGGAGTTCTGCCGCGCCGTCTGCGGCTTCCACTACTTCACCTTCGCCTCCGTCGTCGGCGTCACCGTGCCGTACGCGTGGGTCGGGAACAGCGCCACGCAGTGCCCGGGCAAGTGCGCGTACCCGTTCGCCGCGCCGGACTACGGCGGCGGCGCCGGTGGGCAGCAGGTGCTGCGGCCGCCGAACGGCGACGTCGGGGTGGACGGGATGGTGATCGTGCTCGGGCACGAGCTGGCGGAGCTGGCGACGAACCCGCTGGTGAACGCGTGGTACGCCGGAGACACGCCCACGGCGCCGACGGAGATCGCCGACCTCTGCCTCGGCGTGTACGGCGACGGCGGCGGCGCGGGCGGGCTCGTCGGGAACGTGTCGCGCGCCGCCGACGGCGCCTCCTACAACGTCAACGGCGTCAACGGCCGGCGGTTCATGGTGCAGTGGCTCTGGAACCCCGTCCGCGGCGCGTGCTACGGCCCCAACTCCAGCAGCTGACCGCCGCCGCCATGGCCGCCGGGATTCTTGCGAGGATGGATCACTCGATGCCATTGCGCTCAATGGCTAGTAGAAACGGAAGACTCCATGGGCAGATTCAGAGCTCGACACCTGAAAACGTCGCACCAATTTGATCTGATCCCTTTCTTGATCAGAGATTCGGGGTGGGTTTTGTTCAGATCGGGAGAAATTCTTTGGGTTCTGAATTCTGATCGATCTGTAGGAGTGAGAAGCATGCAATTTTTTTCATTTCAATTTATTTTATTTGCAGCATAAATTATGATCGATTTAGGGGAATAGAATTGCATTAGTAGAATTCCAGCTTGTTTCAAGCTTCCTCTTGCTT]
consensusID : consensus_1437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1034 fasta sequence
[TGGTGCTCACCTCGCCGGACGTCCAGGTGGAGGAGTTCTGCCGCGCCGTCTGCGGCTTCCACTACTTCACCTTCGCCTCCGTCGTCGGCGTCACCGTGCCGTACGCGTGGGTCGGGAACAGCGCCACGCAGTGCCCGGGCAAGTGCGCGTACCCGTTCGCCGCGCCGGACTACGGCGGCGGCGCCGGTGGGCAGCAGGTGCTGCGGCCGCCGAACGGCGACGTCGGGGTGGACGGGATGGTGATCGTGCTCGGGCACGAGCTGGCGGAGCTGGCGACGAACCCGCTGGTGAACGCGTGGTACGCCGGGGACACGCCCACGGCGCCGACGGAGATCGCCGACCTCTGCCTCGGCGTGTACGGCGACGGCGGCGGCGCGGGCGGGCTCGTCGGGAACGTGTCGCGCGCCGCCGACGGCGCCTCCTACAACGTCAACGGCGTCAACGGCCGGCGGTTCATGGTGCAGTGGCTCTGGAACCCCGTCCGCGGCGCGTGCTACGGCCCCAACTCCAGCAGCTGACCGCCGCCGCCATGGCCGCCGGGATTCTTGCGAGGATGGATCACTCGATGCCATTGCGCCTAATGGCTAGTAGAAACGGAAGACTCCATGGGCGGGTTCAGAGCTCGACACCTTGAAACGTCCGACCAATTTGATCTGATCCCTTCTTGATCAGAGATTCCGGGTGGGTTTTGGTCATATCCGGAAGAAATACTTTGGGTTCTGAATCTGATCGATCTTGACGAGGGGGAAGCTTGCTTTCTGTTCATTTAAATTATTTTATTGGCCGATAAATGTTAACGATGAGGGGATTAGATGCGTTCTGCAATGCCACCTTGAATAAAATAAAAAAAAAACTACAGGAGCGTGCGAGCGATGTGTTAATGTAGACAGACACCTGTGGGTGGCGGGTCGATACNGTCTGTGTAATGTTGTTGCGCCGTCATGCCTGCTATAACGTCGGAGNGAAACCTGNTTACACGGTTGGGTTGAGGCTTCGCGTCCTGTGATGAGGATAACTCGTGCGTCTCCCTCACT]
[+] EMBL BE040705 [TGGTGCTCACCTCGCCGGACGTCCAGGTGGAGGAGTTCTGCCGCGCCGTCTGCGGCTTCCACTACTTCACCTTCGCCTCCGTCGTCGGCGTCACCGTGCCGTACGCGTGGGTCGGGAACAGCGCCACGCAGTGCCCGGGCAAGTGCGCGTACCCGTTCGCCGCGCCGGACTACGGCGGCGGCGCCGGTGGGCAGCAGGTGCTGCGGCCGCCGAACGGCGACGTCGGGGTGGACGGGATGGTGATCGTGCTCGGGCACGAGCTGGCGGAGCTGGCGACGAACCCGCTGGTGAACGCGTGGTACGCCGGGGACACGCCCACGGCGCCGACGGAGATCGCCGACCTCTGCCTCGGCGTGTACGGCGACGGCGGCGGCGCGGGCGGGCTCGTCGGGAACGTGTCGCGCGCCGCCGACGGCGCCTCCTACAACGTCAACGGCGTCAACGGCCGGCGGTTCATGGTGCAGTGGCTCTGGAACCCCGTCCGCGGCGCGTGCTACGGCCCCAACTCCAGCAGCTGACCGCCGCCGCCATGGCCGCCGGGATTCTTGCGAGGATGGATCACTCGATGCCATTGCGCCTAATGGCTAGTAGAAACGGAAGACTCCATGGGCGGGTTCAGAGCTCGACACCTTGAAACGTCCGACCAATTTGATCTGATCCCTTCTTGATCAGAGATTCCGGGTGGGTTTTGGTCATATCCGGAAGAAATACTTTGGGTTCTGAATCTGATCGATCTTGACGAGGGGGAAGCTTGCTTTCTGTTCATTTAAATTATTTTATTGGCCGATAAATGTTAACGATGAGGGGATTAGATGCGTTCTGCAATGCCACCTTGAATAAAATAAAAAAAAAACTACAGGAGCGTGCGAGCGATGTGTTAATGTAGACAGACACCTGTGGGTGGCGGGTCGATACNGTCTGTGTAATGTTGTTGCGCCGTCATGCCTGCTATAACGTCGGAGNGAAACCTGNTTACACGGTTGGGTTGAGGCTTCGCGTCCTGTGATGAGGATAACTCGTGCGTCTCCCTCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1437#0 TCGTCGAGAAAAATGGGGAGGCTTCCACTCCTCCTCCTCCTCGCCGCCGCCGCCGTCTCC 60
consensus_1437#1 ------------------------------------------------------------
consensus_1437#0 ACCGCCGGCGGCGCGCCGGTGTACCGGGCTGACTACCTGGTGGACGGCAACCAGCTGGTG 120
consensus_1437#1 ------------------------------------------------------------
consensus_1437#0 GACATGCAGTACCACATGGGCCCCGTCGTGTCGGGGTCGCCGACGAACCTCTACCTCATC 180
consensus_1437#1 ------------------------------------------------------------
consensus_1437#0 TGGTACGGCCGGTGGGAGGCCGCGGCGCAGGCGGTGCTCCGAGACTTCCTCGCCTCGCTC 240
consensus_1437#1 ------------------------------------------------------------
consensus_1437#0 TCGGCCCCGGCGGCGCCGTCCCCGGCGGTGTCCGACTGGTGGGCGCGCGCGCCGCGGCTG 300
consensus_1437#1 ------------------------------------------------------------
consensus_1437#0 TACGCGGACCAGACGGGCGCCAACGTGACGGGCGCGTTCGCCGTCGCCGGCGAGCGCTCC 360
consensus_1437#1 ------------------------------------------------------------
consensus_1437#0 GACGCCGGGTACTCGCACGGCGCGTCGCTGCGGCGGATCGACATGCAGTCCGTCATCCGC 420
consensus_1437#1 ------------------------------------------------------------
consensus_1437#0 TCCGCCGTGTACGCCTACCCGGACCCGCTCCCGCTCGACCCCTACAGCGGCGTCTACCTG 480
consensus_1437#1 ----------------------------------------------------------TG 2
**
consensus_1437#0 GTGCTCACCTCGCCGGACGTCCAGGTGGAGGAGTTCTGCCGCGCCGTCTGCGGCTTCCAC 540
consensus_1437#1 GTGCTCACCTCGCCGGACGTCCAGGTGGAGGAGTTCTGCCGCGCCGTCTGCGGCTTCCAC 62
************************************************************
consensus_1437#0 TACTTCACCTTCGCCTCCGTCGTCGGCGTCACCGTGCCGTACGCGTGGGTCGGGAACAGC 600
consensus_1437#1 TACTTCACCTTCGCCTCCGTCGTCGGCGTCACCGTGCCGTACGCGTGGGTCGGGAACAGC 122
************************************************************
consensus_1437#0 GCCACGCAGTGCCCGGGCAAGTGCGCGTACCCGTTCGCCGCGCCGGACTACGGCGGCGGC 660
consensus_1437#1 GCCACGCAGTGCCCGGGCAAGTGCGCGTACCCGTTCGCCGCGCCGGACTACGGCGGCGGC 182
************************************************************
consensus_1437#0 GCCGGTGGGCAGCAGGTGCTGCGGCCGCCGAACGGCGACGTCGGGGTGGACGGGATGGTG 720
consensus_1437#1 GCCGGTGGGCAGCAGGTGCTGCGGCCGCCGAACGGCGACGTCGGGGTGGACGGGATGGTG 242
************************************************************
consensus_1437#0 ATCGTGCTCGGGCACGAGCTGGCGGAGCTGGCGACGAACCCGCTGGTGAACGCGTGGTAC 780
consensus_1437#1 ATCGTGCTCGGGCACGAGCTGGCGGAGCTGGCGACGAACCCGCTGGTGAACGCGTGGTAC 302
************************************************************
consensus_1437#0 GCCGGAGACACGCCCACGGCGCCGACGGAGATCGCCGACCTCTGCCTCGGCGTGTACGGC 840
consensus_1437#1 GCCGGGGACACGCCCACGGCGCCGACGGAGATCGCCGACCTCTGCCTCGGCGTGTACGGC 362
***** ******************************************************
consensus_1437#0 GACGGCGGCGGCGCGGGCGGGCTCGTCGGGAACGTGTCGCGCGCCGCCGACGGCGCCTCC 900
consensus_1437#1 GACGGCGGCGGCGCGGGCGGGCTCGTCGGGAACGTGTCGCGCGCCGCCGACGGCGCCTCC 422
************************************************************
consensus_1437#0 TACAACGTCAACGGCGTCAACGGCCGGCGGTTCATGGTGCAGTGGCTCTGGAACCCCGTC 960
consensus_1437#1 TACAACGTCAACGGCGTCAACGGCCGGCGGTTCATGGTGCAGTGGCTCTGGAACCCCGTC 482
************************************************************
consensus_1437#0 CGCGGCGCGTGCTACGGCCCCAACTCCAGCAGCTGACCGCCGCCGCCATGGCCGCCGGGA 1020
consensus_1437#1 CGCGGCGCGTGCTACGGCCCCAACTCCAGCAGCTGACCGCCGCCGCCATGGCCGCCGGGA 542
************************************************************
consensus_1437#0 TTCTTGCGAGGATGGATCACTCGATGCCATTGCGCTCAATGGCTAGTAGAAACGGAAGAC 1080
consensus_1437#1 TTCTTGCGAGGATGGATCACTCGATGCCATTGCGCCTAATGGCTAGTAGAAACGGAAGAC 602
*********************************** ***********************
consensus_1437#0 TCCATGGGCAGATTCAGAGCTCGACACCTGAAAACGTCGCACCAATTTGATCTGATCCCT 1140
consensus_1437#1 TCCATGGGCGGGTTCAGAGCTCGACACCTTGAAACGTCCGACCAATTTGATCTGATCCCT 662
********* * ***************** ******* ********************
consensus_1437#0 TTCTTGATCAGAGATTCGGGGTGGGTTTTGTTCAGATC-GGGAGAAATTCTTTGGGTTCT 1199
consensus_1437#1 T-CTTGATCAGAGATTCCGGGTGGGTTTTGGTCATATCCGGAAGAAATACTTTGGGTTCT 721
* *************** ************ *** *** ** ****** ***********
consensus_1437#0 GAATTCTGATCGATCTGTAGGAGTGAGAAGCATGCAATTTTTTTCATTTCAATTTATTTT 1259
consensus_1437#1 GAAT-CTGATCGATCTTGACGAGGGGGAAGCTTGCT-TTCTGTTCATTTAAATT-ATTTT 778
**** *********** * *** * ***** *** ** * ******* **** *****
consensus_1437#0 ATTTGCAGCATAAATTATGATCGATTTAGGGGAATAGAATTGCATTAGTAGAATTCCAGC 1319
consensus_1437#1 ATTGGCCG-ATAAATGTTAA-CGATG-AGGGGATTAGA--TGCGTTC-TGCAATGCCACC 832
*** ** * ****** * * **** ****** **** *** ** * *** *** *
consensus_1437#0 TTGTTTCAAGCTTCCTCTTGCTT------------------------------------- 1342
consensus_1437#1 TTGAATAAAATAAAAAAAAAACTACAGGAGCGTGCGAGCGATGTGTTAATGTAGACAGAC 892
*** * ** *
consensus_1437#0 ------------------------------------------------------------
consensus_1437#1 ACCTGTGGGTGGCGGGTCGATACNGTCTGTGTAATGTTGTTGCGCCGTCATGCCTGCTAT 952
consensus_1437#0 ------------------------------------------------------------
consensus_1437#1 AACGTCGGAGNGAAACCTGNTTACACGGTTGGGTTGAGGCTTCGCGTCCTGTGATGAGGA 1012
consensus_1437#0 ----------------------
consensus_1437#1 TAACTCGTGCGTCTCCCTCACT 1034
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||