These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1927 fasta sequence [GCTATTGATTGATTGATTGCTGATCGCTTCCAGTTCCAGCAATCCGTCGGAATATCTCCCCCCGATCTCCTCTTCTTCTTATCCACGCGCGGCACGACACGAGCAGCTTTTTGCCTGCGGCCGCTGCTGCTTCTGTGTGAGATTGTTCGCTGGGGATGGACGGCGGTGGCCAGGGCGTCGCGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCG-TGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCTCCCTCAAGAGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTGCT-TTTTTGGGGAA-TTCTGTT-G-CAAG-GCG-GTTACTCCCA-TGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAGGTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATTGTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGACTGGGATTTCAGAGTGTCAGATGTTAAAAATCCAAACTTCGGCAAAATCTTGACGGTGACATGTGGTACAC-GGGGAAAATTAAGTCCTCCTTGCAATGCTGTAGGTTATATTGACCGTAAAGTTCTTGGTATCAATCATATGTACCACAGGCCAGCATGGAGGAGGCACAAGGACTGTACTGATGATTCCCCACATGAGGGACCTTTTAAAACTGATTCCCCGGCGTGGTGTTATGCACCATTTGAACCTGAAGGGTTACTAAGCTCACTGTCCGCGGTGTTGAGTACGATCATCGGGGTGCATTATGGGCATGTGCTTGTTCATATGAAGAGCCACACGGACAGACTAAAGCAGTGGTCTATCATGGGCATAACTCTCCTCATTCTTGGGCTTACTCTGCACTTTTCACATGCAATTCCTTTG-AACAA-GCAACTG-TACACCTTCAGTTATATCTGTGTTACTGCCGGTGCGGCTGGAATCGTGTTCTGCATGTTCTACTTCCTGGTTGACATCCTGAATCTGCACTACCCATTCGCACCCCTGAAATGGACCGGCATGAACGCGATGCTGGTGTACGTGATGGCGGCGGCAGGCATCTTCGAAGGG--TTCTT-GAA-CGGGTGGTAC-TACGAGGGCACC-AACAACAC-ACTGGTTTACTGGGTGAGGAAGCATGTGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTCTACGTCCTCTTCGCGCAGATCTTGTTCTGGGCCCTTGTCGCCGGCCTCCTCCACCGTGCTCGCCTCTACTGGAAGCTCTAGCACTGCACTGGTACACTACACTACACT-ACAGCGTTTACACAGGGGCTGTTCGGATTGATGTCAT-TTTCAACCGAACTATTTTTTTTAAAATT-ACCAAAAAGAAGT-GTTGCATTTAGTTTGTTGCCAAACT-TTGATAAATACAT-AAGAAATCCT-ACCAAAATTTTGATAACATTGTTAACTTGTCAAAATTTGGTAAGGTTTATTTTCGCTACAATCTGAATAGCCTAGTCTTCAGATTTCTCGTTGATGGAATTGTGCATTTAGCCGTGATTAAAATTTGAAACCACAAGTGCAATTGGGATCTT] [+] EMBL AK068780 [GCTATTGATTGATTGATTGCTGATCGCTTCCAGTTCCAGCAATCCGTCGGAATATCTCCCCCCGATCTCCTCTTCTTCTTATCCACGCGCGGCACGACACGAGCAGCTTTTTGCCTGCGGCCGCTGCTGCTTCTGTGTGAGATTGTTCGCTGGGGATGGACGGCGGTGGCCAGGGCGTCGCGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCG TGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCTCCCTCAAGAGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTGCT TTTTTGGGGAA TTCTGTT G CAAG GCG GTTACTCCCA TGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAGGTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATTGTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGACTGGGATTTCAGAGTGTCAGATGTTAAAAATCCAAACTTCGGCAAAATCTTGACGGTGACATGTGGTACAC GGGGAAAATTAAGTCCTCCTTGCAATGCTGTAGGTTATATTGACCGTAAAGTTCTTGGTATCAATCATATGTACCACAGGCCAGCATGGAGGAGGCACAAGGACTGTACTGATGATTCCCCACATGAGGGACCTTTTAAAACTGATTCCCCGGCGTGGTGTTATGCACCATTTGAACCTGAAGGGTTACTAAGCTCACTGTCCGCGGTGTTGAGTACGATCATCGGGGTGCATTATGGGCATGTGCTTGTTCATATGAAGAGCCACACGGACAGACTAAAGCAGTGGTCTATCATGGGCATAACTCTCCTCATTCTTGGGCTTACTCTGCACTTTTCACATGCAATTCCTTTG AACAA GCAACTG TACACCTTCAGTTATATCTGTGTTACTGCCGGTGCGGCTGGAATCGTGTTCTGCATGTTCTACTTCCTGGTTGACATCCTGAATCTGCACTACCCATTCGCACCCCTGAAATGGACCGGCATGAACGCGATGCTGGTGTACGTGATGGCGGCGGCAGGCATCTTCGAAGGG TTCTT GAA CGGGTGGTAC TACGAGGGCACC AACAACAC ACTGGTTTACTGGGTGAGGAAGCATGTGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTCTACGTCCTCTTCGCGCAGATCTTGTTCTGGGCCCTTGTCGCCGGCCTCCTCCACCGTGCTCGCCTCTACTGGAAGCTCTAGCACTGCACTGGTACACTACACTACACT ACAGCGTTTACACAGGGGCTGTTCGGATTGATGTCAT TTTCAACCGAACTATTTTTTTTAAAATT ACCAAAAAGAAGT GTTGCATTTAGTTTGTTGCCAAACT TTGATAAATACAT AAGAAATCCT ACCAAAATTTTGATAACATTGTTAACTTGTCAAAATTTGGTAAGGTTTATTTTCGCTACAATCTGAATAGCCTAGTCTTCAGATTTCTCGTTGATGGAATTGTGCATTTAGCCGTGATTAAAATTTGAAACCACAAGTGCAATTGGGATCTT] [-] EMBL BI799240 [ TCTGTGTGAGATTGTTCGCTGGGGATGGACGG GGTGGCCAGGGCGTCGCGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCG CG CGCGG GACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCGCTGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCTCCCTCAAGAGGATTCCAGACCG GGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTGCTCCCTTTGGGGAACTTCTGTTCGCCAAGCGCGCGTTACTCCCATTGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAc ] [+] EMBL CB639333 [ TGTGAGATTGTTCGCTGGGGATGGACGGCGGTGGCCAGGGCGTCGCGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCG TGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCTCCCTCAAGAGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTGCT TTTTTGGGGAA TTCTGTT G CAAG GCG GTTACTCCCA TGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAA ] [+] EMBL CB680035 [ CGCTGGGGATGGACGGCGGTGGCCAGGGCGTCGCGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCG TGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCTCCCTCAAGAGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTGCT TTTTTGGGGAA TTCTGTT G CAAG GCG GTTACTCCCA TGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAGGTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATTGTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGACTGGGATTTCACAGTGTCAGATGTTACAAATCCACACTTCGGCAACATCTTGACGGTGACATG ] [+] EMBL AK059213 [ GGATGGACGGCGGTGGCCAGGGCGTCGCGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCG TGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCTCCCTCAAGAGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTGCT TTTTTGGGGAA TTCTGTT G CAAG GCG GTTACTCCCA TGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAGGTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATTGTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGACTGGGATTTCAGAGTGTCAGATGTTAAAAATCCAAACTTCGGCAAAATCTTGACGGTGACATGTGGTACAC GGGGAAAATTAAGTCCTCCTTGCAATGCTGTAGGTTATATTGACCGTAAAGTTCTTGGTATCAATCATATGTACCACAGGCCAGCATGGAGGAGGCACAAGGACTGTACTGATGATTCCCCACATGAGGGACCTTTTAAAACTGATTCCCCGGCGTGGTGTTATGCACCATTTGAACCTGAAGGGTTACTAAGCTCACTGTCCGCGGTGTTGAGTACGATCATCGGGGTGCATTATGGGCATGTGCTTGTTCATATGAAGAGCCACACGGACAGACTAAAGCAGTGGTCTATCATGGGCATAACTCTCCTCATTCTTGGGCTTACTCTGCACTTTTCACATGCAATTCCTTTG AACAA GCAACTG TACACCTTCAGTTATATCTGTGTTACTGCCGGTGCGGCTGGAATCGTGTTCTACATGTTCTACTTCCTGGTTGACATCCTGAATCTGCACTACCCATTCGCACCCCTGAAATGGACCGGCATGAACGCGATGCTGGTGTACGTGATGGCGGCGGCAGGCATCTTCGAAGGG TTCTT GAA CGGGTGGTAC TACGAGGGCACC AACAACAC ACTGGTTTACTGGGTGAGGAAGCATGTGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTCTACGTCCTCTTCGCGCAGATCTTGTTCTGGGCCCTTGTCGCCGGCCTCCTCCACCGTGCTCGCCTCTACTGGAAGCTCTAGCACTGCACTGGTACACTACACTACACT ACAGCGTTTACACAGGGGCTGTTCGGATTGATGTCAT TTTCAACCGAACTATTTTTTTTAAAATT ACCAAAAAGAAGT GTTGCATTTAGTTTGTTGCCAAACT TTGATAAATACAT AAGAAATCCT ACCA ] [+] EMBL CB643449 [ ACACCGTATCTGCT TTTTTGGGGAA TTCTGTT G CAAG GCG GTTACTCCCA TGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAGGTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATTGTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGACTGGGATTTCAGAGTGTCAGATGTTAAAAATCCAAACTTCGGCAAAATCTTGACGGTGACATGTGGTACAC GGGGAAAATTAAGTCCTCCTTGCAATGCTGTAGGTTATATTGACCGTAAAGTTCTTGGTATCAATCATATGTACCACAGGCCAGCATGGAGGAGGCACAAGGACTGTACTGATGATTCCCCACATGAGGGACCTTTTAAAACTGATTCCCCGGCGTGGTGTTATGCACCATTTGAACCTGAAGGGTTACTAAGCTCACTGTCCGCGGTGTTGAGTACGATCATCGGGGTGCATTATGGGCATGTGCTTGTTCATATGAAGAGCCACACGGACAGACTAAAGCAGTGGTCTATCATGGGCATAACTCTCCTCATTCTTGGGCTTACTCTGCACTTTTCACATGCAATTCCTTTG AACAA GCAACTG TACACCTTCAGTTATAT ] [+] EMBL BE229341 [ CGAGTTTCAGGATGTACTTCTCCCAGTGGATTGTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGACTGGGATTTCAGAGTGTCAGATGTTAAAAATCCAAACTTCGGCAAAATCTTGACGGTGACATGTGGTACACGGGGGAAAATTAAGTCCTCCTTGCAATGCTGTAGGTTATATTGACCGTAAAGTTCTTGGTATCAATCATATGTACCACAGGCCAGCATGGAGGRGGCACAAGGCCTKTACTGATGATTCCCCACATGAGGGMCCTTTTAAAACTGATTCCCCGGCGTGGTGTTATGCACCATTTGAACCTGAAGGGTTACTAAGCTCACTGTCCGCGGTGTTGAGTACGACAAYCGGGGTGCA TATGGGCAWGT CTTTTTCATATG AGAGCCACACGGACAGACTAAAGCAGTGGTCTATCATGGGCATAACTCTCCTCATTCTTGGGCTTACTCTGCACTTKTCACAKGCAATSCCTGTGTATCAAGGCAACTGTTACACCGTCAGTgt ] [-] EMBL CB680036 [ AGGGTTACTAAGCTCACTGTCCGCGGTGTTGAGTACGATCATCGGGGTGCATTATGGGCATGTGCTTGTTCATATGAAGAGCCACACGGACAGACTAAAGCAGTGGTCTATCATGGGCATAACTCTCCTCATTCTTGGGCTTACTCTGCACTTTTCACATGCAATTCCTTTG AACAA GCAACTG TACACCTTCAGTTATATCTGTGTTACTGCCGGTGCGGCTGGAATCGTGTTCTGCATGTTCTACTTCCTGGTTGACATCCTGAATTTGCACTACCCATTCGCACCCCTGAAATGGACCGGCATGAACGCGATGCTGGTGTACGTGATGGCGGCGGCAGGCATTTTTGAAGGG TTTTT GAA CGGGTGGTAC TACGAGGGCACC AACAACAC ACTGGTTTACTGGGTGAGGAAGCATGTGTTTGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTTTACGTCCTTTTCGCGCAGATTTTGTTTTGGGCCCTTGTCGCCGGCCTCCTCCACCGTGCTTGCCTTTACTGGAAGCTTTAGCACTGCACTGGTACACTACACTACACT ACAGCGTTTACACAGGGGCTGTTCGGATTGATGTCAT TTTCAACCGAACTATTTTTTTTAAAATT ACCAAAAAGAAGT GTTGCATTTAGTTTGTTGCCAAACT TTGATAAATACAT AAGAAATCCT ACCAAAATTTTGATAACATTGTTAACTTGTCAAAATTTGGTAAGGTTTATTTTCGCTACAATTTGAATAGCCTAGTTTTCAGA ] [-] EMBL CB652555 [ TCGGGGTGCATTATGGGCATGTGCTTGTTCATATGAAGAGCCACACGGACAGACTAAAGCAGTGGTCTATCATGGGCATAACTCTCCTCATTCTTGGGCTTACTCTGCACTTTTCACATGCAATTCCTTTG AACAA GCAACTG TACACCTTCAGTTATATCTGTGTTACTGCCGGTGCGGCTGGAATCGTGTTCTGCATGTTCTACTTCCTGGTTGACATCCTGAATCTGCACTACCCATTCGCACCCCTGAAATGGACCGGCATGAACGCGATGCTGGTGTACGTGATGGCGGCGGCAGGCATCTTCGAAGGG TTCTT GAA CGGGTGGTAC TACGAGGGCACC AACAACAC ACTGGTTTACTGGGTGAGGAAGCATGTGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTCTACGTCCTCTTCGCGCAGATCTTGTTCTGGGCCCTTGTCGCCGGCCTCCTCCACCGTGCTCGCCTCTACTGGAAGCTTTAGCACTGCACTGGTACACTACACTACACT ACAGCGTTTACACAGGGGCTGTTCGGATTGATGTCAT TTTCAACCGAACTATTTTTTTTAAAATT ACCAAAAAGAAGT GTTGCATTTAGTTTGTTGCCAAACT TTGATAAATACAT AAGAAATCCT ACCAAAATTTTGATAACATTGTTAACTTGTCAAAATTTGGTAAGGTTTATTTTCGCTACAATCTGAATAGCCTAGTCTTCAGATTTCTCGTTGATGGAATTGTGCATTTACCCnt ] [-] EMBL CB643450 [ ACTCTCCTCATTCTGGGGCTTACTCTGCACTTTTCACATGCAATTCCTTTG AACAA GCAACTG TACACCTTCAGTTATATCTGTGTTACTGCCGGTGCGGCTGGAATCGTGTTCTGCATGTTCTACTTCCTGGTTGACATCCTGAATCTGCACTACCCATTCGCACCCCTGAAATGGACCGGCATGAACGCGATGCTGGTGTACGTGATGGCGGCGGCAGGCATCTTCGAAGGG TTCTT GAA CGGGTGGTAC TACGAGGGCACC AACAACAC ACTGGTTTACTGGGTGAGGAAGCATGTGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTCTACGTCCTCTTCGCGCAGATCTTGTTCTGGGCCCTTGTCGCCGGCCTCCTCCACCGTGCTCGCCTTTACTGGAAGCTCTAGCACTGCACTGGTACACTACACTACACT ACAGCGTTTACACAGGGGCTGTTCGGATTGATGTCAT TTTCAACCGAACTATTTTTTTTAAAATT ACCAAAAAGAAGT GTTGCATTTAGTTTGTTGCCAAACT TTGATAAATACAT AAGAAATCCT ACCAAAATTTTGATAACATTGTTAACTTGTCAAAATTTGGTAAGGTTTATTTTCGGTACAATCTGAATAGCCTAGTCTTCAGATTTCTCGTTGATGGAATTGTGCATTTAGCCGTGATTAAAATTAGGAACCACAAGTGCAATTGGGA ] [-] EMBL CB681692 [ CAATTCCTTTG AACAA GCAACTG TACACCTTCAGTTATATCTGTGTTACTGCCGGTGCGGCTGGAATCGTGTTCTGCATGTTCTACTTCCTGGTTGACATCCTGAATCTGCACTACCCATTCGCACCCCTGAAATGGACCGGCATGAACGCGATGCTGGTGTACGTGATGGCGGCGGCAGGCATCTTCGAAGGG TTCTT GAA CGGGTGGTAC TACGAGGGCACC AACAACAC ACTGGTTTACTGGGTGAGGAAGCATGTGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTCTACGTCCTCTTCGCGCAGATCTTGTTTTGGGCCCTTGTCGCCGGCCTCCTCCACCGTGCTCGCCTTTACTGGAAGCTCTAGCACTGCACTGGTACACTACACTACACT ACAGCGTTTACACAGGGGCTGTTCGGATTGATGTCAT TTTCAACCGAACTATTTTTTTTAAAATT ACCAAAAAGAAGT GTTGCATTTAGTTTGTTGCCAAACT TTGATAAATACAT AAGAAATCCT ACCAAAATTTTGATAACATTGTTAACTTGTCAAAATTTGGTAAGGTTTATTTTCGCTACAATCTGAATAGCCTAGTCTTCAGATTTCTCGTTGATGGAATTGTGCATTTAGCCGTGATTAAAATTTGAAACCCCAAGTGCAA ] [+] EMBL BM037719 [ AAGGGGTTTCTTGGAACCGGGTGGTACTTACGAGGGCACCTAACAACACAACTGGTTTACTGGGTGAGGAAGCATGTGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCT TACGTCCTCTTCGCGCAGATCTTGTTCTGGGCCCTTGTCGCCGGCCTCCTCCACCGTGCTCGCCTCTACTGGAAGCTCTAGCACTGCACTGGTACACTACACTACACTGACAGCGTTTACACAGGGGCTGTTCGGATTGATGTCATGTGTCAACCAAACTATTTTTTTTAAAATTGACCCAAAAGAAGTGGTTGCATTTAGTTTGTTGCCAAACTGTTGATAAATACATGAAGAAATCCTGACCCAAATTTTGATAACATTGTTAACTTGTCAAAATTTGGTAAGGTTTATTTTCGCTACAATCTGAATAGCCTAGTCTTCAGATTTCTCGTTGATGGAATTGTGCATTTAGCCGTGANTAAAATTNGAAAaaa ] consensusID : consensus_14382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 847 fasta sequence [GTCGGCATATCTCTCCCCGATCTCCTCTTCTTCTTATCCACGCGCGGCACGACACGAGCAGCTTTTTGCCTGCGGCCGCTGCTGCTTCTGTGTGAGATTGTTCGCTGGGGATGGACGGCGGTGGCCAGGGCGTCGCGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCGTGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCTCCCTCAAGCAAACATGCAGAGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTGCTTTTTTGGGGAATTCTGTTGCAAGGCGGTTACTCCCATGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAGGTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATTGTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGACTGGGATTTCCGAGTGTCAGATGTTAAAAATCCAAACTTCGGCAAAATCTTGACG] [+] EMBL CB681691 [GTCGGCATATCTCTCCCCGATCTCCTCTTCTTCTTATCCACGCGCGGCACGACACGAGCAGCTTTTTGCCTGCGGCCGCTGCTGCTTCTGTGTGAGATTGTTCGCTGGGGATGGACGGCGGTGGCCAGGGCGTCGCGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCGTGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCTCCCTCAAGCAAACATGCAGAGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTGCTTTTTTGGGGAATTCTGTTGCAAGGCGGTTACTCCCATGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAGGTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATTGTTG ] [+] EMBL CB639334 [ TGTGAGATTGTTCGCTGGGGATGGACGGCGGTGGCCATGGCGTCTCGCGGCGGCACAGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCTACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCATCATGTTTTTTGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATA ] [+] EMBL CB652554 [ GAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGGGGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGACCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCGTGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCTCCCTCAAGCAAACATGCAGAGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTGCTTTTTTGGGGAATTCTGTTGCAAGGCGGTTACTCCCATGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAGGTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATTGTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGACTGGGATTTCCGAGTGTCAGATGTTAAAAATCCAAACTTCGGCAAAATCTTGACG] consensusID : consensus_14382#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CTAAAAGGGCGGTGGTGGTTCTGTGTGAGATTGTCGTGGGGATGGACGGGGGTGGGCAGGGGTCGCGGGGACGGGCGGTGGGGGAGGAGGATCCGAACGCGCGGGGACGGTCGGGGAAAGAAGTGACGACGACGGGGTCACGTCACGAAAGGGCCTCCGCTCGCGGACAAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCTCACCGTCGCTCTGATGATACTGGTGGACGGGCCGGCGGCGAGTGGCGGTGATAGGCACGCGCCGTGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGTATTCCCCTCTCCCTCAAGAGGATTCCAGACGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTTGCTCCTTTGGGGAATTCTTGTTGCAAGGGGGTTACTCCCATGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTTGTCTTGCATACTTGGTGGTTGGAGTTCTAGAGATCGTAAGAAGAATGGAAGATTCAGGACAGTCAAGTCGGGGTTCTCGAT] [-] EMBL BI799033 [CTAAAAGGGCGGTGGTGGTTCTGTGTGAGATTGTCGTGGGGATGGACGGGGGTGGGCAGGGGTCGCGGGGACGGGCGGTGGGGGAGGAGGATCCGAACGCGCGGGGACGGTCGGGGAAAGAAGTGACGACGACGGGGTCACGTCACGAAAGGGCCTCCGCTCGCGGACAAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCTCACCGTCGCTCTGATGATACTGGTGGACGGGCCGGCGGCGAGTGGCGGTGATAGGCACGCGCCGTGGAACGGATGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGTATTCCCCTCTCCCTCAAGAGGATTCCAGACGCGGTCGAGCTGTGAGGAGAGTAGTGCTCAGGACACTGAAGCTTGCTCCTTTGGGGAATTCTTGTTGCAAGGGGGTTACTCCCATGCCCCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAAAGGATTTGTCTTGCATACTTGGTGGTTGGAGTTCTAGAGATCGTAAGAAGAATGGAAGATTCAGGACAGTCAAGTCGGGGTTCTCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14382#0 GCTATTGATTGATTGATTGCTGATCGCTTCCAGTTCCAGCAATCCGTCGGAATATCTCCC 60 consensus_14382#1 ---------------------------------------------GTCGGCATATCTCTC 15 consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 CCCGATCTCCTCTTCTTCTTATCCACGCGCGGCACGACACGAGCAGCTTTTTGCCTGCGG 120 consensus_14382#1 CCCGATCTCCTCTTCTTCTTATCCACGCGCGGCACGACACGAGCAGCTTTTTGCCTGCGG 75 consensus_14382#2 ----------------------------------------------------CTAAAAGG 8 ** consensus_14382#0 CCGCTGCTGCTTCTGTGTGAGATTGTTCGCTGGGGATGGACGGCGGTGGCCAGGGCGTCG 180 consensus_14382#1 CCGCTGCTGCTTCTGTGTGAGATTGTTCGCTGGGGATGGACGGCGGTGGCCAGGGCGTCG 135 consensus_14382#2 GCGGTGGTGGTTCTGTGTGAGATTGTC--GTGGGGATGGACGGGGGTGGGCAGGG-GTCG 65 ** ** ** **************** ************* ***** ***** **** consensus_14382#0 CGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGG 240 consensus_14382#1 CGCGGCGGCACGGCGCGGTGGCGGAGGAGGATCCCGACCGCCGCCGCGGCGACCGCTCGG 195 consensus_14382#2 CG----GGGACGG-GCGGTGGGGGAGGAGGATCCGAACG-----CGCGGGGAC-GGTCGG 114 ** ** **** ******* ************ ** ***** *** * **** consensus_14382#0 GGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGA 300 consensus_14382#1 GGAAAGAAGGTGACGACGACGGCGTCGACGTCGACGAGAAGGCGCCTCCGCCTCGCCGGA 255 consensus_14382#2 GGAAAGAAG-TGACGACGACGGGGTC-ACGTC-ACGAAAGGGC--CTCCGC-TCGC-GGA 167 ********* ************ *** ***** **** * *** ****** **** *** consensus_14382#0 CCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATAC 360 consensus_14382#1 CCAGCAGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGCCTCACCGTCGCTCTGATGATAC 315 consensus_14382#2 CA---AGGCGGGTCGCGTCGCTCGACGTCTTCCGTGGC-TCACCGTCGCTCTGATGATAC 223 * ********************************* ********************* consensus_14382#0 TGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCGTGGAACGGATGCA 420 consensus_14382#1 TGGTGGACGGCGCCGGCGGCGAGTGGCCGGTGATAGGCCACGCGCCGTGGAACGGATGCA 375 consensus_14382#2 TGGTGGACGG-GCCGGCGGCGAGTGGC-GGTGATAGGC-ACGCGCCGTGGAACGGATGCA 280 ********** **************** ********** ********************* consensus_14382#0 ACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCT 480 consensus_14382#1 ACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGGCTATTCCCCTCT 435 consensus_14382#2 ACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCGTTGGCATGG-TATTCCCCTCT 339 ************************************************ *********** consensus_14382#0 CCCTCAAG-----------AGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCT 529 consensus_14382#1 CCCTCAAGCAAACATGCAGAGGATTCCAGACCGCGGTCGAGCTGTGAGGAGAGTAGTGCT 495 consensus_14382#2 CCCTCAAG-----------AGGATTCCAGAC-GCGGTCGAGCTGTGAGGAGAGTAGTGCT 387 ******** ************ **************************** consensus_14382#0 CAGGACACTGAAGCT-GCTTTTTTGGGGAATTCT-GTTGCAAGGCGGTTACTCCCATGCC 587 consensus_14382#1 CAGGACACTGAAGCT-GCTTTTTTGGGGAATTCT-GTTGCAAGGCGGTTACTCCCATGCC 553 consensus_14382#2 CAGGACACTGAAGCTTGCTCCTTTGGGGAATTCTTGTTGCAAGGGGGTTACTCCCATGCC 447 *************** *** ************* ********* *************** consensus_14382#0 CCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAA 647 consensus_14382#1 CCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAA 613 consensus_14382#2 CCTGATGATTTGTCTTATGGAGTTGACATGAAGCACGTGAGATGGTGTGGTATTCTCCAA 507 ************************************************************ consensus_14382#0 AGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAG 707 consensus_14382#1 AGGATTGCTCTTGCATACTTGGTGGTTGCAGTTCTAGAGATCGTAACGAAGAATGCAAAG 673 consensus_14382#2 AGGATTTGTCTTGCATACTTGGTGGTTGGAGTTCTAGAGATCGTAA-GAAGAATG-GAAG 565 ****** ******************** ***************** ******** *** consensus_14382#0 GTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATT 767 consensus_14382#1 GTTCAGGACCAGTCAAGTTCGGGCTTCTCGATTTTCAGGATGTACTTCTCCCAGTGGATT 733 consensus_14382#2 ATTCAGGAC-AGTCAAGT-CGGGGTTCTCGAT---------------------------- 595 ******** ******** **** ******** consensus_14382#0 GTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGAC 827 consensus_14382#1 GTTGCATGTTGCATCCTTGTGATCTACCTGTCCCTTGTATATGGGATTTATGTTCCTGAC 793 consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 TGGGATTTCAGAGTGTCAGATGTTAAAAATCCAAACTTCGGCAAAATCTTGACGGTGACA 887 consensus_14382#1 TGGGATTTCCGAGTGTCAGATGTTAAAAATCCAAACTTCGGCAAAATCTTGACG------ 847 consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 TGTGGTACACGGGGAAAATTAAGTCCTCCTTGCAATGCTGTAGGTTATATTGACCGTAAA 947 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 GTTCTTGGTATCAATCATATGTACCACAGGCCAGCATGGAGGAGGCACAAGGACTGTACT 1007 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 GATGATTCCCCACATGAGGGACCTTTTAAAACTGATTCCCCGGCGTGGTGTTATGCACCA 1067 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 TTTGAACCTGAAGGGTTACTAAGCTCACTGTCCGCGGTGTTGAGTACGATCATCGGGGTG 1127 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 CATTATGGGCATGTGCTTGTTCATATGAAGAGCCACACGGACAGACTAAAGCAGTGGTCT 1187 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 ATCATGGGCATAACTCTCCTCATTCTTGGGCTTACTCTGCACTTTTCACATGCAATTCCT 1247 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 TTGAACAAGCAACTGTACACCTTCAGTTATATCTGTGTTACTGCCGGTGCGGCTGGAATC 1307 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 GTGTTCTGCATGTTCTACTTCCTGGTTGACATCCTGAATCTGCACTACCCATTCGCACCC 1367 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 CTGAAATGGACCGGCATGAACGCGATGCTGGTGTACGTGATGGCGGCGGCAGGCATCTTC 1427 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 GAAGGGTTCTTGAACGGGTGGTACTACGAGGGCACCAACAACACACTGGTTTACTGGGTG 1487 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 AGGAAGCATGTGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTCTACGTC 1547 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 CTCTTCGCGCAGATCTTGTTCTGGGCCCTTGTCGCCGGCCTCCTCCACCGTGCTCGCCTC 1607 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 TACTGGAAGCTCTAGCACTGCACTGGTACACTACACTACACTACAGCGTTTACACAGGGG 1667 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 CTGTTCGGATTGATGTCATTTTCAACCGAACTATTTTTTTTAAAATTACCAAAAAGAAGT 1727 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 GTTGCATTTAGTTTGTTGCCAAACTTTGATAAATACATAAGAAATCCTACCAAAATTTTG 1787 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 ATAACATTGTTAACTTGTCAAAATTTGGTAAGGTTTATTTTCGCTACAATCTGAATAGCC 1847 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 TAGTCTTCAGATTTCTCGTTGATGGAATTGTGCATTTAGCCGTGATTAAAATTTGAAACC 1907 consensus_14382#1 ------------------------------------------------------------ consensus_14382#2 ------------------------------------------------------------ consensus_14382#0 ACAAGTGCAATTGGGATCTT 1927 consensus_14382#1 -------------------- consensus_14382#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||