These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1158 fasta sequence [TCAAGGCNCTCATGCCCGTCGCCGTGTACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGT-GT-CCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCG-CATCGCGGCATA---CNAGG-NC-CTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGC-TTCGAGGCCA---GGTCCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTC-GCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTCGTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT-CCTGGCACACACAAATTGGGTAT-CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT-GTT-ACCCTGTTATTTATT-CAGCT-ATT---T-T-TGTTCCA-GAGAAAGACA-GCCT-CGTTGCCTCTCTCGCTCATTGCCTA-AAATTTATTT-GTTCTACT-AGTAGCCT-A-GGTA-CTAAAAAT-GT-ACTT-CT-ACATATT-GGTATTTT-GGT-GGTTATCTTCTATATATAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTATTTCTACCTTTTCAATTNGAANG-CTTTATCAAC-TGAGGCATCAAAAAAAAAAA] [+] EMBL D42552 [TCAAGGCNCTCATGCCCGTCGCCGTGTACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGT GTNCCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCG CATCGCGGCATA CNAGG NC CTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGC TTCGAGGCCA GGTCCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTC GCTTCCTGCTCGTGCCGTGGGTGTTCGTCGA ] [+] EMBL AK071846 [ TACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGTCGT CCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCCATCGCCGCATACGGCGAGGCGCGCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCGTTCGAGGCCACGCGGCTCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTCGTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT CCTGGCACACACAAATTGGGTAT CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTT ACCCTGTTATTTATT CAGCT ATT T T TGTTCCA GAGAAAGACA GCCT CGTTGCCTCTCTCGCTCATTGCCTA AAATTTATTT GTTCTACT AGTAGCCT A GGTA CTAAAAAT GT ACTT CT ACATATT GGTATTTT GGT GGTTATCTTCTATATATAATGAGCTTACTGTAAT ] [+] EMBL AU056889 [ TCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTCGTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT CCTGGCACACACAAATTGGGTAT CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTT ACCCTGTTATTTATT CAGCT ATT T T TGTTCCA GAGAAAGACA GCCT CGTTGCCTCTCTCGCTCATTGCCTA AAATTTANTT GTTCTACT AGTAGCCT AGGGTA CTAAAAAT GT ACTT C ] [+] EMBL CA758907 [ AAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTCGTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCTTTCTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT CCTGGCACACACAAATTGGGTAT CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTT ACCCTGTTATTTATT CAGCT ATT T T TGTTCCA GAGAAAGACA GCCT CGTTGCCTCTCTCGCTCATCGCCTA AAATTTATTT GTTCTACT AGTAGCCT A GGTA CTAAAAAT GT ACTT CT A ] [+] EMBL AU056890 [ GCCTTCTTGGGGGTGGCATACTACANCCACGTCAAGCTGCNGGCGCTCAAGGCGAAGGAGGCNCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCCTGGCACACACAAATTGGGTATCCTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTT ACCCTGTTATTTATT CAGCT ATT T T TGTTCCA GAGAAAGACA GCCT CGTTGCCTCTCTCGCTCATTGCCTA AAATTTATTT GTTCTACT AGTAGCCT A GGTA CTAAAAAT GT ACTT CT ACATATT GGTATTTT GGT GGTTATCTTCTATAAAAAAaa ] [+] EMBL BM419281 [ nGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT CCTGGCACACACAAATTGGGTAT CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTTGACCCTGTTATTTATTGCAGCTGATTGTGT TGTGTCCCA GAGAAAGACA GCCTGCGTTGCCTCTCTCGCTCCTCGCCTA AAATTTATTTGGTTCTACTGAGTAGCCTGA GGTA CTAAAAATGGTGACTTGCTGACATATTGGGTATTTTGGGTGGGTTATCTTCTATATA AANGAGCTTACTGTAATATTATAATCTACTGCTGTGTATTTCTACCTTTTCAATTNGAANGNCTTTATCAAC TGAGGCATCAAAAAA ] [+] EMBL BM420496 [ ccgCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCATGGTT ACCCTGTTATTTATT CAGCT ATT TGT TGTTCCACGAGAAAGACACCCCT CGTTGCCTCTCTCGCTCATCGCCTANCAATTTATTT GTTCTACT AGTAGCCT A GGTACCTAAAAAT GT ACTT CT ACATATT GGTATTTT GGT GGTTATCTTCTATATA AATGAGCTTACTGTAATATTATAATCTACTGCTGTGTATTTCTACCTTTTCAATTTGAATG GTTTATCCACTTGATGCATCCAAAAAAAAAA] [+] EMBL CA764385 [ aaggggGTTGCCTCTCTCGCTCATTGCCTA AAATTTATTT GTTCTACT AGTAGCCT A GGTA CTAAAAAT GT ACTT CT ACATATT GGTATTTT GGT GGTTATCTTCTATATATAATGAGCTTACTGTAATATTATAAaaaaaaaaa ] consensusID : consensus_14385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1074 fasta sequence [TACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGTCGTCCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCCATCGCCGCATACGGCGAGGCGCGCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCGTTCGAGGCCACGCGGCTCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCG-CGCTGAATCTGGCGGTGTTC-TTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTG-ATCGCCTTCTCGTGGTCCGTGAT-CCGGGACACGGTCACGCCGATCAACCT-GTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTA-CAACCACGTCAA-GCTGCAGGCGCTCAAGGCG-AAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTA-GGAGAGCAATAAATTATGGAGTAAAATGTGATCTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTTTTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTGTAGTCTATATAATCACTATATCCACTTAGTTGCAACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATTGCTAAAGTACTCTTGAATGTTGTTCAAAAA] [+] EMBL AK059987 [TACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGTCGTCCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCCATCGCCGCATACGGCGAGGCGCGCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCGTTCGAGGCCACGCGGCTCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCG CGCTGAATCTGGCGGTGTTC TTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTG ATCGCCTTCTCGTGGTCCGTGAT CCGGGACACGGTCACGCCGATCAACCT GTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTA CAACCACGTCAA GCTGCAGGCGCTCAAGGCG AAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTA GGAGAGCAATAAATTATGGAGTAAAATGTGATC ] [+] EMBL OSS1203A [ CAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCG CGCTGAATCTGGCGGTGTTC TTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTG ATCGCCTTCTCGTGGTCCGTGAT CCGGGA ] [+] EMBL BQ907056 [ TCGCCGCTGAATCT GCGGTGTTCTTTGCTCGTCGGCAAGACCTCCGCGCTCACCATGGACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGTATCGCCTTCTCGTGGTCCGTGAT CCGGGACAC GTCACGCCGATCAACCT GTTCGGCTACGGGATCGCTTTCTT GGGGTGGCATACTA CAACCACGTCAAGGCTGCAGGCGCTCAAGGCG AAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTACGGAGAGCAATAAATTATGGAGTAAAATGTGATCTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTTTTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAAaaaaaaaa ] [+] EMBL AU071043 [ CGCCGGGGTGGTCAAGGACTGGCTGCTG ATCGCCTTCTCGTGGTCCGTGATCCCGGGACACGGTCACGCCGATCAACCTGGTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTACCAACCACGTCAA GCTGCAGGCGCTCAAGGCGAAAGGAGGCGCAGAAGNAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTA GGAGAGCAATAAATTATGGAGTAAAATGTGATCTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTTTTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTGTAGTCTATATAATCACTATATCCACTTAGTTGCAACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATTGCTAAAGTACTCTTGAATGTTGTTCAAAAA] [+] EMBL CA998325 [ GTGAT CCGGGACACGGTCACGCCGATCAACCT GTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTA CAACCACGTCAA GCTGCAGGCGCTCAAGGCG AAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTA GGAGAGCAATAAATTATGGAGTAAAATGTGATCTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTTTTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTGTAGTCTATATAATCACTATATCCACTT ] consensusID : consensus_14385#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1011 fasta sequence [TACTCCCTCGCCGTCGCGTTCCGCACCGACTCCTTCCGCCGCGCCTCCATGCTCAACATGCTCGGCATCTCCGCGGGCGTCGCCGTCGCGGCCTACGGCGAGGCTCGGTTCGACGCGTTCGGCGTCATGCTGCAGCTCGCCGCCGTCGCCGCCGAGGCCACGCGGCTCGTGCTCATCCAGATACTGCTCACCTCCAAGGGCATGTCGCTGAACCCCATCACCTCGCTCTACTACATCGCGCCGTGCTGCCTCGTGTTCTTGACGCTGCCATGGTACTTCGTCGAGCTGCCGCGGCTGCGCGCCGCCGCGGGCGCCGCCGCCCGGCCCGACGTGTTCGTGTTCGGGACGAACTCGCTGTGCGCGTTCGCGCTCAACCTGGCGGTGTTCCTGCTGGTGGGGAAGACGTCGGCGCTGACCATGAACGTGGCCGGCGTCGTCAAGGACTGGCTGCTCATCGCCTTCTCCTGGACAGTGATCAAGGACACCGTCACGCCGGTCAACCTCGTCGGCTATGGCATTGCCTTCCTCGGCGTCGCCTACTACAACCATGCCAAGCTGCAGGGGCTCAAGGCCAGGGAGGCAGAGAGGAGGGCCGCGTCAATGGCGACGGCGAAGGACGGCGACGCAGAAGCCGGTGCGCGGCTGCTGCCGGAGAAAGATGCCGGTGAGCAGAAGAACTGATCAAAGTCGAACACCAAGCATAGTACATTAATGAAGGTTGATAAATCAACGGCATTCCTTTGTCATCTTTAGGATGCCTGAACTGTGGTTTAATTGACCCTTGATGAACTTCAAGCTGCATATTTAAGTTTGTGACCATTCATTATCATGGAGAATACAGATCATTTTAGATATGCATTTGATTGAGGAACAATGCATGTGATTCAGCAGGAGATAGCAACACAGGAATGATTTATCCAATCCCTTTTCGTCAAAAGGGGCAAGTTATGTAGATGCATGATGTAACGGGAGAACAACTCGAAACTTCTTAATCCATTGGCTACTAAATAT] [+] EMBL AK107562 [TACTCCCTCGCCGTCGCGTTCCGCACCGACTCCTTCCGCCGCGCCTCCATGCTCAACATGCTCGGCATCTCCGCGGGCGTCGCCGTCGCGGCCTACGGCGAGGCTCGGTTCGACGCGTTCGGCGTCATGCTGCAGCTCGCCGCCGTCGCCGCCGAGGCCACGCGGCTCGTGCTCATCCAGATACTGCTCACCTCCAAGGGCATGTCGCTGAACCCCATCACCTCGCTCTACTACATCGCGCCGTGCTGCCTCGTGTTCTTGACGCTGCCATGGTACTTCGTCGAGCTGCCGCGGCTGCGCGCCGCCGCGGGCGCCGCCGCCCGGCCCGACGTGTTCGTGTTCGGGACGAACTCGCTGTGCGCGTTCGCGCTCAACCTGGCGGTGTTCCTGCTGGTGGGGAAGACGTCGGCGCTGACCATGAACGTGGCCGGCGTCGTCAAGGACTGGCTGCTCATCGCCTTCTCCTGGACAGTGATCAAGGACACCGTCACGCCGGTCAACCTCGTCGGCTATGGCATTGCCTTCCTCGGCGTCGCCTACTACAACCATGCCAAGCTGCAGGGGCTCAAGGCCAGGGAGGCAGAGAGGAGGGCCGCGTCAATGGCGACGGCGAAGGACGGCGACGCAGAAGCCGGTGCGCGGCTGCTGCCGGAGAAAGATGCCGGTGAGCAGAAGAACTGATCAAAGTCGAACACCAAGCATAGTACATTAATGAAGGTTGATAAATCAACGGCATTCCTTTGTCATCTTTAGGATGCCTGAACTGTGGTTTAATTGACCCTTGATGAACTTCAAGCTGCATATTTAAGTTTGTGACCATTCATTATCATGGAGAATACAGATCATTTTAGATATGCATTTGATTGAGGAACAATGCATGTGATTCAGCAGGAGATAGCAACACAGGAATGATTTATCCAATCCCTTTTCGTCAAAAGGGGCAAGTTATGTAGATGCATGATGTAACGGGAGAACAACTCGAAACTTCTTAATCCATTGGCTACTAAATAT] consensusID : consensus_14385#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [TCATCTATACGGGAAACGCCTGGTACAGCCACATGCAAGGTACCGTGCTCTCTGCGAATTCCCGGGTCTGACACTCTACNGCGGTCCGCCATGGTAGGCGCAAGAATCAAAGGGAATCTGTAGTTGCGTTTTTAGCGATAAAATNACGTTTGCAACTTGTGCTACACGTACATTTCTGGAGGACTAGAGTAAAACTTTCATGTTACCCTGGTTANTGGTAGTGTCAGCTAGTTGTTTGTTCCAGAGAAAGACAGACCTCGTTGCCTCTCTCGCTCTATCGCCGTAAAATTTATTTGTTCTACTAGTAGCCTAGGTACTAAAAATGTACTTCNACATATTGGTATTTTGGTGGTTATCTTCTATTATAAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTAT] [-] EMBL BM422289 [TCATCTATACGGGAAACGCCTGGTACAGCCACATGCAAGGTACCGTGCTCTCTGCGAATTCCCGGGTCTGACACTCTACNGCGGTCCGCCATGGTAGGCGCAAGAATCAAAGGGAATCTGTAGTTGCGTTTTTAGCGATAAAATNACGTTTGCAACTTGTGCTACACGTACATTTCTGGAGGACTAGAGTAAAACTTTCATGTTACCCTGGTTANTGGTAGTGTCAGCTAGTTGTTTGTTCCAGAGAAAGACAGACCTCGTTGCCTCTCTCGCTCTATCGCCGTAAAATTTATTTGTTCTACTAGTAGCCTAGGTACTAAAAATGTACTTCNACATATTGGTATTTTGGTGGTTATCTTCTATTATAAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTAT] consensusID : consensus_14385#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [TTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTNGTAGTCTATATAATCACTATATCCACTTAGTTGCAACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATTGCTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097022 [TTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTNGTAGTCTATATAATCACTATATCCACTTAGTTGCAACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATTGCTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14385#0 TCAAGGCNCTCATGCCCGTCGCCGTGTACTCCATCGGGGTGCTCTTCAAGAAGGAGACCT 60 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 ----------------TACTCCCTCGCCGTCGCGTTCCGCACCGACTCCTTCCGCCGCGC 44 consensus_14385#1 ----------------TACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGTCGTC 44 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 TCAGGTGTCCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCATCGCGGCATAC 120 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 CTCCATGCTCAACATGCTCGGCATCTCCGCGGGCGTCGCCGTCGCGGCCTACGGCGAGGC 104 consensus_14385#1 CTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCCATCGCCGCATACGGCGAGGC 104 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 NAGGNCCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCTTCGAGGCCA-G 179 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 TCGGTTCGACGCGTTCGGCGTCATGCTGCAGCTCGCCGCCGTCGCCGCCGAGGCCACGCG 164 consensus_14385#1 GCGCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCGTTCGAGGCCACGCG 164 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 GTCCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTC 239 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 GCTCGTGCTCATCCAGATACTGCTCACCTCCAAGGGCATGTCGCTGAACCCCATCACCTC 224 consensus_14385#1 GCTCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTC 224 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 TCTGTACTACGTCGCGCCGTGCTGCCTCGC-TTCCTGCTCGTGCCGTGGGTGTTCGTCGA 298 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 GCTCTACTACATCGCGCCGTGCTGCCTCGTGTTCTTGACGCTGCCATGGTACTTCGTCGA 284 consensus_14385#1 TCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGA 284 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 GCTGCCCAGGCTGCGCGCCGTCGG------CACGTTCCGCCCGGACTTCTTCGTGTTCGG 352 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 GCTGCCGCGGCTGCGCGCCGCCGCGGGCGCCGCCGCCCGGCCCGACGTGTTCGTGTTCGG 344 consensus_14385#1 GCTGCCCAGGCTGCGCGCCGTCGG------CACGTTCCGCCCGGACTTCTTCGTGTTCGG 338 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 GACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGAC 412 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 GACGAACTCGCTGTGCGCGTTCGCGCTCAACCTGGCGGTGTTCCTGCTGGTGGGGAAGAC 404 consensus_14385#1 GACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGAC 398 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 CTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTC 472 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 GTCGGCGCTGACCATGAACGTGGCCGGCGTCGTCAAGGACTGGCTGCTCATCGCCTTCTC 464 consensus_14385#1 CTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTC 458 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 GTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTT 532 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 CTGGACAGTGATCAAGGACACCGTCACGCCGGTCAACCTCGTCGGCTATGGCATTGCCTT 524 consensus_14385#1 GTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTT 518 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 CTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCA 592 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 CCTCGGCGTCGCCTACTACAACCATGCCAAGCTGCAGGGGCTCAAGGCCAGGGAGGCAGA 584 consensus_14385#1 CTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCA 578 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 GAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCA 652 consensus_14385#3 ------------------------------------------------------------ consensus_14385#2 GAGGAGGGCCGCGTCAATGGCGACGGCGA--AGGACGGCGACGCAGAAGCCGGTGCGCGG 642 consensus_14385#1 GAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCA 638 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 CAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACAC 712 consensus_14385#3 ------------------------------------------------------TCATCT 6 consensus_14385#2 CTGCTGCCGGAGAAA--------------------------------------GATGCCG 664 consensus_14385#1 CAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACAC 698 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 ACAAATTGGGTATCTGGTGCA---AAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTT 769 consensus_14385#3 ATACGGGAAACGCCTGGTACAGCCACATGCAAGGTACCGTGCTCTCTGCGAATTCCCGGG 66 consensus_14385#2 GTGAGCAGAAGAACTGAT-CA-----AAGTCGAACACCAAGCATAGTAC-ATTAATGAAG 717 consensus_14385#1 ACAAATTGGTTGGTTCTAAAT---CCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATG 755 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 GCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGG 829 consensus_14385#3 TCTGACAC-----TCTACNGCGGTCCGCCATGGTAGGCGCAAGAATCAAAGGGAATCTGT 121 consensus_14385#2 GTTGATAAA----TCAACGGCATTCCTTTGTCATCTTTAGGATGCCTGAACTGTGGTT-T 772 consensus_14385#1 TGTTTGTTCTTTACCTTGATCCGTTGTAGGAGAGCAATAAATTATGGAGTAAAATGTGAT 815 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 AGG-GCAAATCAAGGGA--ATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTAC-TT 885 consensus_14385#3 AGTTGCGTTTTTAGCGA--TAAAATNACGTTTGCAA----CTTGTGCT-ACACGTACATT 174 consensus_14385#2 AATTGACCCTTGATGAACTTCAAGCTGCATATTTAAG---TTTGTGAC--CATTCATTAT 827 consensus_14385#1 CTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTT 875 consensus_14385#4 ------------------------------------------------------------ consensus_14385#0 TCTGGAGGACTAGAGTAAA-CTTTCATGTTACCCTG-TTATTTAT----TCAGCTATTT- 938 consensus_14385#3 TCTGGAGGACTAGAGTAAAACTTTCATGTTACCCTGGTTANTGGTAGTGTCAGCTAGTTG 234 consensus_14385#2 CATGGAGAA-TACAGATCATTTTAGATATGCATTTGATTGAGGAACAATGCATGTGATTC 886 consensus_14385#1 TTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGA-----GAAGTGTAAA 930 consensus_14385#4 -----------------------------TTACTGGAGTACTAGA-----GAAGTGTAAA 26 * * * * consensus_14385#0 -TTGTTCCAGAGAAAGACAG-CCTCGTTGCCTCTCTCGCTC-ATTGCC-TAAAATTTATT 994 consensus_14385#3 TTTGTTCCAGAGAAAGACAGACCTCGTTGCCTCTCTCGCTCTATCGCCGTAAAATTTATT 294 consensus_14385#2 AGCAGGAGATAGCAACACAGGAATGATTTATCCAATCCCTT-TTCGTC--AAAAGGGGCA 943 consensus_14385#1 CATATACTATCTGAA---ATGCTTTGTTGCAACAGCCTTTG-TAGTCTATATAATCACTA 986 consensus_14385#4 CATATACTATCTGAA---ATGCTTTGTTGCAACAGCCTTTNGTAGTCTATATAATCACTA 83 * ** * * ** * * * * ** consensus_14385#0 TGTTCTACTAGTAGCCTAGGTACTAAAAATGTACTTCTACATATTGGTATTTTGGTGGTT 1054 consensus_14385#3 TGTTCTACTAGTAGCCTAGGTACTAAAAATGTACTTCNACATATTGGTATTTTGGTGGTT 354 consensus_14385#2 AGTTATGTAGATGCATGATGTAACGGGAGAACAACTCGAAAC-TTCTTAATCCATTGGCT 1002 consensus_14385#1 TATCCACTTAGTTGC--AACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATT 1044 consensus_14385#4 TATCCACTTAGTTGC--AACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATT 141 * * * ** * * * * * consensus_14385#0 ATCTTC-TATATATAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTATTTCTACC 1113 consensus_14385#3 ATCTTC-TATTATAAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTAT------- 406 consensus_14385#2 ACTAAA-TAT-------------------------------------------------- 1011 consensus_14385#1 GCTAAAGTACTCTTGAATGTTGTTCAAAAA------------------------------ 1074 consensus_14385#4 GCTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------ 183 ** consensus_14385#0 TTTTCAATTNGAANGCTTTATCAACTGAGGCATCAAAAAAAAAAA 1158 consensus_14385#3 --------------------------------------------- consensus_14385#2 --------------------------------------------- consensus_14385#1 --------------------------------------------- consensus_14385#4 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||