These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1594 fasta sequence [GCAAAGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGGGGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCATGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACTACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCG-AGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA-AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA-GTTGTTTGCTGTGTCTTGTTTGCTA-CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTACAAAAAAAAAAAGA] [+] EMBL AU094037 [GCAAAGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCNGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCG ] [+] EMBL AK103042 [ AAAGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGGGGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCATGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACTACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCG AGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCGGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATC ] [+] EMBL C27229 [ AGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTGCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAG ] [+] EMBL CB648792 [ GAGACTCGTTCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGGGGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCATGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACTACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACTTCTCCGACATCGATCACCAAGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCc ] [+] EMBL CB677336 [ GCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGGGGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCATGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACTACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGACGGACCCCGACCCATGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGGCAAGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCTGCATGGCGCAGCACGACGAG ] [+] EMBL CA758606 [ TCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGATGAGACCTTCGTCGACCACGCCGTGCCTACGTCGACCGTGGGGGACGCCGGGG ] [-] EMBL CB648793 [ GATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCG AGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTCCCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTCCCTGAAAATGGAGACTTATCGTTATGCTGTCCAAAAAAAAAAAG ] [-] EMBL CB651841 [ TTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCG AGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTT ] [+] EMBL AU094038 [ nGTGAAATTGTTCTTCGAAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGA TACCATCATTCTACTCGNATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTNCAACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGNTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGNAAAANTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTACAAAAAAAAAAAaa] [+] EMBL BM420218 [ ATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGC AAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTAAAAAAA ] [+] EMBL AU166840 [ TTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTCCGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTNTTANAANCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTAAAAAAAAAAAA ] [+] EMBL CA764551 [ ACCGNTACCGGGTTTGGTCTTTCTCTTTTTTACCTTGCACATAGCGCTTNTTAGNAGCGGGCCTGACGCTTTTGTCCTTGATGCAGNA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGNTTGCTA CTGACAACCTGATGAACTCNTTACCTGAAAATGGAGACTTATCGNTATGCTGTACAttng ] [+] EMBL BM421550 [ CTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCACAGGCCAAACTCCTGGACTTTTGTCCCTGTTCACGTTGTTT CTGTGTCTTGTTTGCTACCTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTACCAAAAAAAAAA ] consensusID : consensus_14391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1186 fasta sequence [TCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCGAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCAAGGCAAAACTCCTGGACTTTTGTCGCTGTTCAGTTGTTTGCTGTGTCTTGTTTGCTACTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATC] [+] EMBL AK061804 [TCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCGAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCAAGGCAAAACTCCTGGACTTTTGTCGCTGTTCAGTTGTTTGCTGTGTCTTGTTTGCTACTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATC] [+] EMBL CB651840 [ CGTCGACTTCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAAGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCGAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTATGTGTTGTATGTACAAGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTT ] consensusID : consensus_14391#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [GCTNCTTNCTTNTNCTCTGTCTCCTCCTCTCTAGAGAGAGTAAACAGAAAAAAGGAGGAGACTANGGNTCTGCTNCTCCCCCTGCGCCGGNTGGTCGGGATCTCTGCNTCCTACTGATTATGGTGAGAGGCTAGGCCTNNNGGATCCAACTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGNGCCTCCGCCGNCCGAGGGGGACGCCG] [+] EMBL AU181853 [GCTNCTTNCTTNTNCTCTGTCTCCTCCTCTCTAGAGAGAGTAAACAGAAAAAAGGAGGAGACTANGGNTCTGCTNCTCCCCCTGCGCCGGNTGGTCGGGATCTCTGCNTCCTACTGATTATGGTGAGAGGCTAGGCCTNNNGGATCCAACTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGNGCCTCCGCCGNCCGAGGGGGACGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14391#0 GCAAAGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAG-AAACAGAAAAAAGG 59 consensus_14391#2 -----GCTNCTTNCTTNTNCTCTGTCTCCTCCTCTCTAGAGAGAGTAAACAGAAAAAAGG 55 consensus_14391#1 ----------------------------------TCTAGAGAGAG-AAACAGAAAAAAGG 25 *********** ************** consensus_14391#0 AGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAG-CTCTGCCTCCTCCT 118 consensus_14391#2 AGGAGACTANGGNTCTGCTNCTCCCCCTGCGCCGGNTGGTCGGGATCTCTGCNTCCTACT 115 consensus_14391#1 AGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAG-CTCTGCCTCCTCCT 84 ********* ** ****** *************** ******* ****** **** ** consensus_14391#0 GATTCTGCTGTCC--CCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCC- 175 consensus_14391#2 GATTATGGTGAGAGGCTAGGCCTNNNGGATCCAACTCCTCCTCCATCTCCTTCTCCTCC- 174 consensus_14391#1 GATTCTGCTGTCC--CCTCCCCTCCCCGATCCACCTCCTCCTCCCACGTCTTCCCCGCCG 142 **** ** ** * *** ****** ********** * **** ** ** consensus_14391#0 ----------CGCCGA--TCCGATGCGTCATCACTAGC---------------------- 201 consensus_14391#2 ----------CGCCGA--TCCGATGCGTCATCACTAGC---------------------- 200 consensus_14391#1 TCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAG 202 ***** **** * * * ** consensus_14391#0 --CTCCCCTCCCGCGCTTCCACC---AACCACTGCCCCTCCACCCTCACCT-CGTGGTTT 255 consensus_14391#2 --CTCCCCTCCCGCGCTTCCACC---AACCACTGCCCCTCCACCCTCACCT-CGTGGTTT 254 consensus_14391#1 GGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGC 262 ** ** * * ** ** * * * ** ** **** * *** consensus_14391#0 GGTA--ATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCG-ATCCACCTTCCCGTTGCTG 312 consensus_14391#2 GGTA--ATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCG-ATCCACCTTCCCGTTGCTG 311 consensus_14391#1 AGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTG 322 * * *** **** ** * * ** * *** * * * ** *** consensus_14391#0 CGGGGA---TGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGG 369 consensus_14391#2 CGGGGA---TGGCCGTCGTCGAGACCTCCGCCGACCACGCCGNGCCTCCGCCGNCCGAGG 368 consensus_14391#1 AAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGA-CTGTCGTATGTGT 381 * * **** * * * * * * ** * * * * * ** * * consensus_14391#0 GGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCA 429 consensus_14391#2 GGGACGCCG--------------------------------------------------- 377 consensus_14391#1 GGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCA 441 *** *** consensus_14391#0 TGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACT 489 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 AGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCA 501 consensus_14391#0 ACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGAC 549 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 TCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGT 561 consensus_14391#0 CCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCG 609 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 GAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGAT 621 consensus_14391#0 GGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCA 669 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 GTGAAATTGTTCTTCGAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGAC 681 consensus_14391#0 CCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTA 729 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 TACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCT 741 consensus_14391#0 TCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTT 789 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 GCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAG 801 consensus_14391#0 TTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAA 849 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 ACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAG 861 consensus_14391#0 CCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTA 909 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 GTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATA 921 consensus_14391#0 ACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACT 969 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 TGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACT 981 consensus_14391#0 GCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCGAGTCGATAT 1029 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 TGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATA 1041 consensus_14391#0 GTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCT 1089 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 GCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCAAGGCAAAACTCCTGG 1101 consensus_14391#0 TTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATAC 1149 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 ACTTTTGTCGCTGTTCAGTTGTTTGCTGTGTCTTGTTTGCTACTGAGAACCTGATGAACT 1161 consensus_14391#0 TGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTC 1209 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 CGTTACCTGAAAATGGAGACTTATC----------------------------------- 1186 consensus_14391#0 GCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATA 1269 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 ------------------------------------------------------------ consensus_14391#0 GAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCC 1329 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 ------------------------------------------------------------ consensus_14391#0 TTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTAC 1389 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 ------------------------------------------------------------ consensus_14391#0 CGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACG 1449 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 ------------------------------------------------------------ consensus_14391#0 CTTTTGTCCTTGATGCAGCAAGGCAAAACTCCTGGACTTTTGTCGCTGTTCAGTTGTTTG 1509 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 ------------------------------------------------------------ consensus_14391#0 CTGTGTCTTGTTTGCTACTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATC 1569 consensus_14391#2 ------------------------------------------------------------ consensus_14391#1 ------------------------------------------------------------ consensus_14391#0 GTTATGCTGTACAAAAAAAAAAAGA 1594 consensus_14391#2 ------------------------- consensus_14391#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||