These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1122 fasta sequence [CCACGAAACCTCGCCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC--TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAAAAAAAAAAGA] [+] EMBL AU166863 [CCACGAAACCTCGCCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGT ] [+] EMBL AK119714 [ GCCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAACTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGG ] [+] EMBL CB672329 [ GCCCTCCTTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAG ] [+] EMBL AK106155 [ CCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCA ] [+] EMBL AK061030 [ CCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAAGGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGT ] [+] EMBL AK099124 [ CTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCAGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCTTTTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGT ] [+] EMBL AU069356 [ TCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCG GCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGA TTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAAGCT ] [+] EMBL CA999219 [ gCGTCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGG ] [-] EMBL CB672330 [ TGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAAAAAAAAAAGA] [+] EMBL BQ906905 [ ATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTATTACTGTGTAGCTACCTTGCC ATAACCAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCAaaaaaaa ] [+] EMBL AU100810 [ GTGTTCCGTTNCTC TTTTCTNCTTACTGTGTAGCTACNNTGCCAATAACAAGGAGATCATCAANCAGATGTGCNCTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTNTTTCTGGGGTCCNCGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTNTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAAAAAAAAAAa ] consensusID : consensus_14422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [TCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGAATCTCTTGGAATTGAAGCCAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTTGGAAAGAAGCTTTGCTTAATGGATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGGTGAGGTCTAGTCACCCTAAGAATGGCTCTAGATGACTTTGGGGATTACTGGTGAGAATGTGGGCCCTTGGCTGGTATATAGAAGAGCTCGTAATCTGGTATAGCGGTCATGAATATCTGGATCATTTGGCTGAGGAAATTTCTCGGAGAAGTGGTAATGAGTGGGGCTTAATGTACCCTGAAAGCCGGCAGGGGAAGGTCCAAGGGAAGAGCCCCTGTGCCCTAGGCTNTAGATCTTGCGCTTAGGTTGAGAGTTGCAACTACATGTGACATATTTTGGGA] [+] EMBL AW155290 [TCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGAATCTCTTGGAATTGAAGCCAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTTGGAAAGAAGCTTTGCTTAATGGATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGGTGAGGTCTAGTCACCCTAAGAATGGCTCTAGATGACTTTGGGGATTACTGGTGAGAATGTGGGCCCTTGGCTGGTATATAGAAGAGCTCGTAATCTGGTATAGCGGTCATGAATATCTGGATCATTTGGCTGAGGAAATTTCTCGGAGAAGTGGTAATGAGTGGGGCTTAATGTACCCTGAAAGCCGGCAGGGGAAGGTCCAAGGGAAGAGCCCCTGTGCCCTAGGCTNTAGATCTTGCGCTTAGGTTGAGAGTTGCAACTACATGTGACATATTTTGGGA] consensusID : consensus_14422#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence [GTGCATGTGTAGGTCCGA-TGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCAT-GCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCGTTTTCTTATTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTC-AATTCCTTGCATGAGCCCTGATATGAGCTCTATTGAGTACTTCCTTCATTTTATAATGTAAGACTTTCTTATATTAAAAAAAAAAAAAANNAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANAAAAAAA] [+] EMBL BI796716 [GTGCATGTGTAGGTCCGA TGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCAT GCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCGTTTTCTTATTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTC AATTCCTTGCATGAGCCCTGATATGAGCTCTATTGAGTACTTCCTTCATTTTATAATGTAAGACTTTCTTATATTAAAAAAA ] [+] EMBL CA757804 [ agGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAA TTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAATTCCTTGCATGAGCCCTGATATGAGCTCTATTGAGTACTTCCTTCATTTTATAATGTAAGACTTTCTTATATTAAAAAAAAAAAAAANNAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANAAAAAAA] consensusID : consensus_14422#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [CGCCTCCATCTCGCCGCGATCCCTTTTCCCCGGCGATGGNCCGCCGNCCCTCCGGTTCTTCTTGCGCCCGCCGCGCGCCGTCTGNTTCGGGATCTCCCCGGGCCGGCTTGTCCACCCTTAACCGGCCGCTTCNTCCCGCCCCGCCGGGGGTGGCGCCCTTCGCGCGCCCGATCGNCGGCGGCGGCCGTCTNAGGTGGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGGATCCAAAGCTACGGATGATAANGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGANGCATGTGAA] [+] EMBL AU173973 [CGCCTCCATCTCGCCGCGATCCCTTTTCCCCGGCGATGGNCCGCCGNCCCTCCGGTTCTTCTTGCGCCCGCCGCGCGCCGTCTGNTTCGGGATCTCCCCGGGCCGGCTTGTCCACCCTTAACCGGCCGCTTCNTCCCGCCCCGCCGGGGGTGGCGCCCTTCGCGCGCCCGATCGNCGGCGGCGGCCGTCTNAGGTGGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGGATCCAAAGCTACGGATGATAANGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGANGCATGTGAA] consensusID : consensus_14422#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTTTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCTTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAGATTCCTTGCAAAAAAAAAAAA] [+] EMBL AU173974 [GGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTTTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCTTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAGATTCCTTGCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14422#1 ----------------------------TCCGTCGCCTCCATCTCGCCGCGATCCCTCT- 31 consensus_14422#3 ---------------------------------CGCCTCCATCTCGCCGCGATCCCTTTT 27 consensus_14422#0 CCACGAAACCTCGCCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCT- 59 consensus_14422#2 ------------------------------------------------GTGCATGTGTAG 12 consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 CCCCGGCGATGGCC-GCCGCCCTCC---GCTCCTCCTGCGCC-GCCGCGCGCCGTCTGCT 86 consensus_14422#3 CCCCGGCGATGGNCCGCCGNCCCTCC-GGTTCTTCTTGCGCCCGCCGCGCGCCGTCTGNT 86 consensus_14422#0 CCCCGGCGATGGCC-GCCGCCCTCC---GCTCCTCCTGCGCC-GCCGCGCGCCGTCTGCT 114 consensus_14422#2 GTCCGATGGGGAAAGATCACCCTGATTGGCACCTCAGGCATC-TCAGGATCCTATGTCGA 71 consensus_14422#4 ---------GGAAAGATCACCCTGATTGGCACCTCAGGCATC-TCAGGATCCTATGTCGA 50 * * ** * * ** ** * * * * * * consensus_14422#1 CCGG-ATCTCCCCGG-CCGCGCTGTCCACCCTCACC--GCCGCCTCCTCCCGCCCCGCCG 142 consensus_14422#3 TCGGGATCTCCCCGGGCCGGCTTGTCCACCCTTAACCGGCCGCTTCNTCCCGCCCCGCCG 146 consensus_14422#0 CCGG-ATCTCCCCGG-CCGCGCTGTCCACCCTCACC--GCCGCCTCCTCCCGCCCCGCCG 170 consensus_14422#2 GCTA-AGGGCATGAGGAAAGTCTGCAGATCATAACCATG-CAGAACATCGTTTTCTGAGG 129 consensus_14422#4 GCTA-AGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTTTGAGG 109 * * * * ** * * * * * * * * ** * * consensus_14422#1 CGG-TGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCG-CCGTCTCAGGTGG-CAACAATG 199 consensus_14422#3 GGGGTGGCGCCCTTCGCGCGCCCGATCGNCGGCGGCGGCCGTCTNAGGTGGGCAACAATG 206 consensus_14422#0 CGG-TGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCG-CCGTCTCAGGTGG-CAACAATG 227 consensus_14422#2 GAA-GGATGCATATCA-GAACAAGGTGTTCCGTTTCT-CGTTTTCTTATTA-CTGTGTAG 185 consensus_14422#4 GAA-GGATGCATATCA-GAACAAGGTGTTCCGTTTCT-C-TTTTCTTCTTA-CTGTGTAG 164 * ** ** * * * * * * * * * * * * consensus_14422#1 CCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATAT 259 consensus_14422#3 CCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATAT 266 consensus_14422#0 CCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATAT 287 consensus_14422#2 CTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTTCAGTG- 244 consensus_14422#4 CTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATT-CAGTG- 222 * * * *** * * * * * * ** * * * * * consensus_14422#1 CTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTC 319 consensus_14422#3 CTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTC 326 consensus_14422#0 CTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTC 347 consensus_14422#2 -TGCTCCAGACCTTCCTGCTGTAAT-AAGAACGTGTTTCTGG--GGTTCACGTCGATTTG 300 consensus_14422#4 -TGCTCCAGACCTTCCTGCTGTAAT-AAGAACGTGTTTCTGG--GGTTCACGTCGATTTG 278 ** ***** ** *** * *** * ** * * * * * ** ** consensus_14422#1 CAGAATCTCTTGGAATTGAAGCCAAGAAAGCTGCATCCAAAGCTACGGATGATAAGG-CT 378 consensus_14422#3 CAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGGATCCAAAGCTACGGATGATAANGGCT 386 consensus_14422#0 CAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGG-CT 406 consensus_14422#2 TTTTTGCTCCAGTCATGGTGGTGCGTGAAGC---ATGTAGA--TTCAGTTGATTCCTTGC 355 consensus_14422#4 TTTTTGCTCCAGTCATGGTGGTGCGTGAAGC---ATGTAGA--TTCAGTTGATTCCTTGC 333 *** * ** * * **** ** * * * * * **** consensus_14422#1 TGGAAAGAAGCTTTGCTTAATGGATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGGTGA 438 consensus_14422#3 GGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGANGCATGTGAA------------ 434 consensus_14422#0 GGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGA 466 consensus_14422#2 ATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGT 415 consensus_14422#4 ATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGT 393 ** * *** * * * ** * * * * * * consensus_14422#1 GGTCTAGTCACCCTAAGAATGGCTCTAGATGACTTTGGGG--ATTACTGGTGAGAATGTG 496 consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 GTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTG 526 consensus_14422#2 AGCTTAATCGGTGTTCA-ATTCCTTGCATGAGCCCTGATATGAGCTCTATTGAGTACTTC 474 consensus_14422#4 AGCTTAATCGGTGTTCAGATTCCTTGCAAAAAAAAAAAA--------------------- 432 consensus_14422#1 GGCCCTTGGCTGG--TATATAGAAGAGCTCGT--AATCTG-GTATAGCGGTCATG---AA 548 consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 GGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAA 586 consensus_14422#2 CTTCATTTTATAATGTAAGACTTTCTTATATTAAAAAAAAAAAAAANNAAANAAAAAAAA 534 consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 TATCTGGA-TCATTTGGCT----GAGGAAATTTCTCGGAGAAGTGGTAATGAGTGGGGCT 603 consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 TATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTG 646 consensus_14422#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANAAAAAAA--------- 585 consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 TAATGTACCCTGAAAGCCGGCAGGGGAAGGTCCAAGGGAAGAGCCCCTGTGCCCTAGGCT 663 consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 GGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAG 706 consensus_14422#2 ------------------------------------------------------------ consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 NTAGATCTTGCGCTTAGGTTGAGAGTTGCAACTACATGTGACATATTTTGGGA------- 716 consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 ATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGA 766 consensus_14422#2 ------------------------------------------------------------ consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 ------------------------------------------------------------ consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 AAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGA 826 consensus_14422#2 ------------------------------------------------------------ consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 ------------------------------------------------------------ consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 ACAAGGTGTTCCGTTTCTCTTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAG 886 consensus_14422#2 ------------------------------------------------------------ consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 ------------------------------------------------------------ consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 ATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAAT 946 consensus_14422#2 ------------------------------------------------------------ consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 ------------------------------------------------------------ consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 AAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGA 1006 consensus_14422#2 ------------------------------------------------------------ consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 ------------------------------------------------------------ consensus_14422#3 ------------------------------------------------------------ consensus_14422#0 AGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACT 1066 consensus_14422#2 ------------------------------------------------------------ consensus_14422#4 ------------------------------------------------------------ consensus_14422#1 -------------------------------------------------------- consensus_14422#3 -------------------------------------------------------- consensus_14422#0 CTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAAAAAAAAAAGA 1122 consensus_14422#2 -------------------------------------------------------- consensus_14422#4 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||