These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1636 fasta sequence [AAATCGGCAAAATCGCCACCGCACACAGGAGAGGACACAGCGACGAAAGCAGCGAAGTCGGCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCGGCGCGCGACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGTGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCGTCCG-GGCAGCTGC-GGCGCA-TCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCGCTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTCGACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG-CCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC-AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTG-CTGATAACCCTT-CGACACTGT-ATGG-TCACCCAGATTGTCTGCGAG-CCTGAAGACCT-C--AACTGATCAT-CCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTA-CCCTG-AATTTTGTGTATATATATGACGTGTTAGTCACT-CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGC--AAAAGTATGATGGTTTCGGATTTTTAAAAAAAAAAAAAAA] [+] EMBL AK067953 [AAATCGGCAAAATCGCCACCGCACACAGGAGAGGACACAGCGACGAAAGCAGCGAAGTCGGCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCGGCGCGCGACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGTGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCGTCCG GGCAGCTGC GGCGCA TCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCGCTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTCGACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG CCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTG CTGATAACCCTT CGACACTGT ATGG TCACCCAGATTGTCTGCGAG CCTGAAGACCT C AACTGATCAT CCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTA CCCTG AATTTCGTGTATATATATGACGTGTTAGTCACT CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGC AAAAGTATGATGGT ] [+] EMBL CB644793 [ ACACCGGAGAGGACACAGCGACGAAAGCAGCGAAGTCGGCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCGGCGCGCGACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGTGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCGTCCG GGCAGCTGC GGCGCA TCGCCTCCGCGCCTGCGGCCGCCATACCCGACCTCCGCTCGCTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTCGACTCGACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATAC ] [+] EMBL CB676657 [ ACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGAGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGACAAGTACCTCGCCGCGTCCGAGGCAGCTGCAGGCGCAGTCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCGCTCCTCACGGAGTACGGCGGCGGCGGCGGCCACGGAGACCAGCCGATCCTCGCGGTGGTGCGGGGGCACGTCCGCACCGCCCCCCAAGGCAAGTACC ] [-] EMBL AU093806 [ CTCCGCTCGCTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATNCTCTCNTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTNCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTAC ] [+] EMBL CA305761 [ CCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTCGACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG TCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCCAAAAAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGC ] [+] EMBL C74909 [ GACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG CCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACC ] [+] EMBL CA757079 [ GAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG CCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCACAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTG CTGATAACCCTT CGACACTGT ATGG TCACCCAGATTGTCTGCGAG CCTGAAGACCT N CACTGATCAT CCTGCGTGCACTAGTCTAAGCTACTTGGCTAACANAACTATGTTA CCCTG AATTTTGTGTATATATATGACGTGTTA ] [-] EMBL CB644794 [ AAGCCCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTG CTGATAACCCTT CGACACTGT ATGG TCACCCAGATTGTCTGCGAG CCTGAAGACCT C AACTGATCAT CCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTA CCCTG AATTTTGTGTATATATATGACGTGTTAGTCACT CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTAAGGCTAGC AAAAGTATGATGGT ] [+] EMBL AU033237 [ TCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGG ACGTCAGTNCG ] [+] EMBL D43613 [ GACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCNTGTCTNCTGCTGCAAATGTGNACTGNTTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGNTACATGATAAGGATCTACGACAATTGAGTCTTCTTGA ] [+] EMBL AU033238 [ GTTTTGCCTNAAAACCCTTACGACACTNTAATGG TCACCCAGATTNTCTGCTAGCCCTGAAGACCTAC AACTGATCAT CCTGCGTGCACTAGNCTAAGCTACTTGGCTAANAAAACTATGTTA CCCTG AATTTTGTGTATATATATGACGTGTTAGTCACT CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTNTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAG TGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGC AAAAGTATGATGG TTCGGATTTTTAAAAAAAAAAAAAAA] [+] EMBL D42764 [ ccgaaaacCTNT ATGGNCCACCCANATTGTCTTCGAN CCTGAAGACCT CNAAACTGATCATCCCTGCGTGCACTAGCCTAAGCTACTTGGCTAACAAAACTATGTTACCCCTGAAATTTTGTGTATATATATGNCGTGTTAGTCACTCCCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGA NTGACGCCTANAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCNTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGC ] [+] EMBL AU225204 [ gcc gctCCCAGATTGTCTGCGAG CCTGAAGACCT C AACTGATCAT CCTGCGTGCACTANTCTAAGCTACTTGGCTAACAAAACTATGTTA CCCTG AATTTTGTGTATATATATGACGTGTTAGTCACT CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATATAATCCTGTAGCTANCCAAACTGCCANAGTCNTGAGCTGACNCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGCCAAAAACTATGATGGGTTCGGATTTTTtgaccgg ] consensusID : consensus_14471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [TTCGGCCGANCCGATTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGANCTGGAAGAAGATCAAAGANCGGANGGAGGCAAGGCAAGCCCAAGANGTATTTCGACAAACTACTGATGAAGTTACAGATGATCAGTCTAGCGATGAANANGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCANATTGTCTGCGAGCCTGAANACCTCAACTGATCATCCTGCGTGCACTANTCTAANCTACTTGGCTAACAAAACTATGTTNCCCTNAATTTNGTGTNTATNTNTNACGTGTTANTCCCTCCCCANNAANAACTCNTNTNGGGCNNANATCNCCCGGNATNCTTTNCNTNNTCCCCATNNAAANCCTNTTNCTNNCCNNNCTGCCCNNAANTCCTTNAA] [+] EMBL AA752823 [TTCGGCCGANCCGATTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGANCTGGAAGAAGATCAAAGANCGGANGGAGGCAAGGCAAGCCCAAGANGTATTTCGACAAACTACTGATGAAGTTACAGATGATCAGTCTAGCGATGAANANGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCANATTGTCTGCGAGCCTGAANACCTCAACTGATCATCCTGCGTGCACTANTCTAANCTACTTGGCTAACAAAACTATGTTNCCCTNAATTTNGTGTNTATNTNTNACGTGTTANTCCCTCCCCANNAANAACTCNTNTNGGGCNNANATCNCCCGGNATNCTTTNCNTNNTCCCCATNNAAANCCTNTTNCTNNCCNNNCTGCCCNNAANTCCTTNAA] consensusID : consensus_14471#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [AGGGTGGTGGAAATGGGAGGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGGTGGTGCAAATGGGCACTGATTGTGGAACGTCAGTTTGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACAGGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCAACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTACCCGGAATTTTGTGTATATATATGACGTGTTAGTCACTCCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGAAGGGCCGCT] [-] EMBL CB676658 [AGGGTGGTGGAAATGGGAGGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGGTGGTGCAAATGGGCACTGATTGTGGAACGTCAGTTTGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACAGGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCAACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTACCCGGAATTTTGTGTATATATATGACGTGTTAGTCACTCCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGAAGGGCCGCT] consensusID : consensus_14471#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [GTTTCANACGATCAGTCTAGCGATGAANAGGCTGGTGAAATGGGANACGGGGCAACTATGTGTTANATGCTTAAGGAAAAGAAGGAAGGCNAGCTTTTAATCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACNACAANTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCAACTGANCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTNACAAAACTATGTTACCCTGAANTTTGTGTATATATATGACGTGTTAGTCACTCCCGGGGGAAAAAAAAAAAAAAA] [+] EMBL C98647 [GTTTCANACGATCAGTCTAGCGATGAANAGGCTGGTGAAATGGGANACGGGGCAACTATGTGTTANATGCTTAAGGAAAAGAAGGAAGGCNAGCTTTTAATCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACNACAANTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCAACTGANCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTNACAAAACTATGTTACCCTGAANTTTGTGTATATATATGACGTGTTAGTCACTCCCGGGGGAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 AAATCGGCAAAATCGCCACCGCACACAGGAGAGGACACAGCGACGAAAGCAGCGAAGTCG 60 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 GCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCGGCGCGC 120 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 GACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGTGCTC 180 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 GGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCGTCCGGG 240 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 CAGCTGCGGCGCATCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCGCTCCTC 300 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 GCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGC 360 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 CACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGC 420 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 GTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGG 480 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 ACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTT 540 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 AGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAG 600 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 TTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTC 660 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 GACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTG 720 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 TTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGA 780 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 CCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGAC 840 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 -------------TTCGGCCGANCCGATTGTCTTCTCGTGCTAAAACACTCTTTTGGGCT 47 consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 CTTACCAAGGATGAGATGGAAGCCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCT 900 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 AGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGANCTGG 107 consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 AGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGG 960 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 AAGAAGATCAAAGANCGGANGGAGGCAAGGCAAGCCCAAGANGTATTTCGACAAACTACT 167 consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 AAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCCAAGAGGTATTTCGACAAACTACT 1020 consensus_14471#2 ------------------------------------------------------------ consensus_14471#1 GATGAAGTTACAGATGATCAGTCTAGCGATGAANANGCTGGTG-AAATGGGAGACGGG-C 225 consensus_14471#3 ------GTTTCANACGATCAGTCTAGCGATGAANAGGCTGGTG-AAATGGGANACGGGGC 53 consensus_14471#0 GATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTG-AAATGGGAG-ACGGGC 1078 consensus_14471#2 ----------------------------------AGGGTGGTGGAAATGGGAGGACGGGC 26 * * ***** ******** ** * consensus_14471#1 AACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCA-GCTTTTATTCCTTGTGGTCAC 284 consensus_14471#3 AACTATGTGTTANATGCTTAAGGAAAAGAAGGAAGGCNAGCTTTTAATCCTTGTGGTCAC 113 consensus_14471#0 AACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCA-GCTTTTATTCCTTGTGGTCAC 1137 consensus_14471#2 AACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCA-GCTTTTATTCCTTGTGGTCAC 85 ************ ************************ ******* ************* consensus_14471#1 CTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCT 344 consensus_14471#3 CTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCT 173 consensus_14471#0 CTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCT 1197 consensus_14471#2 CTTGTCTGGTGGTGCAAATGGGCACTGATTGTGGAACGTCAGTTTGACCCATTGTGCCCT 145 ******** ** ******** *********************** *************** consensus_14471#1 ATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATG 404 consensus_14471#3 ATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACNACAANTGAGGCTTCTTGATG 233 consensus_14471#0 ATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATG 1257 consensus_14471#2 ATGTGTCGGCAAGACATCCGATACAGGATAAGGATCTACGACAATTGAGGCTTCTTGATG 205 ************************* ************* **** *************** consensus_14471#1 TTTTGCTGATAACCCTTCGACACTGTATGGTCACCCANATTGTCTGCGAGCCTGAANACC 464 consensus_14471#3 TTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACC 293 consensus_14471#0 TTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACC 1317 consensus_14471#2 TTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACC 265 ************************************* ****************** *** consensus_14471#1 TCAACTGATCATCCTGCGTGCACTANTCTAANCTACTTGGCTAACAAAACTATGTTNCCC 524 consensus_14471#3 TCAACTGANCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTNACAAAACTATGTTACCC 353 consensus_14471#0 TCAACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTACCC 1377 consensus_14471#2 TCAACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTACCC 325 ******** **************** ***** ********** ************* *** consensus_14471#1 TNAATTTNGTGTNTATNTNTNACGTGTTANTCCCTCCCCANNAANAACTCNTNTNGGGCN 584 consensus_14471#3 TGAANTTTGTGTATATATATGACGTGTTAGTCACTCCCGGGGGAAAAAAAAAAAAAAA-- 411 consensus_14471#0 TGAATTTTGTGTATATATATGACGTGTTAGTCACTCCC--AGGAGAACTCATATGGG-CA 1434 consensus_14471#2 GGAATTTTGTGTATATATATGACGTGTTAGTCACTCCC--AGGAGAACTCATATGGG-CA 382 ** ** **** *** * * ******** ** ***** * ** consensus_14471#1 NANATCNCCCGGNATNCTTTNCNTNNTCCCCATNNAAANCCTNTTNCTNNCCNNNCTGCC 644 consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 GAGATCACC--GGATACTTTTCATAGTCGC--ATAGAATCCTGTAGCTAGCCAAACTGCC 1490 consensus_14471#2 GAGATCACC--GGATACTTTTCATAGTCGC--ATAGAATCCTGTAGCTAGCCAAACTGCC 438 consensus_14471#1 CNNAANTCCTTNAA---------------------------------------------- 658 consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 AGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCT 1550 consensus_14471#2 AGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCT 498 consensus_14471#1 ------------------------------------------------------------ consensus_14471#3 ------------------------------------------------------------ consensus_14471#0 CCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGCAAAAGTATGATGGT 1610 consensus_14471#2 CCCTTCTCATGTCTGTGCATTCTGTAAAGATGAAGG-GCCGCT----------------- 540 consensus_14471#1 -------------------------- consensus_14471#3 -------------------------- consensus_14471#0 TTCGGATTTTTAAAAAAAAAAAAAAA 1636 consensus_14471#2 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||