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Oryza sativa
cluster # 14558 cluster # 14558       Sequences # 17       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14558#0 length = 694 sequences # 11  
consensus_14558#1 length = 684 sequences # 4  
consensus_14558#2 length = 567 sequences # 1  
consensus_14558#3 length = 180 sequences # 1  

consensusID : consensus_14558#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 694
fasta sequence
                              [GCCCGAACCCGAGCCCAAAGCGACCGATCCAACCACCCGCATCCACACACCGCACCACCAACCATCGACCGCCTCGCCGGAGAGGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCG-GAGATG-TCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCACCGCCAAGCTCTCCTGATCCC-CGCTCCGCTTCGATCTGCTCTATTCA-GGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAA-CTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATC-TTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCTTAAAGTTTTGAATGCAAAAAAAAAAAAAAA]

[+] EMBL AK059624             [GCCCGAACCCGAGCCCAAAGCGACCGATCCAACCACCCGCATCCACACACCGCACCACCAACCATCGACCGCCTCGCCGGAGAGGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCG GAGATG TCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCACCGCCAAGCTCTCCTGATCCC CGCTCCGCTTCGATCTGCTCTATTCA GGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAA CTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATC TTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCT                              ]
[+] EMBL AU068986             [                                        ATCCACACACCGCACCACCAACCATCGACCGCCTCGCCGGAGAGGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCG GAGATG TCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATNCGCGAGGCGCAGGAGGCC                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU078175             [                                          CCACACACCGCACCACCAACCATCGACCGCTTCGCCGGAGAGGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCG GAGATG TCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCACCGCCAAGCTCTCCTGATCCCNCG TCCGCTTCGATCTGCTCTATTCA GGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAA CTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATC TTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAAaaaaaa                                         ]
[+] EMBL OSC23381             [                                                        ACCAACCATCGACCGCCTCGCCGGAGAGGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCG GAGATG TCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGNCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGNCGNCACCATTGGCGTCCCCCTCATNCCTTCCAACGGCAAGTTNTCCTGATCCC CGGTNCGGTTCGATCTG TNTATTNA GGGNTGGTTATG CAAGAAGGAGGACATTNTG AAGGATCGTGG TG TAG TNTATG ACCAAA AT TGTTT AA TTAG ATAA                                                                                                                                              ]
[-] EMBL CA753784             [                                                         CCAACCATCGACCGCCTCGCCGGAGAGGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCG GAGATG TCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCACCGCCAAGCTCTCCTGATCCC CGCTCCGCTTCGATCTGCTCTATTCA GGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAA CTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATC TTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCTTAAAGTTTTGAATGCAAAAAAAAAAAAAAA]
[+] EMBL AU173858             [                                                                   ACCGCCTCGCCGGAGAGGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCG GAGATG TCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCACCGCCAAGCTCTCCTGATCCC CGCTCCGCTTCGATCTGCTCTATTCA GGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGAT                                                                                                                                                                                              ]
[+] EMBL AU161812             [                                                                         TCGCCGGAGAGGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCAACCCAGGCG GAGATG TCGGAGGCGCGCCTCCCACTGCCCTACCGNGACCAGTGNGCCCACCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF334191             [                                                                                   GGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCGNGAGATGTTCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCACCGCCAAGCTCTCCTGATCCC CGCTCCGCTTCGATCTGCTCTATTCAGGGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAACCTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATAC                                                   ]
[+] EMBL AU070462             [                                                                                                        GAGATGGAGGCGGCGGCGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCG GAGATG TCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAAGCGCAGGAGGCCAAGTCCAAGGGCGCCGGCACCATTTGCGT                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU198172             [                                                                                                                                                                                                                                                                GCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCACCGCCAAGCTCTCCTGATCCC CGCTCCGCTTCGATCTGCTCTATTCA GGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAA CTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATC TTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCTTAAAGTTTTGAATGCAAAAA          ]
[-] EMBL CB964972             [                                                                                                                                                                                                                                                                                                                                         TGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCCCCGCCAAGCTCTCCTGATCCC CGCTCCGCTTCGATCTGCTCTATTCA GGGCTGGTTATGACAGCACGAAGGACCTTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCCAGCATCTGTTTGAATTTAGCATAAAGTTAA CTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATC TTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCCATGACTGAAATGACGCCTTAAAGTTTTGAATGCAtagcgtg       ]


>consensus_14558#0 GCCCGAACCCGAGCCCAAAGCGACCGATCCAACCACCCGCATCCACACACCGCACCACCA ACCATCGACCGCCTCGCCGGAGAGGAGAGAGAAAGGAAGAGCGCGAGATGGAGGCGGCGG CGGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACCCAGGCGGAGATGT CGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCCTCATCCCCCTCA ACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCT ACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCG AGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTCATCCCTTCCA CCGCCAAGCTCTCCTGATCCCCGCTCCGCTTCGATCTGCTCTATTCAGGGCTGGTTATGA CAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTT TGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGC ATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGAC GCCTTAAAGTTTTGAATGCAAAAAAAAAAAAAAA



consensusID : consensus_14558#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 684
fasta sequence
                              [CGCCGGAGAGGAGAGAGAAAAGGAAGNCCGCGAGATGGAGCCGGCCGCCGNCGGCCGGCTTGCAGCTGGGCACTTCGAAGCCGCAGATCGCGACCCAGGCGGAGATGTCGGAGGCGCGCNTCCCACTGCCTTACCGCGACCAGTGCGCCCACNTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACG-CCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCC-CTTCAT-CCTTCCACCGCCAAGCTCTCCTGATC-CNCCCTCCGCTTCGATCTGCTCTATTCAGGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCTTAAAGTTTTGAATGCAATGCGTGGANTCTGCAAAAAAAGATTTACTTTAATTCAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGGTACG]

[+] EMBL AU071226             [CGCCGGAGAGGAGAGAGAAAAGGAAGNCCGCGAGATGGAGCCGGCCGCCGNCGGCCGGCTTGCAGCTGGGCACTTCGAAGCCGCAGATCGCGACCCAGGCGGAGATGTCGGAGGCGCGCNTCCCACTGCCTTACCGCGACCAGTGCGCCCACNTCCTCATCCCCCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACG CCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCC C TCATCCCTTCCACCGCCAAGCTCTCCTGATC CNTCCTCCGCTTCGATCTGCTCTATTCAGGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCTTAAAGTTTTGAATGCAATGCGTGGANTCTGCAAAAA                                                        ]
[-] EMBL CF334192             [                                                                                                                                                                           AGTGCCGCGTCGCCGAGTACTACCTCCCCCTGAAGTGCGAGCCCGAGCGCCACGCCCTACGAGAAGTGCCAGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGGCCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCC CTTCAT CCTTCCACCGCCAAGCTCTCCTGATC CCCGCTCCGCTTCGATCTGCTCTATTCAGGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCTTAAAGTTTTGAATGCAATGCGTGGACTCTGCATAGGAAGATTTACTTTAATTCAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGGTACG]
[+] EMBL D42889               [                                                                                                                                                                                                                                                                                                     cCAGGAGG CAAGTCCAAGGGCGCCGCCACCATTGGCGCCCCCGCATC C CCTTCCACCGCCAAGCTCTCCTGATCACTCCCTCCGCTTCGATCTGCTCTANTCAGGGCTGGTTATGACAGCACGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCTTAAAGTTTTGAATGCAATGCG                                                                       ]
[+] EMBL AU071267             [                                                                                                                                                                                                                                                                                                                                                                                                GATCTGCTCTATTCAGGGCTGGTTATGACAGCNCGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTNTTTATACTNAATGACTGNNATGNCGCNTTAAAGTTTTGNATGCNNTGNGTGNNTTNTGTAAAt                                                         ]


>consensus_14558#1 CGCCGGAGAGGAGAGAGAAAAGGAAGNCCGCGAGATGGAGCCGGCCGCCGNCGGCCGGCT TGCAGCTGGGCACTTCGAAGCCGCAGATCGCGACCCAGGCGGAGATGTCGGAGGCGCGCN TCCCACTGCCTTACCGCGACCAGTGCGCCCACNTCCTCATCCCCCTCAACAAGTGCCGCG TCGCCGAGTACTACCTCCCCTGGAAGTGCGAGCCCGAGCGCCACGCCTACGAGAAGTGCC AGTACGAGCTCGTCATGGAGCGGATGATCCAGATGCAGAAGATCCGCGAGGCGCAGGAGG CCAAGTCCAAGGGCGCCGCCACCATTGGCGTCCCCCTTCATCCTTCCACCGCCAAGCTCT CCTGATCCNCCCTCCGCTTCGATCTGCTCTATTCAGGGCTGGTTATGACAGCACGAAGGA CATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGAATTTAGCAT AAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTT CAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCTTAAAGTTT TGAATGCAATGCGTGGANTCTGCAAAAAAAGATTTACTTTAATTCAAAAAAAAAAAAAAA AAAAAACACTGTCATGCCGGTACG



consensusID : consensus_14558#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence
                              [CAGGCGGGAGATGTTCTGGAGTGCAGCTGCATTCCCACACCTTGCCCTCTTACCCGGCGACCCAATAGTGGCTGCCNCAACCCTCCTCAGTCCCCCACGTCAACAAGTTCCGCGTCGTCCGNAGNTATCTACCTTCACCCTGGAGGTGCGAGCCGAGTCTGTCCAACGCACTACGAGAAGTGCCAGTACGAGCCTCNGGTCAGTGGATGATGGATCCAAGATGCATGAAGATGCACAGCGAGGGCNGGCAGGGAGGCCAAGTGCCAAGGGCGCCAGCCAACACAATGTGGCGTGCCCCACTGCATCCCTTGCCACCAGGCCAAAGCTCTGCCTGATGCACACACGCTGCCGCTTCGATGCTGGCTCTATTGCAGGNCTGGGTTATGGACAAGCAACCGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGTNATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCAGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCATAAAATAA]

[+] EMBL BI806233             [CAGGCGGGAGATGTTCTGGAGTGCAGCTGCATTCCCACACCTTGCCCTCTTACCCGGCGACCCAATAGTGGCTGCCNCAACCCTCCTCAGTCCCCCACGTCAACAAGTTCCGCGTCGTCCGNAGNTATCTACCTTCACCCTGGAGGTGCGAGCCGAGTCTGTCCAACGCACTACGAGAAGTGCCAGTACGAGCCTCNGGTCAGTGGATGATGGATCCAAGATGCATGAAGATGCACAGCGAGGGCNGGCAGGGAGGCCAAGTGCCAAGGGCGCCAGCCAACACAATGTGGCGTGCCCCACTGCATCCCTTGCCACCAGGCCAAAGCTCTGCCTGATGCACACACGCTGCCGCTTCGATGCTGGCTCTATTGCAGGNCTGGGTTATGGACAAGCAACCGAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGTNATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCAGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCATAAAATAA]


>consensus_14558#2 CAGGCGGGAGATGTTCTGGAGTGCAGCTGCATTCCCACACCTTGCCCTCTTACCCGGCGA CCCAATAGTGGCTGCCNCAACCCTCCTCAGTCCCCCACGTCAACAAGTTCCGCGTCGTCC GNAGNTATCTACCTTCACCCTGGAGGTGCGAGCCGAGTCTGTCCAACGCACTACGAGAAG TGCCAGTACGAGCCTCNGGTCAGTGGATGATGGATCCAAGATGCATGAAGATGCACAGCG AGGGCNGGCAGGGAGGCCAAGTGCCAAGGGCGCCAGCCAACACAATGTGGCGTGCCCCAC TGCATCCCTTGCCACCAGGCCAAAGCTCTGCCTGATGCACACACGCTGCCGCTTCGATGC TGGCTCTATTGCAGGNCTGGGTTATGGACAAGCAACCGAAGGACATTGTGCAAGGATCGT GGATGCTAGTTCTATGAACCAAACATCTGTTTGTNATTTAGCATAAAGTTAACTGTTGTC TTCTTCTCTCCAGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGG AACTACCTGTTTATACTCATAAAATAA



consensusID : consensus_14558#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence
                              [GCGTCCAGCACCACGCGTCCAGCATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAGCATCTGTTTGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAAAAA]

[+] EMBL BI800866             [GCGTCCAGCACCACGCGTCCAGCATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAGCATCTGTTTGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCCGTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAAAAA]


>consensus_14558#3 GCGTCCAGCACCACGCGTCCAGCATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCA AGCATCTGTTTGAATTTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCGCCTTTACTCC GTTGGTGAGCATCTTCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14558#2      ------------------------------------------------------------
consensus_14558#3      ------------------------------------------------------------
consensus_14558#0      GCCCGAACCCGAGCCCAAAGCGACCGATCCAACCACCCGCATCCACACACCGCACCACCA 60
consensus_14558#1      ------------------------------------------------------------
                                                                                   

consensus_14558#2      ------------------------------------------------------------
consensus_14558#3      ------------------------------------------------------------
consensus_14558#0      ACCATCGACCGCCTCGCCGGAGAGGAGAGAGAAA-GGAAGAGCGCGAGATGGAGGCGGCG 119
consensus_14558#1      --------------CGCCGGAGAGGAGAGAGAAAAGGAAGNCCGCGAGATGGAGCCGGCC 46
                                                                                   

consensus_14558#2      ----------------CAGGCGGGA-----GATGTTCTGGAGTGCAGCTGCATTCCCACA 39
consensus_14558#3      ------------------------------------------------------------
consensus_14558#0      GC-GGCGGCCGGCGTGCAGCTGGGCACCTCGAAGCCGCAGATCGCGACC-CAGGCGGAGA 177
consensus_14558#1      GCCGNCGGCCGGCTTGCAGCTGGGCACTTCGAAGCCGCAGATCGCGACC-CAGGCGGAGA 105
                                                                                   

consensus_14558#2      CCTTGCC--CTCTTACCCGGCGACCCAATAGTGGCTGCCNCAACCCTCCTCAGTCCCCCA 97
consensus_14558#3      ------------------------------------------------------------
consensus_14558#0      TGTCGGAGGCGCGCCTCCCACTGCCCTACCGCGACCAGTGCGCCCACCTCC--TCATCCC 235
consensus_14558#1      TGTCGGAGGCGCGCNTCCCACTGCCTTACCGCGACCAGTGCGCCCACNTCC--TCATCCC 163
                                                                                   

consensus_14558#2      CGTCAACAAGTTCCGCGTCGTCCGNAGNTATCTACCTTCACCCTGGAGGTGCGAGCCGAG 157
consensus_14558#3      ------------------------------------------------------------
consensus_14558#0      CCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCC------CTGGAAGTGCGAGCCCGA 289
consensus_14558#1      CCTCAACAAGTGCCGCGTCGCCGAGTACTACCTCCC------CTGGAAGTGCGAGCCCGA 217
                                                                                   

consensus_14558#2      TCTGTCCAACGCACTACGAGAAGTGCCAGTACGAGCCTCNGGTCAGTGGATGATGGATCC 217
consensus_14558#3      ------------------------------------------------------------
consensus_14558#0      ---GCGCCACGC-CTACGAGAAGTGCCAGTACGAGCTC---GTCATGGAGCGGATGATCC 342
consensus_14558#1      ---GCGCCACGC-CTACGAGAAGTGCCAGTACGAGCTC---GTCATGGAGCGGATGATCC 270
                                                                                   

consensus_14558#2      AAGATGCATGAAGATGCACAGCGAGGGCNGGCAGGGAGGCCAAGTGCCAAGGGCGCCAGC 277
consensus_14558#3      ------------------------------------------------------------
consensus_14558#0      A-GATGCA-GAAGATCC---GCGAGGCGCA----GGAGGCCAAGT-CCAAGGGCGCC-GC 391
consensus_14558#1      A-GATGCA-GAAGATCC---GCGAGGCGCA----GGAGGCCAAGT-CCAAGGGCGCC-GC 319
                                                                                   

consensus_14558#2      CAACACAATGTGGCGTGCCCCACTGCATCCCTTGCCACCAGGCCAAAGCTCTGCCTGATG 337
consensus_14558#3      ------------------------------------------------------------
consensus_14558#0      CACCAT----TGGCGT--CCCCCTCATCCCTT--CCACCG---CCAAGCTCT-CCTGATC 439
consensus_14558#1      CACCAT----TGGCGT--CCCCCTTCATCCTT--CCACCG---CCAAGCTCT-CCTGATC 367
                                                                                   

consensus_14558#2      CACACACGCTGCCGCTTCGATGCTGGCTCTATTGCAGGNCTGGGTTATGGACAAGCAACC 397
consensus_14558#3      --------------------------------------------GCGTCCAGCACCACGC 16
consensus_14558#0      CCCGCTC-----CGCTTCGATCT--GCTCTATT-CAGGGCTGG-TTATGA--CAGCA--C 486
consensus_14558#1      CNCCCTC-----CGCTTCGATCT--GCTCTATT-CAGGGCTGG-TTATGA--CAGCA--C 414
                                                                      *     * **  *

consensus_14558#2      GAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTGTNAT 457
consensus_14558#3      GTCCAGCATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAGCATCTGTTTG-AAT 75
consensus_14558#0      GAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTG-AAT 545
consensus_14558#1      GAAGGACATTGTGCAAGGATCGTGGATGCTAGTTCTATGAACCAAACATCTGTTTG-AAT 473
                       *     *************************************** **********  **

consensus_14558#2      TTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCCAGCCTTTACTCCGTTGGTGAGCATCT 517
consensus_14558#3      TTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCC-GCCTTTACTCCGTTGGTGAGCATCT 134
consensus_14558#0      TTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCC-GCCTTTACTCCGTTGGTGAGCATCT 604
consensus_14558#1      TTAGCATAAAGTTAACTGTTGTCTTCTTCTCTCC-GCCTTTACTCCGTTGGTGAGCATCT 532
                       ********************************** *************************

consensus_14558#2      TCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCATAAAATAA---------- 567
consensus_14558#3      TCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAAAAA-------------- 180
consensus_14558#0      TCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCT 664
consensus_14558#1      TCGAGTTTCAATATGAAATAAGGAACTACCTGTTTATACTCAATGACTGAAATGACGCCT 592
                       ******************************************   *              

consensus_14558#2      ------------------------------------------------------------
consensus_14558#3      ------------------------------------------------------------
consensus_14558#0      TAAAGTTTTGAATGCAA-----AAAA-----AAAAAAAAA-------------------- 694
consensus_14558#1      TAAAGTTTTGAATGCAATGCGTGGANTCTGCAAAAAAAGATTTACTTTAATTCAAAAAAA 652
                                                                                   

consensus_14558#2      --------------------------------
consensus_14558#3      --------------------------------
consensus_14558#0      --------------------------------
consensus_14558#1      AAAAAAAAAAAAAACACTGTCATGCCGGTACG 684
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)