These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 987 fasta sequence [GAGTAGAAAAAGCAGATCATCACCTCTCCACCCGTTTCTTTCTCGGCCCATCCAACACGCGCTCTTGCTTGAACGCGCAAAGAGAAACACGACGGGCGAGGCGAGCGAGATGAGGTTCTTCCTCAAGCTCGCTCCTCGGTGTTCCGTGCTGCTTCTCCTCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC-TGCGGGATCCTCT-ACAGCGGGTG-CCCCGGCG-AGAGGCCATGCGACGCGCTCGACGCCTGCTGCATGGTGCACGACCACTGCGTCGACACCCACAACGACGACTACCTGAACACGATGTGCAACGAGAACCTGCTGAGCTGCATCGACCGGGTGAGCGGGGCGACGTTCCCGGGGAACAAGTGCAACGTC-GGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAAGATCCTCCACAAGC-GCGACGAC-GGCCAATAGCTAGCCACCACG-TTTCGCACATACACACGCTGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTCGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTACAAAAAAAAAAAAGAAATTATTAAATGGAACATGGTTGGTTATTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF291861 [GAGTAGAAAAAGCAGATCATCACCTCTCCACCCGTTTCTTTCTCGGCCCATCCAACACGCGCTCTTGCTTGAACGCGCAAAGAGAAACACGACGGGCGAGGCGAGCGAGATGAGGTTCTTCCTCAAGCTCGCTCCTCGGTGTTCCGTGCTGCTTCTCCTCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC TGCGGGATCCTCT ACAGCGGGTG CCCCGGCG AGAGGCCATGCGACGCGCTCGACGCCTGCTGCATGGTGCACGACCACTGCGTCGACACCCACAACGACGACTACCTGAACACGATGTGCAACGAGAACCTGCTGAGCTGCATCGACCGGGTGAGCGGGGC ] [+] EMBL AK071135 [ ATCATCACCTCTCCACCCGTTTCTTTCTCGGCCCATCCAACACGCGCTCTTGCTTGAACGCGCAAAGAGAAACACGACGGGCGAGGCGAGCGAGATGAGGTTCTTCCTCAAGCTCGCTCCTCGGTGTTCCGTGCTGCTTCTCCTCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC TGCGGGATCCTCT ACAGCGGGTG CCCCGGCG AGAGGCCATGCGACGCGCTCGACGCCTGCTGCATGGTGCACGACCACTGCGTCGACACCCACAACGACGACTACCTGAACACGATGTGCAACGAGAACCTGCTGAGCTGCATCGACCGGGTGAGCGGGGCGACGTTCCCGGGGAACAAGTGCAACGTC GGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAAGATCCTCCACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTCGCACATACACACGCTGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTCGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTACAAAAAAAAAAAAGAAATTATTAAATGGAACATGGTTGG ] [+] EMBL CF334711 [ ACCTCTCCACCCGTTTCTTTCTCGGCCCATCCAACACGCGCTCTTGCTTGAACGCGCAAAGAGAAACACGACGGGCGAGGCGAGCGAGATGAGGTTCTTCCTCAAGCTCGCTCCTCGGTGTTCCGTGCTGCTTCTCCTCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC TGCGGGATCCTCT ACAGCGGGTG CCCCGGCG AGAGGCCATGCGACGCGCTCGACGCCTGCTGCATGGTG ] [+] EMBL CB684648 [ CCACCCTTTTCTTTCTCGGCCCATCCAACACGCGCTCTTGCTTGAACGCGCAAAGAGAAACACGACGGGCGAGGCGAGCGAGATGAGGTTCTTCCTCAAGCTCGCTCCTCGGTGTTCCGTGCTGCTTCTCCTCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC TGCGGGATCCTCT ACAGCGGGTG CCCCGGCG AGAGGCCATGCGACGCGCTCGACGCCTGCTGCATGGTGCACGACCACTGCGTCGACACCCACAACGACGACTACCTGAACACGATGTGCAACGAGAACCTGCTGAGCTGCATCGACCGGGTGAGCGGGGCGACGTTCCCGGGGAACAAGTGCAACGTC GGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAAGATCCTCCACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTCGCACATACACACGCTGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTCGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGC ] [+] EMBL OSA238117 [ ACCCGTTTCTTTCTCGGCCCATCCAACACGCGCTCTTGCTTGAACGCGCAAAGAGAAACACGACGGGCGAGGCGAGCGAGATGAGGTTCTTCCTCAAGCTCGCTCCTCGGTGTTCCGTGCTGCTTCTCCTCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC TGCGGGATCCTCT ACAGCGGGTG CCCCGGCG AGAGGCCATGCGACGCGCTCGACGCCTGCTGCATGGTGCACGACCACTGCGTCGACACCCACAACGACGACTACCTGAACACGATGTGCAACGAGAACCTGCTGAGCTGCATCGACCGGGTGAGCGGGGCGACGTTCCCGGGGAACAAGTGCAACGTC GGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAAGATCCTCCACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTCGCACATACACACGCTGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTTGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTACAAAAAAAAAAAAGAAATTATTAAATGGAACATGG ] [+] EMBL OSS13276A [ ACCCGTTTCTTTCTCGGCCCATCCAACACGCGCTCTTGCTTGAACGCGCAAAGAGAAACACGACGGGCGAGGCGAGCGAGATGAGGTTCTTCCTCAAGCTCGCTCCTCGGTGTTCCGTGCTGCTTCTCCTCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC TGCGGGATCCTCT ACAGCGGGTG CCCCGGCG AGAGGCCATGCGACGGGNTCGACGGCTNCTGCATGGTGC ] [+] EMBL OSS12618A [ ACCCGTTTCTTTCTCGGCCCATCCAACACGCGCTCTTGCTTGAACGCGCAAAGAGAAACACGACGGGNGAGGCGAGCNAGATGAGGTTCTTCCTCAAGCTCGCTCCTCGGTGTTCCGTGCTGCTTCTCCTCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGNACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTACTTGCGGGATCCTCT ACAGCGGGTG CCCCGGCGAAGAGGCCATGCGACGGGNTCGA ] [+] EMBL OSS13381A [ ACCCGTTTCTTTCTCGGCCCATCCAACACGCGCTCTTGCTTGAACGCGCAAAGAGAAACACGACGGGCGAGGCGAGCGAGATGAGGTTCTTCCTCAAGCTCGCTCCTCGGTGTTCCGTGCTGCTTCTCCTCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC TGCGGGATCCTCT ACAGCGGGTG CCCCGGCG AGAGGCCATGCGACGCGCTCGACG ] [+] EMBL C27540 [ TCTTGCTGGTGACGGCGTCGCGGGGGCTTAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC TGCGGGATCCTCT ACAGCGGGTG CCCCGGCG AGAGGCCATGCGACGCGCTCGACGCCTGCTGCATGGTGCACGACCACTGCGTCGACACCCACAACGACGACTACCTGAACACGATGTGCAACGAGAACCTGCTGAGCTGCATCGACCGGGTGAGCGGGGCGACGTTCCCGGGGAACAAGTGCAACGTCGGGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTNTTCGCCGGCAAGATCCTCCACAAGCGGCGACGACGGGCCAATAGCTAGCCACCACGTTTTCGCACA ] [-] EMBL CB684649 [ TAACATCGGCGACCTGCTTGGCAGCACGCCGGCGAAGGACCAGGGATGTAGCCGGACGTGCGAATCCCAGTTTTGCACAATTGCACCTCTGCTGAGGTACGGCAAGTAC TGCGGGATCCTCT ACAGCGGGTG CCCCGGCG AGAGGCCATGCGACGCGCTCGACGCCTGCTGCATGGTGCACGACCACTGCGTCGACACCCACAACGACGACTACCTGAACACGATGTGCAACGAGAACCTGCTGAGCTGCATCGACCGGGTGAGCGGGGCGACGTTCCCGGGGAACAAGTGCAACGTC GGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAAGATCCTCCACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTCGCACATACACACGCTGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTCGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTACAAAAAAAAAAAAGGAATTATTAAATGGAACATGGTTGGTTATTGG ] [+] EMBL AU096298 [ AGGTACGCCAA TACTTGCGGGATCCTCTAACAGCGGGTGCCCCCGGCGAAGAGGCCATNCGACGCGNTCGACGCCTGCTGCATGGTNCACGACCCATGCGTCGACACCCACAACGACGANTACCTGAACACGATGTGCAACGAGAACCTGCTGAGCTGCATCGACCGGGTGAGCGGGGCGACGTTCCCGGGGAACAAGTGCAACGTC GGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAAGATCCTCCACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTCGCACATACACACGCTGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTCGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTACAAAAAAAAAAAAGAAATTATTAAATGGAACATGGTTGGTTATTGGTAAAAAAAAAAAA ] [-] EMBL CF334712 [ CGACGACTACTTGAACACGATGTGCAACGAGAACCTGCTGAGCTGCATCGACCGGGTGAGCGGGGCGACGTTCCCGGGGAACAAGTGCAACGTC GGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAAGATCCTCCACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTCGCACATACACACGCGGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTCGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTAC AAAAAAAAAAGAAATTATTAAATGGAACATGGTTGGTTATTGGTAGACAAAA ] [-] EMBL CF291862 [ AGCGGGGCGACGTTCCCGGGGAACAAGTGCAACGTC GGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAAGATCCTCCACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTCGCACATACACACGCTGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTCGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTAC AAAAAAAAAAAGAAATTATTAAATGGAACATGGTTGGTTATTGGTAAAAAA ] [+] EMBL AU197939 [ GTC GGCCAGACGGCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAAGATCCTCCACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTNGCACATACACACGCTGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTNGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTACAAAAAAAAAAAAGAAATTATTAAATGGAACATGGTTGGTTATTGGTAAAAAAAAAAAA ] [+] EMBL AU101749 [ nCGTCCGTCATCAGGGGGGTCATCGAGACGGCCGTGTTCGCCGGCAANATCCTCCACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTCGCACATACACACGCTGTACAGTGAATCAGTGATAGTACAAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGCGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGCATGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTCGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTACAAAAAAAAAAAAGAAATTATTAAATGGAACATGGTTGGTTATTGGTAAAAAAAAAAAA ] [+] EMBL AU160890 [ CACAAGC GCGACGAC GGCCAATAGCTAGCCACCACG TTTCGCACATACACACGCTGTACAGTGAATCAGTGATAGTACNAAGAAGCCTAGAGGTAATAAAACCGCGCGGCGGNGTCCACCGGTGGCCGTGGCGTGGCGGTGCGGCAACCAGAACGCGGNNTGCGCGCGCTTGCTGGCAGCTGGACCACCTGTGGTTCGTAGGCGTAGGCATTGGACCTCGGTTGTTGGTGCGGCAATGGCGTTGGCCACTGGCGACGGGGAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTACAAAAAAAAAAAA ] [+] EMBL CF291353 [ ctgaAGGAGTAACATTATGCTCTGTTAGTCAATAAGACGGAACATGTTACAAAAAAAAAAAAGAAATTATTAAATGGAACATGGTTGGTTATTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||