These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1749 fasta sequence [TCGATCCCCAAGTCTCCGCGGCGGAGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC-GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGCTTGACAT-GAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATATAAGGTAACG-CGTAAAGGAAGCAAC-AGCTGGTCATCAGTGGAATCAAAGCATGATCTAGTGGATATCTTCAAGCACAGGAGACAGCTTTACACCGTTGATATATATGGCACAGTTCAGTTGTGGGCAGAACCGCCCCGTTCATGGCCAGATGAAGATGCCCCGCAGGTGAATGACCCGTATCATAACCTCATTCACTATCCGCATCAACATGGAAAGCTTAACTGTTTGGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC-TGGAGAACAGGACGAAGGAGCT-CG-TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC-TCACGC-TGTCCGGCGCAGGCCGGAAGGACA-GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG-AAAGC-TA-CGGTACACATCCCCGTTGTCTCTGAACTTACTA-CAGTATATGTGACTGTCGCTAA-TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTT--GGACAACTCGTGG--TTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCCAAATTGTTTAAATTATCATCACCCGGTCAGAAAAAAAAGA] [+] EMBL CB645114 [TCGATCCCCAAGTCTCCGCGGCGGAGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGG ] [+] EMBL AK106385 [ CGGCGGAGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATTTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCGGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGCTTGACAT GAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATATAAGGTAACG CGTAAAGGAAGCAAC AGCTGGTCATCAGTGGAATCAAAGCATGATCTAGTGGATATCTTCAAGCACAGGAGACAGCTTTACACCGTTGATATATATGGCACAGTTCAGTTGTGGGCAGAACCGCCCCGTTCATGGCCAGATGAAGATGCCCCGCAGGTGAATGACCCGTATCATAACCTCATTCACTATCCGCATCAACATGGAAAGCTTAACTGTTTGGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGATCTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAAT ] [+] EMBL CB653156 [ AGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCCCCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGA ] [+] EMBL AU173503 [ TCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTAAGAC ] [+] EMBL AU184795 [ TCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGCAGGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCA ] [+] EMBL CB655779 [ CGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGAGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAAGGCCTTCTCC AGGCCATGTTGCTTGACATNGAATGACAC AACTTCACT ] [+] EMBL BE229876 [ AGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCCTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGCTTGACAT GAATGACACAAACTTCACTGTTGCTG CATCTTACGTGACCAGAAAGGATATAAGGTAACGCCGTAAAGGAAGCAACAAGCTGGTCATC GTGGAATTAAAag ] [+] EMBL OSS11342A [ CGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGCTTGACAT GAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATATAAGGTAACG CGTAAAGGAAGCAAC AGCTGGTCATCAGTGGAATCAAAGCATGATCTAGTGGATATCTTCAAGCACAGGAGNCAGCTTTACACCGTTGATATATATGGCACAGTTCAGTTGTGGGCAGAACCGCCCCGTTCATGGCCAGATGAAGATG CCCGCAGTGGAATGACCCGTATCATAACCTCATTCACTATCCGCATCA ] [-] EMBL CB655780 [ GTCATCAGTGGAATCAAAGCATGATCTAGTGGATATCTTCAAGCACAGGAGACAGCTTTACACCGTTGATATATATGGCACAGTTCAGTTGTGGGCAGAACCGCCCCGTTCATGGCCAGATGAAGATGCCCCGCAGGTGAATGACCCGTATCATAACCTCATTCACTATCCGCATCAACATGGAAAGCTTAACTGTTTGGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGAACTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTT GGACAACTCGTGG TTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCCAAATTGTTTAAATTATCATCACCCGGTCAGAAAAAAAAGA] [-] EMBL CB645115 [ GCCCCGCAGGTGAATGACCCGTATCATAACCTCATTCACTATCCGCATCAACATGGAAAGCTTAACTGTTTGGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGAACTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTT GGACAACTCGTGG TTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCC ] [+] EMBL AU184796 [ AGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGAACTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCAaaaaaaaaa ] [+] EMBL AU173504 [ AATGATAAGTTTGTGGTCTGGATTTTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATGAAAAGCTTACCGGTACACATCCCCGTTGTCTCTGAACTTACTACCAGTATATGTGACTGTCGCTAATTTTCATAAAAGTATTGGGCAaaaaaaaaa ] [+] EMBL C28204 [ gcntncgAACCTGAAGTNGAATTGTNTCTACTTCANTNNCTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTNAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGNAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTNAACTTACTA CAGTATATGTNACTGTGGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTTTGGGACAACTCGTGGGTTTTGTAATTATCGTGTAa ] [+] EMBL AU086019 [ CGCATTCAACCTTGGAGAACAGGACGAAGGAGCTACGTTCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCCTTCACGCTTGTNCCGCGCAGGCCGGAAGGACANGAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGAACTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTT GGACAACTCGTGG TTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCCAAATTGTTTAAAa ] consensusID : consensus_14628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 889 fasta sequence [AGGACACGCTCTTTCCTCATAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAAGGCCTTCTCCAAGGCCATGTTGCTTGACATGAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATTTAAGGTAACGCGTAAAAGGAGCAACAGCTGGTCATTAGTGGAATCAAAGCATGATCTATTGGGATATCTTCGAGCACAAGAAGACAGCTCTACCCCCGTTGATATTATATGGCCCAGCTACTATGTGTGGCCAAAATCCCACCCGGTTCTTGGTCCAAAGAAAGACCCCACCCCAGGGAAATGGACCCGGATCTTAACCCTCATTAGCCTTTCCGCTTTAACAATGGAAAAGTCTTAATGGTTTTGGGNGGGATACCCCCCACCTCTATG] [+] EMBL CA758190 [AGGACACGCTCTTTCCTCATAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAAGGCCTTCTCCAAGGCCATGTTGCTTGACATGAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATTTAAGGTAACGCGTAAAAGGAGCAACAGCTGGTCATTAGTGGAATCAAAGCATGATCTATTGGGATATCTTCGAGCACAAGAAGACAGCTCTACCCCCGTTGATATTATATGGCCCAGCTACTATGTGTGGCCAAAATCCCACCCGGTTCTTGGTCCAAAGAAAGACCCCACCCCAGGGAAATGGACCCGGATCTTAACCCTCATTAGCCTTTCCGCTTTAACAATGGAAAAGTCTTAATGGTTTTGGGNGGGATACCCCCCACCTCTATG] [+] EMBL D43587 [ TGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTNACTATCTGANATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCNACAAATGCGCTTAATGATTCNAAATNTTNGTGTGTACCNGAAAGGAAGAACCAAACNATTNGTntg ] consensusID : consensus_14628#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGATTTGCTTTAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCNCACCTGGATTCCTGTTGGTTCTTCCCATGGNTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATC] [+] EMBL CF323186 [GGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGATTTGCTTTAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCNCACCTGGATTCCTGTTGGTTCTTCCCATGGNTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 TCGATCCCCAAGTCTCCGCGGCGGAGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGC 60 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 GATCCGCTCCAGCCGAACCCCGCCGCACCGCCGCGGTAGCTGCCGTCGGCGAGGTGCGTC 120 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 TCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGG 180 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 CCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTC 240 consensus_14628#1 -------------------------AGGACACGCTCTTTCCTCAT-AATCTGCTGACGTT 34 consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 GCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTT 300 consensus_14628#1 TTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTA 94 consensus_14628#2 ---------------------------------GGTTATCTACAGCATCTGAATTGGTTA 27 consensus_14628#0 TTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTA 360 *************************** consensus_14628#1 TAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAG-----------GCGCCTA 143 consensus_14628#2 TAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGATTTGCTTTAGGCGCCTA 87 consensus_14628#0 TAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAG-----------GCGCCTA 409 ****************************************** ******* consensus_14628#1 GAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTA 203 consensus_14628#2 GAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTA 147 consensus_14628#0 GAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTA 469 ************************************************************ consensus_14628#1 ATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGG 263 consensus_14628#2 ATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGG 207 consensus_14628#0 ATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGG 529 ************************************************************ consensus_14628#1 AACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCT 323 consensus_14628#2 AACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCT 267 consensus_14628#0 AACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCT 589 ************************************************************ consensus_14628#1 ACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATT 383 consensus_14628#2 ACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATT 327 consensus_14628#0 ACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATT 649 ************************************************************ consensus_14628#1 CGTCTCCCGAGCACTGTTACAATCTTTGGCTCC-ACCTGGATTCCTGTTGGTTCTTCCCA 442 consensus_14628#2 CGTCTCCCGAGCACTGTTACAATCTTTGGCTCNCACCTGGATTCCTGTTGGTTCTTCCCA 387 consensus_14628#0 CGTCTCCCGAGCACTGTTACAATCTTTGGCTCC-ACCTGGATTCCTGTTGGTTCTTCCCA 708 ******************************** ************************** consensus_14628#1 TGGTT-GGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTA 501 consensus_14628#2 TGGNTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTA 447 consensus_14628#0 TGGTT-GGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTA 767 *** * ****************************************************** consensus_14628#1 GTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAAGGCCTTCTCCAAGGCCATGTTGC 561 consensus_14628#2 GTGGCATGCAGTTCAATC------------------------------------------ 465 consensus_14628#0 GTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGC 827 ****************** consensus_14628#1 TTGACATGAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATTTA 621 consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 TTGACATGAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATATA 887 consensus_14628#1 AGGTAACGCGTAAAAGGAGCAACAGCTGGTCATTAGTGGAATCAAAGCATGATCTATTGG 681 consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 AGGTAACGCGTAAAGGAAGCAACAGCTGGTCATCAGTGGAATCAAAGCATGATCTAGTGG 947 consensus_14628#1 GATATCTTCGAGCACAAGAAGACAGCTCTACCCCCGTTGATATTATATGGCCCAGCTACT 741 consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 -ATATCTTCAAGCACA-GGAGACAGCTTTACACC-GTTGATAT-ATATGGCACAGTT--C 1001 consensus_14628#1 ATGTGTGGCCAAAATCCCACCCGGTTCTTGGTCCAAAGAAAGACCCCACCCCAGGGAAAT 801 consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 AGTTGTGGGCAGAA--CCGCCCCGTTCATGG-CCAGATGAAGATGCC-CCGCAGGTGAAT 1057 consensus_14628#1 GGACCCGGATCTTAACCCTCATTAGCCTTTCCGCTTTAACAATGGAAAAGTCTTAATGGT 861 consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 G-ACCCGTATCATAACC-TCATTCAC-TATCCGCATCAACA-TGGAAAG--CTTAACTGT 1111 consensus_14628#1 TTTGGGNGGGATACCCCCCACCTCTATG-------------------------------- 889 consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 TT-GGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTT 1170 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 TGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGA 1230 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 CTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAA 1290 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 CCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACCT 1350 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 GGAGAACAGGACGAAGGAGCTCGTCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCC 1410 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 AGAGCCTCACGCTGTCCGGCGCAGGCCGGAAGGACAGAGGTACATGTGGTTAATCCCTTC 1470 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 GCTGAGATAAACCAATGGAGGATGAAAGCTACGGTACACATCCCCGTTGTCTCTGAACTT 1530 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 ACTACAGTATATGTGACTGTCGCTAATTTCATAAAAGTATTGGGCATATCTATAGCACTT 1590 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 CTGTAGATAAATCAACTGTCTGAACTTTGGACAACTCGTGGTTTGTGATTATCGTGTATT 1650 consensus_14628#1 ------------------------------------------------------------ consensus_14628#2 ------------------------------------------------------------ consensus_14628#0 TTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCCA 1710 consensus_14628#1 --------------------------------------- consensus_14628#2 --------------------------------------- consensus_14628#0 AATTGTTTAAATTATCATCACCCGGTCAGAAAAAAAAGA 1749 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||