These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1104 fasta sequence [TTCCTTCCACCACCAACCCCCCATCTCCTCCATCTCCACTCCACCTCACACGCCTCATCGACCTCCCAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGG-CTCGCGCCGG-AGCAGGCGCCTGTCCGGGGTCATCAGGGCGCAGTCGGCGCCGGCTTCGGCGGCGGCGGCGGCGCTGACGCAGGACGACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTGGGGCTGGGGACCGGGTCGACGGCGGCCTTCGCCGTCGCGGAGATCGGGGCGCTGCTGGCGTCCGGGAAGCTGAGCGGCATCGTCGGGGTGCCCACCTCCAAGCGCACGTTCGAGCAGGCGCAGTCGCTCGGCATCCCGCTCTCCACCCTCGACGACCACCCCCGCATCGACCTCGCCATCGACGGCGCCGACGAGGTCGATCCA-GACC-TTAACCTTGT-GAAA-GGGAGAGGTGGTGCCCTTCTCCGGGAGAAGATGGTTGAGGCAGCATCAGACAAGTTCATCGTT-GTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATA-ATAATTGAATATATTTCCCCACTCTTTCATTGCTAAAAAAAAAAAAAAAGAAGAGAGAAGAGGAAAGGAA] [+] EMBL AK060861 [TTCCTTCCACCACCAACCCCCCATCTCCTCCATCTCCACTCCACCTCACACGCCTCATCGACCTCCCAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGG CTCGCGCCGG AGCAGGCGCCTGTCCGGGGTCATCAGGGCGCAGTCGGCGCCGGCTTCGGCGGCGGCGGCGGCGCTGACGCAGGACGACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTGGGGCTGGGGACCGGGTCGACGGCGGCCTTCGCCGTCGCGGAGATCGGGGCGCTGCTGGCGTCCGGGAAGCTGAGCGGCATCGTCGGGGTGCCCACCTCCAAGCGCACGTTCGAGCAGGCGCAGTCGCTCGGCATCCCGCTCTCCACCCTCGACGACCACCCCCGCATCGACCTCGCCATCGACGGCGCCGACGAGGTCGATCCA GACC TTAACCTTGT GAAA GGGAGAGGTGGTGCCCTTCTCCGGGAGAAGATGGTTGAGGCAGCATCAGACAAGTTCATCGTT GTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATA ATAATTGAATATATTTCCCCACTC ] [+] EMBL AU101168 [ TCCACCACCAACCCCCCATCTCCTCCATCTCCACTCCACCTCACACGCCTCATCGACCTCCCAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGC GCGGCCTCGCGCCGGAAGCAGGCGCCTGTCCGGGGTCATCAGGGCGCAGTCGGCGCCGGCTTCGGCGGCGGCGGCGGCGCTGACGCAGGACGACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCANGTGGAGAGCGGGATGGTGCTGGGGCTGGGGACCGGGTCGACGGCGGCCTTCG CGTCGCGGAGATCGGGGCGCTGCTtg ] [+] EMBL CF326376 [ CAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGG CTCGCGCCGG AGCAGGCGCCTGTCCGGGGTCATCAGGGCGCAGTCGGCGCCGGCTTCGGCGGCGGCGGCGGCGCTGACGCAGGACGACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTGGGGCTGGGGACCGGGTCGACGGCGGCCTTCGCCGTCGCGGAGATCGGGGCGCTGCTGGCGTCCGGGAAGCTGAGCGGCATCGTCGGGGTGCCCACCTCCAAGCGCACGTTCGAGCAGGCGCAGTCGCTCGGCATCCCGCTCTCCACCCTCGACGACCACCCCCGCATCGACCTCGCCATCGACGGCGCCGACGAGGTCGATCCA GACC TTAACCTTGT GAAA GGGAGAGGTGGTGCCCTTCTCCGGGAGAAGATGGTTGAGGCAGCATCAGACAAGTTCATCGTT GTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCT ] [+] EMBL CB679453 [ GCGGCGGCGG CTCGCGCCGG AGCAGGCGCCTGCCCGGAGACATCAGGGCGCAGTCGGCGCCGGCTTCGGCGGCGGCGGCGGCGCTGACGCAGGACGACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGAGATGGTGCTGGGGCTGGGGACCGGGTCGACGGCGGTCTTCGCCGACACGGAGATCAGGGAGCTGCTGGCGTCCGGGAAGCT ] [-] EMBL CB665480 [ CATCGACCTCGCCATCGACGGCGCCGACGAGGTCGATCCA GACC TTAACCTTGT GAAA GGGAGAGGTGGTGCCCTTCTCCGGGAGAAGATGGTTGAGGCAGCATCAGACAAGTTCATCGTT GTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTGGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATAGATAATTGAATATATTTCCCCACTCTTTCATTGC ] [+] EMBL BI805763 [ gaGTCGATCCANGACCGTTAACCTTGTGGAAAGGGGAGAGGTGGTTCCCTTCTCCGGGAGAAGATGGTTGA GCAGCATCAGACAAGTTCATCGTTGGTTGTTGACGAGAC AAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGT CA TTCT CTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGC GC AACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTC AAAC AAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAA CA GC ATAAGATGCTTCACTAATA ATAATTGAATATATTTCCCCAaaaaaa ] [+] EMBL AU182331 [ GCCTGTGGAGGTTGTGCAGTTCTGCTGGAAGTNCAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATA ATAATTGAATATATTTCCCCACTCTTTCATTGCTAAAAAAAA ] [+] EMBL CA758893 [ TGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAGCCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCNATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATA ATAATTGAATATATTTCCCCA AAANAAAGGAGAAGGAAAAAAAAAAAGAAGAGAGAAGAGGAAAGGAA] [+] EMBL CF196370 [ CAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCNNNAATA ATAATTGAnnn ] [-] EMBL CF324766 [ TCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATTTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTTCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGGGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATA ATAATTGAATATATTTCCCCACTTTTTCATTGGTGAAAAAAAAAAAAAAAAAAAAAAAAaaa ] consensusID : consensus_14645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 936 fasta sequence [CATCGACCTCCCAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGGCGGCGCTGACGCAGGACGACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTGGGGCTGGGGACCGGGTCGACGGCGGCCTTCGCCGTCGCGGAGATCGGGGCGCTGCTGGCGTCCGGGAAGCTGAGCGGCATCGTCGGGGTGCCCACCTCCAAGCGCACGTTCGAGCAGGCGCAGTCGCTCGGCATCCCGCTCTCCACCCTCGACGACCACCCCCGCATCGACCTCGCCATCGACGGCGCCGACGAGGTCGATCCAGACCTTAACCTCGTGAAAGGGAGAGGTGGTGCCCTTCTCCGGGAGAAGATGGTTGAGGCAGCATCAGACAAGTTCATCGTTGTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGATGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATAATAATTGAATATATTTCCCCACTCT] [+] EMBL AK067117 [CATCGACCTCCCAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGGCGGCGCTGACGCAGGACGACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTGGGGCTGGGGACCGGGTCGACGGCGGCCTTCGCCGTCGCGGAGATCGGGGCGCTGCTGGCGTCCGGGAAGCTGAGCGGCATCGTCGGGGTGCCCACCTCCAAGCGCACGTTCGAGCAGGCGCAGTCGCTCGGCATCCCGCTCTCCACCCTCGACGACCACCCCCGCATCGACCTCGCCATCGACGGCGCCGACGAGGTCGATCCAGACCTTAACCTCGTGAAAGGGAGAGGTGGTGCCCTTCTCCGGGAGAAGATGGTTGAGGCAGCATCAGACAAGTTCATCGTTGTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGATGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTACGATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATAATAATTGAATATATTTCCCCACTCT] consensusID : consensus_14645#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TCCATCTCCACTCCACCTCACACGCCTCATCGACCTCCCAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGGCTCGCGCCGGAGCAGGCGCCTGTCCGGGGTCATCAGGGCGCAGTCGGCGCCGGCTTCGGCGGCGGCGGCGGCGCTGACGCAGGACGACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTGGGGCTGGGGACCGGGTCGACGGCGGGCTTCCCCGACCCGGACATCGGGGCGCTGCTGGTGCCCGGGAAGCTAACCGACATCGCCAGGGCGCCCGGCTGCAATTCCACGATAAATGAAGAACCTCCACTCGGATGGCTACACTCCTCCCTCATAACCAGGCAACTATCTATGTCTCCATCACACAGAACCATAAACGTGTATGATGATGCCTCACCCATCTTCTGCAGAAGAAGGGC] [+] EMBL CB665479 [TCCATCTCCACTCCACCTCACACGCCTCATCGACCTCCCAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGGCTCGCGCCGGAGCAGGCGCCTGTCCGGGGTCATCAGGGCGCAGTCGGCGCCGGCTTCGGCGGCGGCGGCGGCGCTGACGCAGGACGACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTGGGGCTGGGGACCGGGTCGACGGCGGGCTTCCCCGACCCGGACATCGGGGCGCTGCTGGTGCCCGGGAAGCTAACCGACATCGCCAGGGCGCCCGGCTGCAATTCCACGATAAATGAAGAACCTCCACTCGGATGGCTACACTCCTCCCTCATAACCAGGCAACTATCTATGTCTCCATCACACAGAACCATAAACGTGTATGATGATGCCTCACCCATCTTCTGCAGAAGAAGGGC] consensusID : consensus_14645#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 498 fasta sequence [AGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATCAGACAAGTTCATCGTTGTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATG-AAGGA--TGCG-AGGCGAAG-TG-AGA--TTGGAT-G---AAGG-CGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTG-AGTTTTGGGGTTTTGTTGTTG-CCGGTGTTGAATTTACGATTTTTTGTT-GGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATAATAATTGAATATATTT-CCCACTCTTTCATTGCTGAAAAAAAAAAAAAAAAAAAAAAAANAA] [+] EMBL AU065901 [AGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATCAGACAAGTTCATCGTTGTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATG AAGGA TGCG AGGCGAAN TG AGA TTGGAT G AAGG CGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTNTCAAAACAAAGTGAAGTTTTGGGGTTTTGTTGTTGCCCGGTGTTGAATTTACGATTTTTTGTT GGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATAATAATTGAATATATTT CCCACTCTTTCATTGCT ] [+] EMBL OSS15733A [AGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATCAGACAAGTTCATCGTTGTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATG AAGGA TGCG AGGCGAAG TG AGA TTGGAT G AAGG CGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTG AGTTTTGGGGTTTTGTTGTTG CCGGTGTTGAATTTACGATTTTTTGTT GGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATAATAA ] [+] EMBL AU089780 [ TTAAACGATGCAAGGATTTCCGTAGCCGAAGCTGCAGAATTTGGATCGCACACGGCCGGCAAACCCTNCGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTG AGTTTTGGGGTTTTGTTGTTG CCGGTGTTGAATTTACGATTTTTTGTTNGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATAATAATTGAATATATTTCCCCACTCTTTCATTGCTGAAAAAAAAAAAAAAAAAAAAAAAANAA] consensusID : consensus_14645#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [CNACTCACACGCCTCATCGACCTCCCAAGAAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGGCTCGCGCCGGANCANGCGCCTGTCCGGGGTCATCAGGGCGCANTCGGCGCCGGCTTCNGCGGCGGCGGCGGCGCTGACNCANGACGACCTGAANAGCTGGCGGCGGTGCGCGCGGTGGAACAAGTGGAAACGGGATGGTGCTGGGGCTGGGGACCGGGTCNACGCGGCCTTCGCCGTCCGGANATCNGGGCGCTGCTGGCGTCCGGGAAACTNAANCGGCATCTCCGGGTCCCACCTCCAACGCACGTTCGAACANGCGCANTCNCTCGGCATCCCGCTCTCCACCCTCGACGACCACCCCGCATCGACCTCGCCATCNACGGCGCCGACNAAGTCNATCCANAACTTAACCTTGTGAAAGGGANAAGTGGT] [+] EMBL BE228688 [CNACTCACACGCCTCATCGACCTCCCAAGAAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGGCTCGCGCCGGANCANGCGCCTGTCCGGGGTCATCAGGGCGCANTCGGCGCCGGCTTCNGCGGCGGCGGCGGCGCTGACNCANGACGACCTGAANAGCTGGCGGCGGTGCGCGCGGTGGAACAAGTGGAAACGGGATGGTGCTGGGGCTGGGGACCGGGTCNACGCGGCCTTCGCCGTCCGGANATCNGGGCGCTGCTGGCGTCCGGGAAACTNAANCGGCATCTCCGGGTCCCACCTCCAACGCACGTTCGAACANGCGCANTCNCTCGGCATCCCGCTCTCCACCCTCGACGACCACCCCGCATCGACCTCGCCATCNACGGCGCCGACNAAGTCNATCCANAACTTAACCTTGTGAAAGGGANAAGTGGT] consensusID : consensus_14645#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [CAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGNTGTTGAATTTNNNNNNTTNNNNTG] [+] EMBL CF196322 [CAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGNTGTTGAATTTNNNNNNTTNNNNTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14645#3 ------------------------------------------------------------ consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 ------------------------------------------------------------ consensus_14645#0 TTCCTTCCACCACCAACCCCCCATCTCCTCCATCTCCACTCCACCTCACACGCCTCATCG 60 consensus_14645#2 ------------------------------------------------------------ consensus_14645#4 ------------------------------------------------------------ consensus_14645#3 ------------------------------------------------------------ consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 ------------------------------------------------------------ consensus_14645#0 ACCTCCCAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTC 120 consensus_14645#2 ------------------------------------------------------------ consensus_14645#4 ------------------------------------------------------------ consensus_14645#3 ------------------------------------------------------------ consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 ---CATCGACCTCCCAAGAACCACCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCG 57 consensus_14645#0 CACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGGCTCGCGCCGGAGCAGGCGCCTGTCC 180 consensus_14645#2 ------------------------------------------------------------ consensus_14645#4 ------------------------------------------------------------ consensus_14645#3 ------------------------------------------------------------ consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 TCCGCTTCCACCCGGCCGCATCCGCCGCGCGCTGCGGCGGCGGCGGCGCTGACGCAGGAC 117 consensus_14645#0 GGGGTCATCAGGGCGCAGTCGGCGCCGGCTTCGGCGGCGGCGGCGGCGCTGACGCAGGAC 240 consensus_14645#2 ------------------------------------------------------------ consensus_14645#4 ------------------------------------------------------------ consensus_14645#3 ------------------------------------------------------------ consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 GACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTG 177 consensus_14645#0 GACCTGAAGAGGCTGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTG 300 consensus_14645#2 ------------------------------------------------------------ consensus_14645#4 ------------------------------------------------------------ consensus_14645#3 ------------------------------------------------------------ consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 GGGCTGGGGACCGGGTCGACGGCGGCCTTCGCCGTCGCGGAGATCGGGGCGCTGCTGGCG 237 consensus_14645#0 GGGCTGGGGACCGGGTCGACGGCGGCCTTCGCCGTCGCGGAGATCGGGGCGCTGCTGGCG 360 consensus_14645#2 ------------------------------------------------------------ consensus_14645#4 ------------------------------------------------------------ consensus_14645#3 ------------------------------------------------------------ consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 TCCGGGAAGCTGAGCGGCATCGTCGGGGTGCCCACCTCCAAGCGCACGTTCGAGCAGGCG 297 consensus_14645#0 TCCGGGAAGCTGAGCGGCATCGTCGGGGTGCCCACCTCCAAGCGCACGTTCGAGCAGGCG 420 consensus_14645#2 ------------------------------------------------------------ consensus_14645#4 ------------------------------------------------------------ consensus_14645#3 ------------------------------------------------------------ consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 CAGTCGCTCGGCATCCCGCTCTCCACCCTCGACGACCACCCCCGCATCGACCTCGCCATC 357 consensus_14645#0 CAGTCGCTCGGCATCCCGCTCTCCACCCTCGACGACCACCCCCGCATCGACCTCGCCATC 480 consensus_14645#2 ------------------------------------------------------------ consensus_14645#4 ------------------------------------------------------------ consensus_14645#3 -------------------------------------------------AGGAGATCTCA 11 consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 GACGGCGCCGACGAGGTCGATCCAGACCTTAACCTCGTGAAAGGGAGAGGTGGTGCCCTT 417 consensus_14645#0 GACGGCGCCGACGAGGTCGATCCAGACCTTAACCTTGTGAAAGGGAGAGGTGGTGCCCTT 540 consensus_14645#2 ------------------------------------------------------------ consensus_14645#4 ------------------------------------------------------------ consensus_14645#3 GCTTTGGAAGGCGTCGTTGAG----CATCAGACAAGTTCATCGTTGTTGTTGACGAGACA 67 consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 CTCCGGGAGAAGATGGTTGAGGCAGCATCAGACAAGTTCATCGTTGTTGTTGACGAGACA 477 consensus_14645#0 CTCCGGGAGAAGATGGTTGAGGCAGCATCAGACAAGTTCATCGTTGTTGTTGACGAGACA 600 consensus_14645#2 ------------TCCATCTCCACTCCACCTCACACGCCTCATCGACCTCCCAAGAA-CCA 47 consensus_14645#4 -------------------------CNACTCACACGCCTCATCGACCTCCCAAGAAACCA 35 consensus_14645#3 AAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTC 127 consensus_14645#5 ------------------------------------------------------CAGTTC 6 consensus_14645#1 AAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTC 537 consensus_14645#0 AAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGGTTGTGCAGTTC 660 consensus_14645#2 CCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCC 107 consensus_14645#4 CCACCGCCTTCTCCCATGGCCGCCGCCACCGTCTCCGTCCGCTTCCACCCGGCCGCATCC 95 * * consensus_14645#3 TGCTGGAAGTACAAC--CAAGTGAGATTGCAGGATCTGTTTAAC---GATGAAGGATGCG 182 consensus_14645#5 TGCTGGAAGTACAAC--CAAGTGAGATTGCAGGATCTGTTTAAC---GATGAAGGATGCG 61 consensus_14645#1 TGCTGGAAGTACAAC--CAAGTGAGATTGCAGGATCTGTTTAAC---GATGAAGGATGCG 592 consensus_14645#0 TGCTGGAAGTACAAC--CAAGTGAGATTGCAGGATCTGTTTAAC---GATGAAGGATGCG 715 consensus_14645#2 GCCGCGCGCTGCGGCGGCGGCTCGCGCCGGAGCAGGCGCCTGTCCGGGGTCATCAGGGCG 167 consensus_14645#4 GCCGCGCGCTGCGGCGGCGGCTCGCGCCGGANCANGCGCCTGTCCGGGGTCATCAGGGCG 155 * * * * * * * * * * * * * * * * *** consensus_14645#3 AGGCGAAG-TGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACA 241 consensus_14645#5 AGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACA 121 consensus_14645#1 AGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACA 652 consensus_14645#0 AGGCGAAGCTGAGATTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACA 775 consensus_14645#2 CAGTCGGCGCCGGCTTCGGCGGCGGCGGCGGCGCTGACGCAG--GACGACCTGAAGAGGC 225 consensus_14645#4 CANTCGGCGCCGGCTTCNGCGGCGGCGGCGGCGCTGACNCAN--GACGACCTGAANAG-C 212 * ** * ****** * ** *** ** ** consensus_14645#3 TCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGC----------------- 284 consensus_14645#5 TCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGC----------------- 164 consensus_14645#1 TCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGC----------------- 695 consensus_14645#0 TCGTTGATTTATACTTCAAGACGCCGATCAAGGATGCGTTGGCAGCAGGGAAGGAGATCT 835 consensus_14645#2 TGGCGGCGGTGCGCGCGGTGGAGCAGGTGGAGAGCGGGATGGTGCTGGGGCTGGGGACCG 285 consensus_14645#4 TGGCGGCGGTGCGCGCGGTGGAACAAGTGGA-AACGGGATGGTGCTGGGGCTGGGGACCG 271 * * * * * * * * * * * *** consensus_14645#3 ----------------------------------------------GACTTCGGTGATCA 298 consensus_14645#5 ----------------------------------------------AGCAGGGAAGGAGA 178 consensus_14645#1 ----------------------------------------------AGCAGGGAAGGAGA 709 consensus_14645#0 CAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGGTGATCA 895 consensus_14645#2 GGTCGACGG------------------------------CGGGCTTCCCCGACCCGGACA 315 consensus_14645#4 GGTCNACG-------------------------------CGGCCTTCGCCG-TCCGGANA 299 * * * consensus_14645#3 TCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGT--TTTGTTGTTG 356 consensus_14645#5 TCTCAGCTTTGGAAGGCGTCGTTG----AGCA----------TGGG-----CTGTTCCTG 219 consensus_14645#1 TCTCAGCTTTGGAAGGCGTCGTTG----AGCA----------TGGG-----CTGTTCCTG 750 consensus_14645#0 TCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGT--TTTGTTGTTG 953 consensus_14645#2 TCG-GGGCGCTGCTGGTGCCCGGGAAGCTAA-CCGACATCGCCAGGGCGCCCGGCTGCAA 373 consensus_14645#4 TCN-GGGCGCTGCTGGCGTCCGGGAAACTNAANCGGCATCTCCGGGTC--CCACCTCCAA 356 ** * * ** * * * ** * consensus_14645#3 CCG-GTGTTGAATTTACGATTTTTTGTTGGGATGTATAA-GCTATTGGG-GTGTAAAAGC 413 consensus_14645#5 GAC-ATGGCGACTTCGGTGATCATCGCTGGAACAGATGGCGTCAGTGTC-AAAACAAAGT 277 consensus_14645#1 GAC-ATGGCGACTTCGATGATCATCGCTGGAACAGATGGCGTCAGTGTC-AAAACAAAGT 808 consensus_14645#0 CCG-GTGTTGAATTTACGATTTTTTGTTGGGATGTATAA-GCTATTGGG-GTGTAAAAGC 1010 consensus_14645#2 TTCCACGATAAATGAAGAACCTCCACTCGGATGGCTACACTCCTCCCTC-ATAACCAGGC 432 consensus_14645#4 CGC-ACGTTCGAACANGCGCANTCNCTCGGCATCCCGCTCTCCACCCTCGACGACCACCC 415 * ** * consensus_14645#3 AGGCAATAAGATGCTTCACTAATAATAAT-TGAATATATTTCCC-ACTCTTTCATTGCTG 471 consensus_14645#5 GAGTTTTGGGGTTTTGTTGTTGCCGNTGT-TGAATTTNNNNNNT-TNNNNTG-------- 327 consensus_14645#1 GAGTTTTGGGGTTTTGTTGTTGCCGGTGT-TGAATTTACGATTT-TTTGTTGGGATGTAT 866 consensus_14645#0 AGGCAATAAGATGCTTCACTAATAATAAT-TGAATATATTTCCCCACTCTTTCATTGCTA 1069 consensus_14645#2 AACTATCTATGTCTCCATCACACAGAACCATAAACGTGTATGATGATGCCTCACCCATCT 492 consensus_14645#4 CGC-ATCGACCTCGCCATCN-ACGGCGCCGACNAAGTCNAT--CCANAACTTAACCTTGT 471 * * * * consensus_14645#3 AAAAAAAAAAAAAAAAAAAAAAAANAA--------------------------------- 498 consensus_14645#5 ------------------------------------------------------------ consensus_14645#1 AAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATAATAATTGAATATATT 926 consensus_14645#0 AAAAAAAAAAAAAAGAAGAGAGAAGAGGAAAGGAA------------------------- 1104 consensus_14645#2 TCTGCAGAAGAAGGGC-------------------------------------------- 508 consensus_14645#4 GAAAGGGANAAGTGGT-------------------------------------------- 487 consensus_14645#3 ---------- consensus_14645#5 ---------- consensus_14645#1 TCCCCACTCT 936 consensus_14645#0 ---------- consensus_14645#2 ---------- consensus_14645#4 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||