These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1509 fasta sequence [TCCTCGCGCAACAGCAGCGGGGCGGGGGCGGGGCGCGGCTTGGCGCGACGCCGAGTGGTGCATCCCGTGATTTCGCCGACGTCTTCGCCGCCCGCGGGGCGGGGGGCAGCAGCAGGAGGAGGAGGAGGAGGAGGGGGGAGGCATGGGGAACGCGAGCGGGCGGGAGGAGGACCCCGCGGCGGCGGCCGGGGAGGGGGACGTCGAGGACTCGTCGGTCCGGTCCTCGGAGCGCGGCTTCCCGCCGTACGGCGGAGGGGGCAACCACGTGCGGCGCGCGTGCTCGGTGGGCGTCGTCGGGGGCGGCGGGGGCGCCGGATCGCCGCCCGGGAGCCCCGGCCGCTCCCTCTCGCCGCGGATGTTCGTGCCCCAGACACCTGTGCCTCCACTCCAAAGAGCAGCTGATGTAACTCCAGTGTTCAACCGGATCTTAATGAATGAACAAGAAGAGGAATTTGATGGCCCCCCTCAAAAGGAAATTCCTGTCTTGATCGTGTGGACGCTTGGAGGAAAAAATGTATCTGTTGAAGGATCCTGGGATAACTGGAAATCAAGGAAACCCATGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGA-GGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC---GTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAACAAAAAGTAAAAAAGATGGCGAGGGATAAAGACCTGGAGGGGGGGCCGCGGCCCCAATGGGGCCTATAGGGAGGC] [+] EMBL AK101800 [TCCTCGCGCAACAGCAGCGGGGCGGGGGCGGGGCGCGGCTTGGCGCGACGCCGAGTGGTGCATCCCGTGATTTCGCCGACGTCTTCGCCGCCCGCGGGGCGGGGGGCAGCAGCAGGAGGAGGAGGAGGAGGAGGGGGGAGGCATGGGGAACGCGAGCGGGCGGGAGGAGGACCCCGCGGCGGCGGCCGGGGAGGGGGACGTCGAGGACTCGTCGGTCCGGTCCTCGGAGCGCGGCTTCCCGCCGTACGGCGGAGGGGGCAACCACGTGCGGCGCGCGTGCTCGGTGGGCGTCGTCGGGGGCGGCGGGGGCGCCGGATCGCCGCCCGGGAGCCCCGGCCGCTCCCTCTCGCCGCGGATGTTCGTGCCCCAGACACCTGTGCCTCCACTCCAAAGAGCAGCTGATGTAACTCCAGTGTTCAACCGGATCTTAATGAATGAACAAGAAGAGGAATTTGATGGCCCCCCTCAAAAGGAAATTCCTGTCTTGATCGTGTGGACGCTTGGAGGAAAAAATGTATCTGTTGAAGGATCCTGGGATAACTGGAAATCAAGGAAACCCATGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGA GGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC GTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCA ] [+] EMBL CB649796 [ CAGCACCTGGGCGGGGGCGGGGCGCGGCTTGGCGCGACGCCGAGTGGTGCATCCCGTGATTTCGCCGACGTCTTCGCCGCCCGCGGGGCGGGGGGCAGCAGCAGGAGGAGGAGGAGGAGGAGGGGGGAGGCATGGGGAACGCGAGCGGGCGGGAGGAGGACCCCGCGGCGGCGGCCGGGGAGGGGGACGTCGAGGACTCGTCGGTCCGGTCCTCGGAGCGCGGCTTCCCGCCGTACGGCGGAGGGGGCAACCACGTGCGGCGCGCGTGCTCGGTGGGCGTCGTCGGGGGCGGCGGGGGTACCGGATCCCAGGCCtcgacctt ] [+] EMBL OSS14690A [ TGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGA GGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGNCCTTGGTCTAACCCA ] [+] EMBL OSS15006A [ TGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCa ] [-] EMBL CB649797 [ TTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGA GGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC GTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATA ] [-] EMBL CB638631 [ CTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC GTTGTTATCGATGCTCA ] [+] EMBL CA757085 [ ATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGGTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTGATTTTACTACTAACAAAAAGTAAAAAAGATGGCGAGGGATAAAGACCTGGAGGGGGGGCCGCGGCCCCAATGGGGCCTATAGGGAGGC] [-] EMBL CF311955 [ AGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC GTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTAaaaaa ] consensusID : consensus_14650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 928 fasta sequence [ATTTCGGCACGAGATCAAGGCAAACCCATGCAGAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTCGATGTTCATGATTTTGTCCCTGAAAGTGTTGAAAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGAAAAGGATT-TCTCCAAGAACCACCGGTTC-TTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGG-CCCTTGGTCTAAC-CCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG-CCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTG-TAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAACAAAAAAAAAAAAAAA] [+] EMBL AA751769 [ATTTCGGCACGAGATCAAGGCAAACCCATGCAGAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTCGATGTTCATGATTTTGTCCCTGAAAGTGTTGAAAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGAAAAGGATT TCTCCAAGAACCACCGGTTC TTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGGCCCAGCACATA TCCTCAACCACCTCTTCATCGAGAAA GCTGGGGTGCCCATCCGCTGGTGGCCCCTTGGTCTAAC CCCCAGGTTTGA TC AATATG ] [-] EMBL CA759977 [ CTAGGTACAGTATCCAGGCACCCAGGGAAAAGGATTCTCAAAAAGAGCCACCGGTTC TTCCATCCCAACTCCATCTGGGTG TCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGG CCCTTGGTCTAAC CCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG CCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTG TAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAACAAAAAAAAAAAAAAA] [+] EMBL BI811050 [ GGTTCTTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGG CCCTTGGTCTAAC CCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGA GCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG CCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTAaaaaaaaa ] [+] EMBL BM037735 [ TGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGG CCCTTGGTCTAAC CCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG CCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTGCTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTTATAAAAAA ] [+] EMBL BM418826 [ CACATAGTCCTCAACCACCTCTTCATCGAGAAA GCT GGGTGCCCATCCACT GTGG CCCTTGGTCTAACACCACA GTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG CCCTGGTTTGTTTACCTCCGAGGGGCC AAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTG TAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACT TAAAAAA ] [+] EMBL BQ905948 [ GAAAGGCTGGGGTGCCCATCCGCTGGTGG CCCTTGGTCTAAC CCACAGGTTTGAGTCC AATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTG TAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAA ] consensusID : consensus_14650#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [TGACTGGACTGAAGGAGTAGAAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGGTTTGTTTACCCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTATCGATGCTCAAAGTATGAAATGTGTAGAA] [+] EMBL CF311954 [TGACTGGACTGAAGGAGTAGAAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGGTTTGTTTACCCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTATCGATGCTCAAAGTATGAAATGTGTAGAA] consensusID : consensus_14650#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [CCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCNCAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTNTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCNCAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096674 [CCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCNCAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTNTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCNCAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14650#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [TCTTTTTCCCATGAGGTAAACACGTCTGCACACGCGAGACCCTTCTTGTGGCGCTTTGGGCTGTCTTGATACACACATAGANTGTTACCCCCACTTCACTGAGAGTCCTCGGCGCCCCTGGCTTTGTTATACACCTCTCCGAGAGGGGCCCACAAGCCACTTCCACTTGGAGGGTTTTTTTTTATACCCCACATATTTCCACGCCACATTTTCCCGGCGTTGTGGTTTCGNTTANTTCCAGAATGGGGCTTCCACAGGGGATATCTGAAACNTGCGTGTATGGAGAAATTACCCCACCTTAGAACCCGCTGGAAATCCCACCACGAGAATCTTAGGTGCCCACGAGTTAGATCCTTGTGATCCCACTAGAGTTCTTAATTATTTTGAACCGATGCCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAA] [+] EMBL BQ908921 [TCTTTTTCCCATGAGGTAAACACGTCTGCACACGCGAGACCCTTCTTGTGGCGCTTTGGGCTGTCTTGATACACACATAGANTGTTACCCCCACTTCACTGAGAGTCCTCGGCGCCCCTGGCTTTGTTATACACCTCTCCGAGAGGGGCCCACAAGCCACTTCCACTTGGAGGGTTTTTTTTTATACCCCACATATTTCCACGCCACATTTTCCCGGCGTTGTGGTTTCGNTTANTTCCAGAATGGGGCTTCCACAGGGGATATCTGAAACNTGCGTGTATGGAGAAATTACCCCACCTTAGAACCCGCTGGAAATCCCACCACGAGAATCTTAGGTGCCCACGAGTTAGATCCTTGTGATCCCACTAGAGTTCTTAATTATTTTGAACCGATGCCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 TCCTCGCGCAACAGCAGCGGGGCGGGGGCGGGGCGCGGCTTGGCGCGACGCCGAGTGGTG 60 consensus_14650#1 ------------------------------------------------------------ consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 CATCCCGTGATTTCGCCGACGTCTTCGCCGCCCGCGGGGCGGGGGGCAGCAGCAGGAGGA 120 consensus_14650#1 ------------------------------------------------------------ consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 GGAGGAGGAGGAGGGGGGAGGCATGGGGAACGCGAGCGGGCGGGAGGAGGACCCCGCGGC 180 consensus_14650#1 ------------------------------------------------------------ consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 GGCGGCCGGGGAGGGGGACGTCGAGGACTCGTCGGTCCGGTCCTCGGAGCGCGGCTTCCC 240 consensus_14650#1 ------------------------------------------------------------ consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 GCCGTACGGCGGAGGGGGCAACCACGTGCGGCGCGCGTGCTCGGTGGGCGTCGTCGGGGG 300 consensus_14650#1 ------------------------------------------------------------ consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 CGGCGGGGGCGCCGGATCGCCGCCCGGGAGCCCCGGCCGCTCCCTCTCGCCGCGGATGTT 360 consensus_14650#1 ------------------------------------------------------------ consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 CGTGCCCCAGACACCTGTGCCTCCACTCCAAAGAGCAGCTGATGTAACTCCAGTGTTCAA 420 consensus_14650#1 ------------------------------------------------------------ consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 CCGGATCTTAATGAATGAACAAGAAGAGGAATTTGATGGCCCCCCTCAAAAGGAAATTCC 480 consensus_14650#1 ------------------------------------------------------------ consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 TGTCTTGATCGTGTGGACGCTTGGAGGAAAAAATGTATCTGTTGAAGGATCCTGGGATAA 540 consensus_14650#1 -----------------------------------------------------ATTTCGG 7 consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 CTGGAAATCAAGGAAACCCATGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACT 600 consensus_14650#1 CACGAGATCAAGGCAAACCCATGCAGAATCTGGGAAAGATCATTCGCTCCTGTTGATACT 67 consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 TCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGA 660 consensus_14650#1 TCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGA 127 consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ----------------TGACTGGACTGAAGGAGTAGAAACCTTCTT-GATGTTCATGATT 43 consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 TCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTT-GATGTTCATGATT 719 consensus_14650#1 TCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTCGATGTTCATGATT 187 consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 TTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTA 103 consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 TTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTA 779 consensus_14650#1 TTGTCCCTGAAAGTGTTGAAAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTA 247 consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 GCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCAT 163 consensus_14650#3 ------------------CCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCAT 42 consensus_14650#0 GCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCAT 839 consensus_14650#1 GCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCCAA-GAACCACCGGTTCTTCCAT 306 consensus_14650#4 --------TCTTTTTCCCATGAGGTAAACACGTCTGCACACGCGAGACCCTTCTTGTGGC 52 **** *** * * * * *** * * consensus_14650#2 -CCCAACTCCATCTGGGTGTTCTCA------ACTCACAGAACTCTGATGAAAGTTGTGCA 216 consensus_14650#3 -CCCAACTCCATCTGGGTGTTCTCA------ACTCNCAGAACTCTGATGAAAGTTGTGCA 95 consensus_14650#0 -CCCAACTCCATCTGGGTGTTCTCA------ACTCACAGAACTCTGATGAAAGTTGTGCA 892 consensus_14650#1 -CCCAACTCCATCTGGGTGTTCTCA------ACTCACAGAACTCTGATGAAAGTTGTGCA 359 consensus_14650#4 GCTTTGGGCTGTCTTGATACACACATAGANTGTTACCCCCACTTCACTGAGAGTCCTCGG 112 * * *** * * * ** * * *** *** *** * consensus_14650#2 CGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCC-CATCC 275 consensus_14650#3 CGGCCCCAGCACATAGTCCTCAACCACCTNTTCATCGAGAAAGGCTGGGGTGCC-CATCC 154 consensus_14650#0 CGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCC-CATCC 951 consensus_14650#1 CGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCC-CATCC 418 consensus_14650#4 CGCCCCTGGCT-----TTGTTATACACCTCTCC---GAGAGGGGCCCACAAGCCACTTCC 164 ** *** ** * * * ***** * * **** *** *** * *** consensus_14650#2 GCTGGTGG---CCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCT 332 consensus_14650#3 GCTGGTGG---CCCTTGGTCTAACCCNCAGGTTTGAGTCCAAATATGTAACCGTCGTCCT 211 consensus_14650#0 GCTGGTGG---CCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCT 1008 consensus_14650#1 GCTGGTGG---CCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCT 475 consensus_14650#4 ACTTGGAGGGTTTTTTTTTATACCCCACATATTTCCACGCCA-CATTTTCCCGGCGT--- 220 ** * * ** * ** *** ** *** * * ** * *** *** consensus_14650#2 GTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAAC 392 consensus_14650#3 GTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAAC 271 consensus_14650#0 GTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAAC 1068 consensus_14650#1 GTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAAC 535 consensus_14650#4 -TGTGGTTTCGNTTANTTCCAGAATGGG-GCTTCCACAGGGGATATCTGAAACNTGCG-T 277 * * * * * ** ** * ** *** * * * * * consensus_14650#2 TCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGA 452 consensus_14650#3 TCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGA 331 consensus_14650#0 TCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGA 1128 consensus_14650#1 TCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGA 595 consensus_14650#4 GTATGGAGAAATTACCCCACCTTAGAACCCGCTGGAAATCCCACCACGAGAATCTTAGGT 337 * * * ** * * ** * **** * * *** * * *** consensus_14650#2 GTATTTCCGATAACTTGCAGGAACTTTGGTTGGGTGTTGTACATGATGTACCATCATGAT 512 consensus_14650#3 GTATTTCCGATAACTTGCAGGAACTTTGGTTGG-TGTTGTACATGATGTACCATCATGAT 390 consensus_14650#0 GTATTTCCGATAACTTGCAGGAACTTTGGTTGG-TGTTGTACATGATGTACCATCATGAT 1187 consensus_14650#1 GTATTTCCGATAACTTGCAGGAACTTTGGTTGG-TGTTGTACATGATGTACCATCATGAT 654 consensus_14650#4 GCCCACGAGTTAGATCCTTGTGATCCCACTAGA--GTTCTTAATTATTTTGAACC--GAT 393 * * ** * * * * * *** * ** ** * * * *** consensus_14650#2 GTCTGGCGCCCTGGGTTTGTTTACCCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATA 572 consensus_14650#3 GTCTGGCGCCCTGG-TTTGTTTACC-TCCGAGGGGCCAAAGCATCATGAGTTTTTACAAA 448 consensus_14650#0 GTCTGGCGCCCTGG-TTTGTTTACC-TCCGAGGGGCCAAAGCATCATGAGTTTTTACATA 1245 consensus_14650#1 GTCTGGCGCCCTGG-TTTGTTTACC-TCCGAGGGGCCAAAGCATCATGAGTTTTTACATA 712 consensus_14650#4 GCCTGTTGTTTGTTCTTAATGTAAT------AAAAACAGAGGTGCTCATTTTACTACTAA 447 * *** * ** * ** ** ** * ** *** * consensus_14650#2 TCAGCATTTCGTTGTT---ATCGATGCTCAAAGTATGAAATGTGTAGAA----------- 618 consensus_14650#3 AAAAAAAAAAAAAAAA---AAAA------------------------------------- 468 consensus_14650#0 TCAGCATTTCGTTGTT---ATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTA 1302 consensus_14650#1 TCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTA 772 consensus_14650#4 AAAAAAAA---------------------------------------------------- 455 * * consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 GAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATT 1362 consensus_14650#1 GAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATT 832 consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 CTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCA 1422 consensus_14650#1 CTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCA 892 consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 ------------------------------------------------------------ consensus_14650#3 ------------------------------------------------------------ consensus_14650#0 TTTTACTACTAACAAAAAGTAAAAAAGATGGCGAGGGATAAAGACCTGGAGGGGGGGCCG 1482 consensus_14650#1 TTTTACTACTAAAAAAAAAACAAAAAAAAAAAAAAA------------------------ 928 consensus_14650#4 ------------------------------------------------------------ consensus_14650#2 --------------------------- consensus_14650#3 --------------------------- consensus_14650#0 CGGCCCCAATGGGGCCTATAGGGAGGC 1509 consensus_14650#1 --------------------------- consensus_14650#4 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||