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Oryza sativa
cluster # 14657 cluster # 14657       Sequences # 17       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14657#0 length = 1483 sequences # 11  
consensus_14657#1 length = 596 sequences # 1  
consensus_14657#2 length = 460 sequences # 4  
consensus_14657#3 length = 449 sequences # 1  

consensusID : consensus_14657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1483
fasta sequence
                              [CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGGCGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGGTACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATCACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG-CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT-GAAGACTCCTATGT-CCGGGGTCGTGG-CAGAGGAAGGGGGCGTGGACGTGGAA-GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAAA]

[+] EMBL AK071715             [CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGGCGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGGTACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATCACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTAT                                          ]
[+] EMBL AU064231             [                                                                                                                                                                                                                                                                                                  CCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTATGGAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAANGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OS0595A              [                                                                                                                                                                                                                                                                                                  CCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAAGGGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTTGGTATGG AACAATCAAGGTGGGTACAACCAAGGTGGTGGGTATTATGGTAACCAAGGTNGGTATGGTGGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU091626             [                                                                                                                                                                                                                                                                                                                                                                                                                                                           TATTGAAGAAGCCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTC ATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCC GCAACAGCCGCTCCTCCAGCCAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGTCCCGGGGTCGTGGNCAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK059602             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTGTGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACC                                                                                          ]
[+] EMBL AA754283             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         cGAGAAGAACTCTHCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTRGSTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGG AACTACCARG AAATGGTGGATATAACCGAGGACGGGGTDGGAWGCGCGGGAGGGGMAATTGGAATTACCGTGGCGGGTACGAACGAGGMARAGGTGGCGGTTTTCCTGGTGGAA GGGRTATGGC GSCSCGGGCGGGGAAGAATGGGTGGCC TGGTGGRCGAGGAAACTRAARATCCAARCARTGAGCA ATGGGTGAG  RRATCCAT                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU094657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCTTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA753752             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAA ]
[-] EMBL BI306414             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCT                                                                  ]
[+] EMBL CF329994             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAA ]
[-] EMBL CF329993             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAAA]


>consensus_14657#0 CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCC CCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGG CGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGG TACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATC ACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGG AGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTT GCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTC AGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGT CATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGG TACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAGCAGGCGCCA CCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTATGAAGACTCCTATGTCCGG GGTCGTGGCAGAGGAAGGGGGCGTGGACGTGGAAGGGGTTGGGGTAGAGGAGGTTATGGT GGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGAT AACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAA GGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAA AATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGT GGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGC GGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCA GATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATA TCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTC CCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCT TTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTG GCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCC CGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTA TTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAAA



consensusID : consensus_14657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence
                              [AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGGGTTGGTTATCACCTGCTGGCCAGTTTTGCTTGTTTCTCACGGGTCGATGAATGCTGAACATGCCTCTATGTTCCTGCCCGCCGTATTTACCTGATGCTATAAAATCCTGCCTCTATGCTGAGNCATCCCCTATGTTTTTACACCTACCCACCGCCCTCTGTCTGCCTGCGACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCCGCCCTGTGCGGGACGTGCTTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC]

[+] EMBL CA755688             [AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGGGTTGGTTATCACCTGCTGGCCAGTTTTGCTTGTTTCTCACGGGTCGATGAATGCTGAACATGCCTCTATGTTCCTGCCCGCCGTATTTACCTGATGCTATAAAATCCTGCCTCTATGCTGAGNCATCCCCTATGTTTTTACACCTACCCACCGCCCTCTGTCTGCCTGCGACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCCGCCCTGTGCGGGACGTGCTTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC]


>consensus_14657#1 AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAAT GGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGA ATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGT TATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGT TTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCG GGTATCATCCTGTAGTCAATCTTTCAGGGTTGGTTATCACCTGCTGGCCAGTTTTGCTTG TTTCTCACGGGTCGATGAATGCTGAACATGCCTCTATGTTCCTGCCCGCCGTATTTACCT GATGCTATAAAATCCTGCCTCTATGCTGAGNCATCCCCTATGTTTTTACACCTACCCACC GCCCTCTGTCTGCCTGCGACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCC GCCCTGTGCGGGACGTGCTTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC



consensusID : consensus_14657#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 460
fasta sequence
                              [CTAGATTACCTCACTAAGGGAATAGC-TGCGGTCGCGGGCGGGGAAGAATGGGTGG-CGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCT-GAGCGCGAGGTTTGGTTGTGA-GCATAATGCCTTTTTCCCAAAGGTATCCT-GTAGTCTTTCGAT-GATGTTCGG-GTATCATC-CTGTAGTCAATCTTTCAG-TGTTGGTTATCAGCT-GCTGGCGA-GTTTTGC-TTGTTTCTCA-ATGGT--CGATGAATGCTGAGCATGC-CTCTATGTTCA-TGCCCGTCGTATTTAC-CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]

[+] EMBL CB967225             [CTAGATTACCTCACTAAGGGAATAGC TGCGGTCG GGGCGGGGAAG ACGGGTGG CCGGGT GACGAGG AACTGAAGATCCAAGCAG GAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT GGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCT GAGCGCGAGGTTTGGTTGTGA GCATAATGCCTTTTTCCCAAAGGTATCCT GTAGTCTTTCGAT GATGTTCGG GTATCATC CTGTAGTCAATCTTTCAG TGTTGGTTATCAGCT GCTGGCGA GTTTTGC TTGTTTCTCA ATGGT  CGATGAATGCTGAGCATGC CTCTATGTTCA TGCCCGTCGTATTTAC CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]
[+] EMBL CB964852             [       ACCTCACTAAGGGAATAGC TGCGG CGCGGGCGGGGAAGAATGGGTGG CGTGGTGGACGAGGAAACTGAAGAT CAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT GGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCT GAGCGCGAGGTTTGGTTGTGA GCATAATGCCTTTTTCCCAAAGGTATCCT GTAGTCTTTCGAT GATGTTCGG GTATCATC CTGTAGTCAATCTTTCAG TGTTGGTTATCAGCT GCTGGCGA GTTTTGC TTGTTTCTCA ATGGT  CGATGAATGCTGAGCATGC CTCTATGTTCA TGCCCGTCGTATTTAC CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]
[+] EMBL CB967477             [               cAGGGACTACCTTGCGGTCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCA GGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT GGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCT GAGCGCGAGGTTTGGTTGTGA GCATAATGCCTTTTTCCCAAAGGTATCCT GTAGTCTTTCGAT GATGTTCGG GTATCATC CTGTAGTCAATCTTTCAG TGTTGGTTATCAGCT GCTGGCGA GTTTTGC TTGTTTCTCA ATGGT  CGATGAATGCTGAGCATGC CTCTATGTTCA TGCCCGTCGTATTTAC CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]
[+] EMBL CB967234             [                    AATAGC TGCGG CGCGGGCGGGGAAGAATGGGTGG CGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTNGGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCTNGAGCGCGAGGTTTGGTTGTGACGCATAATGCCTTTTTCCCAAAGGTATCCTNGTAGTCTTTCGATNGATGTTCGGTGTATCATCNCTGTAGTCAATCTTTCAGTTGTTGGTTATCAGCTNGCTGGCGACGTTTTGCGTTGTTTCTCANATGGTTNCGATGAATGCTGAGCATGCNCTCTATGTTCANTGCCCGTCGTATTTACNCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA]


>consensus_14657#2 CTAGATTACCTCACTAAGGGAATAGCTGCGGTCGCGGGCGGGGAAGAATGGGTGGCGTGG TGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTA CTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATG TGTTGGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGC ATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTG TAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGT CGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAA TTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA



consensusID : consensus_14657#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence
                              [GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTTGTTTTCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTATCCTGTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGTTGGTTATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTGATGCATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCCTCTAGTGCTGAGCAAAAAAAAAAAAAAAAAACA]

[+] EMBL CB964849             [GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTTGTTTTCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTATCCTGTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGTTGGTTATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTGATGCATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCCTCTAGTGCTGAGCAAAAAAAAAAAAAAAAAACA]


>consensus_14657#3 GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGCAGAT GGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCA GTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTTGTTT TCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTATCCT GTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGTTGGT TATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTGATGC ATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCCTCTA GTGCTGAGCAAAAAAAAAAAAAAAAAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14657#0      CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCC 60
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      CCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGG 120
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      CGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGG 180
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      TACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATC 240
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      ACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGG 300
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      AGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTT 360
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      GCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTC 420
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      AGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGT 480
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      CATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGG 540
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      TACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAGCAGGCGCCA 600
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      CCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTATGAAGACTCCTATGTCCGG 660
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      GGTCGTGGCAGAGGAAGGGGGCGTGGACGTGGAAGGGGTTGGGGTAGAGGAGGTTATGGT 720
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      GGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGAT 780
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      AACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAA 840
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      GGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAA 900
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      AATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGT 960
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ------------------------------------------------------------
                                                                                   

consensus_14657#0      GGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGC 1020
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      -------------------------CTAGATTACCTCACTAAGGGAATAGCTGCGGTCGC 35
consensus_14657#1      --------------AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGC 46
                                                                                   

consensus_14657#0      GGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAA-GATCCAAGCAGTGAGC 1079
consensus_14657#3      ----GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGC 56
consensus_14657#2      GGGCGGGGAAGAATGGGTGGC-GTGGTGGACGAGGAAACTGAA-GATCCAAGCAGTGAGC 93
consensus_14657#1      GGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAA-GATCCAAGCAGTGAGC 105
                           ***************** ***** ***** ********* ****** *********

consensus_14657#0      AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 1139
consensus_14657#3      AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 116
consensus_14657#2      AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 153
consensus_14657#1      AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 165
                       ************************************************************

consensus_14657#0      ATCAGGG-AAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGT-TTGGTTTG--TT 1194
consensus_14657#3      ATCAGTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTT 176
consensus_14657#2      ATCAGGG-AAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGT-TTGGTTNG--TT 208
consensus_14657#1      ATCAGGG-AAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGT-TTGGTTTG--TT 220
                       ***** * ************************ ************** ******    **

consensus_14657#0      GTTTTCCCT-GAGCGC-GAGGTTTGGTTGT-GAGCATAA-TGCCTTTTTCCCAA-AGGTA 1249
consensus_14657#3      GTTTTCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTA 236
consensus_14657#2      GTTTTCCCT-GAGCGC-GAGGTTTGGTTGT-GAGCATAA-TGCCTTTTTCCCAA-AGGTA 263
consensus_14657#1      GTTTTCCCT-GAGCGC-GAGGTTTGGTTGT-GAGCATAA-TGCCTTTTTCCCAA-AGGTA 275
                       ********* ****** ************* ******** ************** *****

consensus_14657#0      TCCTGT-AGTCTTTC-GATGATGTTC-GGGTATCATCCTG-TAGTCAATCTTTCAGT-GT 1304
consensus_14657#3      TCCTGTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGT 296
consensus_14657#2      TCCTGT-AGTCTTTC-GATGATGTTC-GGGTATCATCCTG-TAGTCAATCTTTCAGT-GT 318
consensus_14657#1      TCCTGT-AGTCTTTC-GATGATGTTC-GGGTATCATCCTG-TAGTCAATCTTTCAGG-GT 330
                       ****** ******** ********** ************  ***************  **

consensus_14657#0      TGGTTATC-AGCTGCTGGCGAG--TTTTGCTTGTTTCTCA-ATGGTCG-ATGAATG-CTG 1358
consensus_14657#3      TGGTTATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTG 356
consensus_14657#2      TGGTTATC-AGCTGCTGGCGAG--TTTTGCTTGTTTCTCA-ATGGTCG-ATGAATG-CTG 372
consensus_14657#1      TGGTTATC-ACCTGCTGGCCAG--TTTTGCTTGTTTCTCA-CGGGTCG-ATGAATG-CTG 384
                       ******** * ******** *   ******** *******   ***** ******* ***

consensus_14657#0      A-GCATGCCTC-TATGTTCATGCCC-GTCGTATTTACCT-GATGTTATTAAATTCATGCC 1414
consensus_14657#3      ATGCATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCC 416
consensus_14657#2      A-GCATGCCTC-TATGTTCATGCCC-GTCGTATTTACCT-GATGTTATTAAATTCATGCC 428
consensus_14657#1      A-ACATGCCTC-TATGTTCCTGCCC-GCCGTATTTACCT-GATGCTATAAAATCC-TGCC 439
                       *  ******** ******* ***** * *********** **** *** **** * ****

consensus_14657#0      TCTA-TGCTGAGCAATCCCCTATGTTATTA-AATTGTTCATTCAATTTGTGCAGTTTTCT 1472
consensus_14657#3      TCTAGTGCTGAGCAAAAAAAAAAAAAAAAA-ACA-------------------------- 449
consensus_14657#2      TCTA-TGCTGAGCAAAAAAAAAAAAAAAAA-ACA-------------------------- 460
consensus_14657#1      TCTA-TGCTGAGNCATCCCCTATGTTTTTACACCTACCCACCGCCCTCTGTCTGCCTGCG 498
                       **** *******  *      *       * *                            

consensus_14657#0      TCAAAAAAAAA------------------------------------------------- 1483
consensus_14657#3      ------------------------------------------------------------
consensus_14657#2      ------------------------------------------------------------
consensus_14657#1      ACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCCGCCCTGTGCGGGACGTGC 558
                                                                                   

consensus_14657#0      --------------------------------------
consensus_14657#3      --------------------------------------
consensus_14657#2      --------------------------------------
consensus_14657#1      TTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC 596
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)