These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1483 fasta sequence [CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGGCGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGGTACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATCACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG-CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT-GAAGACTCCTATGT-CCGGGGTCGTGG-CAGAGGAAGGGGGCGTGGACGTGGAA-GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAAA] [+] EMBL AK071715 [CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGGCGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGGTACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATCACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTAT ] [+] EMBL AU064231 [ CCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTATGGAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAANGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATA ] [+] EMBL OS0595A [ CCAGGATCGGAGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTTGCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTCAGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAAGGGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTTGGTATGG AACAATCAAGGTGGGTACAACCAAGGTGGTGGGTATTATGGTAACCAAGGTNGGTATGGTGGTTAT ] [+] EMBL AU091626 [ TATTGAAGAAGCCCTTGTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTC ATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCC GCAACAGCCGCTCCTCCAGCCAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGTCCCGGGGTCGTGGNCAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGA ] [+] EMBL AK059602 [ GTTCCACTAGAGATGACTCGTCATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTGTGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACC ] [+] EMBL AA754283 [ cGAGAAGAACTCTHCTGGGTACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCGTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTRGSTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGG AACTACCARG AAATGGTGGATATAACCGAGGACGGGGTDGGAWGCGCGGGAGGGGMAATTGGAATTACCGTGGCGGGTACGAACGAGGMARAGGTGGCGGTTTTCCTGGTGGAA GGGRTATGGC GSCSCGGGCGGGGAAGAATGGGTGGCC TGGTGGRCGAGGAAACTRAARATCCAARCARTGAGCA ATGGGTGAG RRATCCAT ] [+] EMBL AU094657 [ GCGCCTCCAG CAGGCGCCACCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTAT GAAGACTCCTATGT CCGGGGTCGTGG CAGAGGAAGGGGGCTTGGACGTGGAA GGGGTTGGGGTAGAGGAGGTTATGGTGGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGATAACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAAGGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAAAATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGTGGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGA ] [+] EMBL CA753752 [ AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAA ] [-] EMBL BI306414 [ GAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCTGCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCT ] [+] EMBL CF329994 [ CCCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAA ] [-] EMBL CF329993 [ CCGTCGTATTTACCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAATTGTTCATTCAATTTGTGCAGTTTTCTTCAAAAAAAAA] consensusID : consensus_14657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGGGTTGGTTATCACCTGCTGGCCAGTTTTGCTTGTTTCTCACGGGTCGATGAATGCTGAACATGCCTCTATGTTCCTGCCCGCCGTATTTACCTGATGCTATAAAATCCTGCCTCTATGCTGAGNCATCCCCTATGTTTTTACACCTACCCACCGCCCTCTGTCTGCCTGCGACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCCGCCCTGTGCGGGACGTGCTTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC] [+] EMBL CA755688 [AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTTTTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGGGTTGGTTATCACCTGCTGGCCAGTTTTGCTTGTTTCTCACGGGTCGATGAATGCTGAACATGCCTCTATGTTCCTGCCCGCCGTATTTACCTGATGCTATAAAATCCTGCCTCTATGCTGAGNCATCCCCTATGTTTTTACACCTACCCACCGCCCTCTGTCTGCCTGCGACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCCGCCCTGTGCGGGACGTGCTTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC] consensusID : consensus_14657#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 460 fasta sequence [CTAGATTACCTCACTAAGGGAATAGC-TGCGGTCGCGGGCGGGGAAGAATGGGTGG-CGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCT-GAGCGCGAGGTTTGGTTGTGA-GCATAATGCCTTTTTCCCAAAGGTATCCT-GTAGTCTTTCGAT-GATGTTCGG-GTATCATC-CTGTAGTCAATCTTTCAG-TGTTGGTTATCAGCT-GCTGGCGA-GTTTTGC-TTGTTTCTCA-ATGGT--CGATGAATGCTGAGCATGC-CTCTATGTTCA-TGCCCGTCGTATTTAC-CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA] [+] EMBL CB967225 [CTAGATTACCTCACTAAGGGAATAGC TGCGGTCG GGGCGGGGAAG ACGGGTGG CCGGGT GACGAGG AACTGAAGATCCAAGCAG GAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT GGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCT GAGCGCGAGGTTTGGTTGTGA GCATAATGCCTTTTTCCCAAAGGTATCCT GTAGTCTTTCGAT GATGTTCGG GTATCATC CTGTAGTCAATCTTTCAG TGTTGGTTATCAGCT GCTGGCGA GTTTTGC TTGTTTCTCA ATGGT CGATGAATGCTGAGCATGC CTCTATGTTCA TGCCCGTCGTATTTAC CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA] [+] EMBL CB964852 [ ACCTCACTAAGGGAATAGC TGCGG CGCGGGCGGGGAAGAATGGGTGG CGTGGTGGACGAGGAAACTGAAGAT CAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT GGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCT GAGCGCGAGGTTTGGTTGTGA GCATAATGCCTTTTTCCCAAAGGTATCCT GTAGTCTTTCGAT GATGTTCGG GTATCATC CTGTAGTCAATCTTTCAG TGTTGGTTATCAGCT GCTGGCGA GTTTTGC TTGTTTCTCA ATGGT CGATGAATGCTGAGCATGC CTCTATGTTCA TGCCCGTCGTATTTAC CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA] [+] EMBL CB967477 [ cAGGGACTACCTTGCGGTCGCGGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCA GGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTT GGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCT GAGCGCGAGGTTTGGTTGTGA GCATAATGCCTTTTTCCCAAAGGTATCCT GTAGTCTTTCGAT GATGTTCGG GTATCATC CTGTAGTCAATCTTTCAG TGTTGGTTATCAGCT GCTGGCGA GTTTTGC TTGTTTCTCA ATGGT CGATGAATGCTGAGCATGC CTCTATGTTCA TGCCCGTCGTATTTAC CTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA] [+] EMBL CB967234 [ AATAGC TGCGG CGCGGGCGGGGAAGAATGGGTGG CGTGGTGGACGAGGAAACTGAAGATCCAAGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGGGAAAAAAGTTATCTATTTATGTGTTNGGGAGCCCTCATGTTTGGTTNGTTGTTTTCCCTNGAGCGCGAGGTTTGGTTGTGACGCATAATGCCTTTTTCCCAAAGGTATCCTNGTAGTCTTTCGATNGATGTTCGGTGTATCATCNCTGTAGTCAATCTTTCAGTTGTTGGTTATCAGCTNGCTGGCGACGTTTTGCGTTGTTTCTCANATGGTTNCGATGAATGCTGAGCATGCNCTCTATGTTCANTGCCCGTCGTATTTACNCTGATGTTATTAAATTCATGCCTCTATGCTGAGCAAAAAAAAAAAAAAAAAACA] consensusID : consensus_14657#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTTGTTTTCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTATCCTGTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGTTGGTTATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTGATGCATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCCTCTAGTGCTGAGCAAAAAAAAAAAAAAAAAACA] [+] EMBL CB964849 [GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGCAGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAATATCAGTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTTGTTTTCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTATCCTGTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGTTGGTTATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTGATGCATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCCTCTAGTGCTGAGCAAAAAAAAAAAAAAAAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14657#0 CGTATCGTTGGCTCCGCCTCTCCTAGGGTTTTAGCTCCCCTCTCCCCTCCCCTCCCCTCC 60 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 CCTCCCGCCGCCTCCTCCTCCTCACGCTTCGCAATCCCTTCCACCACCTCGCCGCGGCGG 120 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 CGACGAGCGGGCGGCGCCGGCGGCGCAGGCGCAGGCGCGGGGGCGGCGGAGATGGACCGG 180 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 TACCAGAGGGTGGAGCGGCCGCGGCCGGAGTCGGCCATCGAGGAGAACGAGATCCGCATC 240 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 ACCGCGCAGGGGCTCATCCGCAACTACGTCTCCTACGCCACGTCCCTCCTCCAGGATCGG 300 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 AGGATTAAAGAGATTGTTCTGAAGGCCATGGGGCAGGCAATCAGCAAATCTGTTGCTGTT 360 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 GCAGAAATTATCAAGAAAAGAGTCCCTGGGCTTTATCAAGATACCAACATCAGTTCTGTC 420 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 AGCATCACTGATGTCTGGGAACCTATTGAAGAAGGCCTTGTTCCACTAGAGATGACTCGT 480 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 CATGTTTCGATGATTTCAATTACCTTATCTCCCAGAGATCTGGACAAGAACTCTCCTGGG 540 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 TACCAAACCCCAGTTTATGTTGAACAACCCCGGCAACAGCCGCGCCTCCAGCAGGCGCCA 600 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 CCACCACCACAGCGCCAAGTTCGTCAACCACCACCTGATTATGAAGACTCCTATGTCCGG 660 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 GGTCGTGGCAGAGGAAGGGGGCGTGGACGTGGAAGGGGTTGGGGTAGAGGAGGTTATGGT 720 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 GGTTATGGTGGATATGGAAACAATCAAGGTGGGTACAACCAAGGTGGTGGGTACTATGAT 780 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 AACCAAGGTGGGTATGGTGGCTATGATAATCAGGGAGGATATGGTGGCTATGATAATCAA 840 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 GGGGGATATGGTGGTGGTGGATATGGCTACAACCAAGGCAGATATGGAAACTACCAAGAA 900 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 AATGGTGGATATAACCGAGGACGGGGTGGCATGCGCGGGAGGGGCAATTGGAATTACCGT 960 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ------------------------------------------------------------ consensus_14657#0 GGCGGGTACGAACGAGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGC 1020 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 -------------------------CTAGATTACCTCACTAAGGGAATAGCTGCGGTCGC 35 consensus_14657#1 --------------AGGCAGAGGTGGCGGTTTTCCTGGTGGAAGGGGATATGGCGGCCGC 46 consensus_14657#0 GGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAA-GATCCAAGCAGTGAGC 1079 consensus_14657#3 ----GGGGAAGAATGGGTGGCCGTGGTTGACGATGAAACTGAATGATCCATGCAGTGAGC 56 consensus_14657#2 GGGCGGGGAAGAATGGGTGGC-GTGGTGGACGAGGAAACTGAA-GATCCAAGCAGTGAGC 93 consensus_14657#1 GGGCGGGGAAGAATGGGTGGCCGTGGTGGACGAGGAAACTGAA-GATCCAAGCAGTGAGC 105 ***************** ***** ***** ********* ****** ********* consensus_14657#0 AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 1139 consensus_14657#3 AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 116 consensus_14657#2 AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 153 consensus_14657#1 AGATGGGTGAGGAGAATCCATGGGCTACTGGTGATATTTAAGTGCATGCTTTATTTAAAT 165 ************************************************************ consensus_14657#0 ATCAGGG-AAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGT-TTGGTTTG--TT 1194 consensus_14657#3 ATCAGTGTAAAAAAGTTATCTATTTATGTGTTTGGGAGCCCTCATGTCTTGGTTTTGTTT 176 consensus_14657#2 ATCAGGG-AAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGT-TTGGTTNG--TT 208 consensus_14657#1 ATCAGGG-AAAAAAGTTATCTATTTATGTGTT-GGGAGCCCTCATGT-TTGGTTTG--TT 220 ***** * ************************ ************** ****** ** consensus_14657#0 GTTTTCCCT-GAGCGC-GAGGTTTGGTTGT-GAGCATAA-TGCCTTTTTCCCAA-AGGTA 1249 consensus_14657#3 GTTTTCCCTTGAGCGCTGAGGTTTGGTTGTTGAGCATAAGTGCCTTTTTCCCAACAGGTA 236 consensus_14657#2 GTTTTCCCT-GAGCGC-GAGGTTTGGTTGT-GAGCATAA-TGCCTTTTTCCCAA-AGGTA 263 consensus_14657#1 GTTTTCCCT-GAGCGC-GAGGTTTGGTTGT-GAGCATAA-TGCCTTTTTCCCAA-AGGTA 275 ********* ****** ************* ******** ************** ***** consensus_14657#0 TCCTGT-AGTCTTTC-GATGATGTTC-GGGTATCATCCTG-TAGTCAATCTTTCAGT-GT 1304 consensus_14657#3 TCCTGTTAGTCTTTCAGATGATGTTCTGGGTATCATCCTNGTAGTCAATCTTTCAGTTGT 296 consensus_14657#2 TCCTGT-AGTCTTTC-GATGATGTTC-GGGTATCATCCTG-TAGTCAATCTTTCAGT-GT 318 consensus_14657#1 TCCTGT-AGTCTTTC-GATGATGTTC-GGGTATCATCCTG-TAGTCAATCTTTCAGG-GT 330 ****** ******** ********** ************ *************** ** consensus_14657#0 TGGTTATC-AGCTGCTGGCGAG--TTTTGCTTGTTTCTCA-ATGGTCG-ATGAATG-CTG 1358 consensus_14657#3 TGGTTATCGAGCTGCTGGCGATGTTTTTGCTTATTTCTCAGATGGTCGCATGAATGGCTG 356 consensus_14657#2 TGGTTATC-AGCTGCTGGCGAG--TTTTGCTTGTTTCTCA-ATGGTCG-ATGAATG-CTG 372 consensus_14657#1 TGGTTATC-ACCTGCTGGCCAG--TTTTGCTTGTTTCTCA-CGGGTCG-ATGAATG-CTG 384 ******** * ******** * ******** ******* ***** ******* *** consensus_14657#0 A-GCATGCCTC-TATGTTCATGCCC-GTCGTATTTACCT-GATGTTATTAAATTCATGCC 1414 consensus_14657#3 ATGCATGCCTCGTATGTTCATGCCCTGTCGTATTTACCTTGATGTTATTAAATTCATGCC 416 consensus_14657#2 A-GCATGCCTC-TATGTTCATGCCC-GTCGTATTTACCT-GATGTTATTAAATTCATGCC 428 consensus_14657#1 A-ACATGCCTC-TATGTTCCTGCCC-GCCGTATTTACCT-GATGCTATAAAATCC-TGCC 439 * ******** ******* ***** * *********** **** *** **** * **** consensus_14657#0 TCTA-TGCTGAGCAATCCCCTATGTTATTA-AATTGTTCATTCAATTTGTGCAGTTTTCT 1472 consensus_14657#3 TCTAGTGCTGAGCAAAAAAAAAAAAAAAAA-ACA-------------------------- 449 consensus_14657#2 TCTA-TGCTGAGCAAAAAAAAAAAAAAAAA-ACA-------------------------- 460 consensus_14657#1 TCTA-TGCTGAGNCATCCCCTATGTTTTTACACCTACCCACCGCCCTCTGTCTGCCTGCG 498 **** ******* * * * * consensus_14657#0 TCAAAAAAAAA------------------------------------------------- 1483 consensus_14657#3 ------------------------------------------------------------ consensus_14657#2 ------------------------------------------------------------ consensus_14657#1 ACTCCGTTGTCCACCCTCGGGGCCGNNCCGGGACCCGCGTCCGCCCTGTGCGGGACGTGC 558 consensus_14657#0 -------------------------------------- consensus_14657#3 -------------------------------------- consensus_14657#2 -------------------------------------- consensus_14657#1 TTCCGCCGCGTCGCGCGTCGCCGTTCCCCCCTCGTTGC 596 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||