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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1170 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGATTTTGCTTTGCTTTCTTTGCTTTCCTCTCCTCTCTCGCCGCCCACCTCGCCGTCGCCGCCGCCGCGAGGGCCAACGCCGGCGAAGTCCGCGAGCCGAAGCATCACACAGCTGCGCCAGCGA-TGTCGGTGGAGACGGAGCGGAGCTCCAC-GGAGTCGTCCGCCGCGTCGGGGCTCGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCGGGCTCCCTCGCCGCCGCCGCCGCACCTGACCCCGACCGCAAGCGCTCCTCCCCCTCCTCCTCCGACGCCGCCGACGCCGCAGACAACTCCTCCCCCCTCGCCGCCGCCGCCGATGCTCCCCCTGCTCCCAAGGCGAGGGTGGTGGGGTGGCCGCCGGTGAGGTCGTTCAGGAAGAACGCGCTGGCGGCCAAG-TTCGTGAAGGTGGCCGT-GGACGGCGCGCCG-TACCTGCGCAAGGTGGACCTCG-AGGCCTACTCCGGCTACGACCAGCTCCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCCGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACG-CGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACA-AGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGG-TTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACA-TGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATA-TATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAG-ACCATATACGCAAAAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGTTTTTTGTCGCACCATAGGCGATGGACATCTCTGGCCTTATACTTTCGTAAAAATCTTATCATGTTAAGCGATGGTCTTGCTTTGGAGTTCAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK109373 [TTCCTCGAGCACTGTTGGCCTACTGGATTTTGCTTTGCTTTCTTTGCTTTCCTCTCCTCTCTCGCCGCCCACCTCGCCGTCGCCGCCGCCGCGAGGGCCAACGCCGGCGAAGTCCGCGAGCCGAAGCATCACACAGCTGCGCCAGCGA TGTCGGTGGAGACGGAGCGGAGCTCCAC GGAGTCGTCCGCCGCGTCGGGGCTCGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCGGGCTCCCTCGCCGCCGCCGCCGCACCTGACCCCGACCGCAAGCGCTCCTCCCCCTCCTCCTCCGACGCCGCCGACGCCGCAGACAACTCCTCCCCCCTCGCCGCCGCCGCCGATGCTCCCCCTGCTCCCAAGGCGAGGGTGGTGGGGTGGCCGCCGGTGAGGTCGTTCAGGAAGAACGCGCTGGCGGCCAAG TTCGTGAAGGTGGCCGT GGACGGCGCGCCG TACCTGCGCAAGGTGGACCTCG AGGCCTACTCCGGCTACGACCAGCTCCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCCGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACG CGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACA AGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGTTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGG TTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACA TGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATA TATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAG ACCATATACGCAAAAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGTTTTTTGTCGCACCATAGGCGATGGACATCTCTGGCCTTATACTTTCGTAAAAATCTTATCATGTTAAGCGATGGTCTTGCTTTGGAGTTCAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK100800 [ TTTGCTTTCTTTGCTTTCCTCTCCTCTCTCGCCGCCCACCTCGCCGTCGCCGCCGCCGCGAGGGCCAACGCCGGCGAAGTCCGCGAGCCGAAGCATCACACAGCTGCGCCAGCGA TGTCGGTGGAGACGGAGCGGAGCTCCAC GGAGTCGTCCGCCGCGTCGGGGCTCGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCGGGCTCCCTCGCCGCCGCCGCCGCACCTGACCCCGACCGCAAGCGCTCCTCCCCCTCCTCCTCCGACGCCGCCGACGCCGCAGACAACTCCTCCCCCCTCGCCGCCGCCGCCGATGCTCCCCCTGCTCCCAAGGCGAGGGTGGTGGGGTGGCCGCCGGTGAGGTCGTTCAGGAAGAACGCGCTGGCGGCCAAG TTCGTGAAGGTGGCCGT GGACGGCGCGCCG TACCTGCGCAAGGTGGACCTCG AGGCCTACTCCGGCTACGACCAGCTCCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCCGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACG CGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACA AGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGG TTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACA TGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATA TATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAG ACCATATACGCAAAAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGTTTTTTGTCGCACCATAGGCGATGGACATCTCTGGCCTT ]
[+] EMBL AK060091 [ TGCTTTCTTTGCTTTCCTCTCCTCTCTCGCCGCCCACCTCGCCGTCGCCGCCGCCGCGAGGGCCAACGCCGGCGAAGTCCGCGAGCCGAAGCATCACACAGCTGCGCCAGCGA TGTCGGTGGAGACGGAGCGGAGCTCCAC GGAGTCGTCCGCCGCGTCGGGGCTCGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCGGGCTCCCTCGCCGCCGCCGCCGCACCTGACCCCGACCGCAAGCGCTCCTCCCCCTCCTCCTCCGACGCCGCCGACGCCGCAGACAACTCCTCCCCCCTCGCCGCCGCCGCCGATGCTCCCCCTGCTCCCAAGGCGAGGGTGGTGGGGTGGCCGCCGGTGAGGTCGTTCAGGAAGAACGCGCTGGCGGCCAAG TTCGTGAAGGTGGCCGT GGACGGCGCGCCG TACCTGCGCAAGGTGGACCTCG AGGCCTACTCCGGCTACGACCAGCTCCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCCGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACG CGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACA AGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGG TTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACA TGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATA TATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAG ACCATATACGCAAAAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGTTTTTTGTCGCACCATA ]
[+] EMBL AK069242 [ TTGCTTTCCTCTCCTCTCTCGCCGCCCACCTCGCCGTCGCCGCCGCCGCGAGGGCCAACGCCGGCGAAGTCCGCGAGCCGAAGCATCACACAGCTGCGCCAGCGA TGTCGGTGGAGACGGAGCGGAGCTCCAC GGAGTCGTCCGCCGCGTCGGGGCTCGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCGGGCTCCCTCGCCGCCGCCGCCGCACCTGACCCCGACCGCAAGCGCTCCTCCCCCTCCTCCTCCGACGCCGCCGACGCCGCAGACAACTCCTCCCCCCTCGCCGCCGCCGCCGATGCTCCCCCTGCTCCCAAGGCGAGGGTGGTGGGGTGGCCGCCGGTGAGGTCGTTCAGGAAGAACGCGCTGGCGGCCAAG TTCGTGAAGGTGGCCGT GGACGGCGCGCCG TACCTGCGCAAGGTGGACCTCG AGGCCTACTCCGGCTACGACCAGCTCCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCCGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACG CGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACA AGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGG TTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACA TGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATA TATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAG ACCATATACGCAAAAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGTTTTTTGTCGCACCATAGGCGATGGACATCTCTGGCCTTATACTTTCGTAAAAATCTTAT ]
[+] EMBL AU091305 [ CTCCTCTCTCGCCGCCCACCTCGCCGTCGCCGCCGCCGCGAGGGCCAACGCCGGCGAAGTCCGCGAGCCGAAGCATCACACAGCTGCGCCA CGATTGTCGGTGGAGACGGAGCGGA CT CACNGGAGTCGTCCGCCGCGTCGGGGCTCGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCGGGCTCCCTCGCCGCCGCCGCCGCACCTGACCCCGACCGCAAGCGCTCCTNCCCCTCCTCCTCCGACGCCGCCGACGCCGCAGACAANTCCT ]
[+] EMBL AU091288 [ CCTCTCTCGCCGCCCACCTCGCCGTCGCCGCCGCCGCGAGGGCCAACGCCGGCGAAGTCCGCGAGCCGAAGCATCACACAGCTGCGCCA CGATTGTCGGTGGAGACGGAGCGGA NTCANC GGAGTCGTCCGCCGCGTCGGGGCTCGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCGGGCTCCCTCGCCGCCGCCGCCGCACCTGACCCCGACCGCAAGCGCTCCTCCCCCTCCTCCTCCGACGCCGCCGACGC ]
[+] EMBL AU091469 [ CGCCCACNTCGCCGTCGCCGCCGCCGCGAGGGCCAACGCCGGCGAAGTCCGCGAGCCGAAGCATCACACAGCTGCGCCAGCGA TGTCGGTGGAGACGGAGCGGA CT CAC GGAGTCGTCCGCCGCGTCGGGGCTCGACTTCGAGGACACCGCCCTCACCCNCCGCCTCCCGGGCTCCCTCGCCGCCGCCGCCGCACCTNACCCCGACCGCAAGCGCTCCTCCCCCTCCTCCTCCGACGCCGCCGACGCCGCAGACAACTCCTCCCCCCTCGNCGCCGCCGCCGATGCTCCCCCTGCTCCCAAGGCGAGGGTGGTGGGGTGGCCGCCGGTGAGGTCGTTCAGGAAGAACGCGCTGGCGGCCAAGTTTCGTGAAGGTTGCCGTGGGAAGGCGCGCCGTTACCTGCGCAAAGTGGAACTTGAAGGCCTAatt ]
[+] EMBL BI797970 [ tGCCGT GGACGGCGTCCCG TACCTGCGCAAGGTGGACCTCG AGGCCTACTCCGGCTACGACCAGCTCCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCCGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACG CGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACA AGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGCTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCATGTGTGATATGAACA TGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGGTGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATACTATAGATAATGAAGCACTGAAGCTTGAAATATAaaaaaaa ]
[+] EMBL BQ908886 [ CTCG AGGCCTACTCCGGCTACGACCAGCTCCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCACTTCACCATCCGGAAGTTCGCCGACGACGAGAGGAAGCTGGTGGACGCCGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACACAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGG TTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCATGTGTGATATGAACACTGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGGTGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATA TATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATGAG ACCATATACGCAAAAA ]
[-] EMBL CB667329 [ CGCCCACGACGAGAGGAAGCTGGTCGACG CGGTGATCGGGACGGAGTTCGTGCCGACGTTCGAGGACA AGGCCGGCGACTGGTTGCTCTTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGTCCGTGTGG TTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACA TGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATA TATAGATAATGAAGCGCTGAAGCTTGAAATATACACCTCCGGTTTGTCTCTTTATGAATAAGCTCCATATGCGCAAAAAAAaga ]
[+] EMBL AU091289 [ aA AGGACGGCGACTGGATGCTCGTCGGCGACGTCCCNTGGAAGATGTTTGTGGAAACTTGCCAGCG CTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGG TTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACA TGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATA TATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAG ACCATATACGCAAAAAAAaaaaaaaaa ]
consensusID : consensus_14664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[AGTTCTTCTCCCACTTCACCCATCCCGGAAGTTCGCCCGACGACGAGAGGAAGCTGGTNGACCCGGTGAACGGGACGGNGTACGTGCCGACGTACGAGGACAAGGNCGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCTTCGTCTNATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAGACCATATACGCAAAAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGTTTTTTGTCGCACCATAGGCGATGGACATCTCTGGCCTTATACTTTCGTAAAAATCTTATCATGTTAAGNGAAAAAAAAAAA]
[+] EMBL AU056493 [AGTTCTTCTCCCACTTCACCCATCCCGGAAGTTCGCCCGACGACGAGAGGAAGCTGGTNGACCCGGTGAACGGGACGGNGTACGTGCCGACGTACGAGGACAAGGNCGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCTTCGTCTNATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAGACCATATACGCAAAAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGTTTTTTGTCGCACCATAGGCGATGGACATCTCTGGCCTTATACTTTCGTAAAAATCTTATCATGTTAAGNGAAAAAAAAAAA]
consensusID : consensus_14664#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 539 fasta sequence
[TTGACCTATGGGCTGTGCTATGAGGCGTCGANCCTTCTTGACCCTTCTAGCTAAATTNCGTTTGATTAATTTTTGAGATTGTTTTTGNCCTACTTATTATGTTTCTTTATCTTACTTTTTGGTGAACTGCAACAGTTCTCATGAAACAGTAAATGGCACAAATGCTCTCTT-TTTATCTTCAGCAGTTTCTGACCTTAATGGTTGTGCAGGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAAAAAAA]
[+] EMBL C98051 [TTGACCTATGGGCTGTGCTATGAGGCGTCGANCCTTCTTGACCCTTCTAGCTAAATTNCGTTTGATTAATTTTTGAGATTGTTTTTGNCCTACTTATTATGTTTCTTTATCTTACTTTTTGGTGAACTGCAACAGTTCTCATGAAACAGTAAATGGCACAAATGCTCTCTT TTTATCTTCAGCAGTTTCTGACCTTAATGGTTGTNCAGGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAAAAAAA]
[+] EMBL OS0470A [TTGACCTATGGGCTGTGCTATGAGGCGTCGATCCTTCTTGATCCTTCTAGCTAAATTTCGTTTGATTAATTTTTGAGATTGTTTTTGTCCTACTTATTATGTTTCTTTATCTTACTTTTTGGTGAACTGCAACAGTTCTCATGAAACAGTAAATGGCACAAATGCTCTCTT TTTATCTTCAGCAGTTTCTGACCTTAATGGTTGTGCAGGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGTCGATGTTCGNCCACGTGTGATATGAACATGTACAGTTGTCTCCTACTACT ]
[+] EMBL BQ907537 [ CAACAGTTCTCATGAAACAGTAAATGGCACAAATGCTCTCTTGTTTATCTTCAGCAGTTTCTGACCTTAATGGTTGTGCAGGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACC AGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCATGTGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGGTGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTAaaaa ]
consensusID : consensus_14664#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence
[GAGAGGAAGCTGGTGGACNCGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTNGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGCNCTGAAGCTTGAAATATACACCTACAGTTTGTCTCTT--TNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTGCCCGTACCGACCGGTATCGTTGACAGAAGGGGCAA]
[+] EMBL AU223078 [GAGAGGAAGCTGGTGGACNCGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTNGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGCNCTGAAGCTTGAAATATACACCTACAGTTTGTCTCTT TNAAAAAAAAAAAAAA ]
[+] EMBL CF317918 [ GTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTGCCCGTACCGACCGGTATCGTTGACAGAAGGGGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14664#0 TTCCTCGAGCACTGTTGGCCTACTGGATTTTGCTTTGCTTTCTTTGCTTTCCTCTCCTCT 60
consensus_14664#1 ------------------------------------------------------------
consensus_14664#3 ------------------------------------------------------------
consensus_14664#2 ------------------------------------------------------------
consensus_14664#0 CTCGCCGCCCACCTCGCCGTCGCCGCCGCCGCGAGGGCCAACGCCGGCGAAGTCCGCGAG 120
consensus_14664#1 ------------------------------------------------------------
consensus_14664#3 ------------------------------------------------------------
consensus_14664#2 ------------------------------------------------------------
consensus_14664#0 CCGAAGCATCACACAGCTGCGCCAGCGATGTCGGTGGAGACGGAGCGGAGCTCCACGGAG 180
consensus_14664#1 ------------------------------------------------------------
consensus_14664#3 ------------------------------------------------------------
consensus_14664#2 ------------------------------------------------------------
consensus_14664#0 TCGTCCGCCGCGTCGGGGCTCGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCGGGC 240
consensus_14664#1 ------------------------------------------------------------
consensus_14664#3 ------------------------------------------------------------
consensus_14664#2 ------------------------------------------------------------
consensus_14664#0 TCCCTCGCCGCCGCCGCCGCACCTGACCCCGACCGCAAGCGCTCCTCCCCCTCCTCCTCC 300
consensus_14664#1 ------------------------------------------------------------
consensus_14664#3 ------------------------------------------------------------
consensus_14664#2 ------------------------------------------------------------
consensus_14664#0 GACGCCGCCGACGCCGCAGACAACTCCTCCCCCCTCGCCGCCGCCGCCGATGCTCCCCCT 360
consensus_14664#1 ------------------------------------------------------------
consensus_14664#3 ------------------------------------------------------------
consensus_14664#2 ------------------------------------------------------------
consensus_14664#0 GCTCCCAAGGCGAGGGTGGTGGGGTGGCCGCCGGTGAGGTCGTTCAGGAAGAACGCGCTG 420
consensus_14664#1 ------------------------------------------------------------
consensus_14664#3 ------------------------------------------------------------
consensus_14664#2 ------------------------------------------------------------
consensus_14664#0 GCGGCCAAGTTCGTGAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTC 480
consensus_14664#1 ------------------------------------------------------------
consensus_14664#3 ------------------------------------------------------------
consensus_14664#2 -----------------------------------------------------TTGACCT 7
consensus_14664#0 GAGGCCTACTCCGGCTACGACCAGCTCCTCCGCGCGCTCCAGGACAAGTTCTTCTCCCAC 540
consensus_14664#1 ----------------------------------------------AGTTCTTCTCCCAC 14
consensus_14664#3 ------------------------------------------------------------
consensus_14664#2 ATGGGCTGTGCTATGAGGCGTCGANCCTTCTTGACCCTTCTAGCTAAATTNCGTTTGATT 67
consensus_14664#0 TTCACCA--TCCGGAAGTTCGCC-GACGACGAGAGGAAGCTGGTGGACGC---GGTGAAC 594
consensus_14664#1 TTCACCCATCCCGGAAGTTCGCCCGACGACGAGAGGAAGCTGGTNGACCC---GGTGAAC 71
consensus_14664#3 ------------------------------GAGAGGAAGCTGGTGGACNC---GGTGAAC 27
consensus_14664#2 AATTTTTGAGATTGTTTTTGNCCTACTTATTATGTTTCTTTATCTTACTTTTTGGTGAAC 127
* * ** *******
consensus_14664#0 GG-GACGGAGTACGTGCCGACGTACGAGG-ACAAGGACGGCGACTGGATGCTCGTCGGC- 651
consensus_14664#1 GG-GACGGNGTACGTGCCGACGTACGAGG-ACAAGGNCGGCGACTGGATGCTCGTCGGC- 128
consensus_14664#3 GG-GACGGAGTACGTGCCGACGTACGAGG-ACAAGGACGGCGACTGGATGCTCGTCGGC- 84
consensus_14664#2 TGCAACAGTTCTCATGAAACAGTAAATGGCACAAATGCTCTCTTTTTATCTTCAGCAGTT 187
* ** * * ** *** ** **** * * ** ** * *
consensus_14664#0 ---GACGTC-----CCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGA 703
consensus_14664#1 ---GACGTC-----CCCTGGAAGATGTTTGTGGAAACTTGCCAGCGC-TTCGTCTNATGA 179
consensus_14664#3 ---GACGTC-----CCCTGGAAGATGTTTGTGGAAACTTGCCAGCGCCTTNGTCTCATGA 136
consensus_14664#2 TCTGACCTTAATGGTTGTGCAGGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGA 247
*** * ** * ************************* ** **** ****
consensus_14664#0 AAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCC 763
consensus_14664#1 AAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCC 239
consensus_14664#3 AAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCC 196
consensus_14664#2 AAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCC 307
************************************************************
consensus_14664#0 ATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACG 823
consensus_14664#1 ATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACG 299
consensus_14664#3 ATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACG 256
consensus_14664#2 ATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACG 367
************************************************************
consensus_14664#0 TGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTT 883
consensus_14664#1 TGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTT 359
consensus_14664#3 TGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTT 316
consensus_14664#2 TGTGATATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTT 427
************************************************************
consensus_14664#0 GAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGC 943
consensus_14664#1 GAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGC 419
consensus_14664#3 GAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGC 376
consensus_14664#2 GAGAAAAAGGTTGTAGTTTCGTTACTCGTCTGTAGTCTCTCCATATATAGATAATGAAGC 487
************************************************************
consensus_14664#0 ACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAGACCATATACGCAA 1003
consensus_14664#1 ACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAGACCATATACGCAA 479
consensus_14664#3 NCTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTNAAAAAAAAAAAAAAAAAAAAA 436
consensus_14664#2 ACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATAAAAAAAA-------- 539
************************************* ** ** * *
consensus_14664#0 AAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGT-----TTTT 1058
consensus_14664#1 AAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGT-----TTTT 534
consensus_14664#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAACCCT 496
consensus_14664#2 ------------------------------------------------------------
consensus_14664#0 TGTCGCACCATAGGCGATGGACATCTCTGGCCTTATACTTTCGTAAAAATCTTATCATGT 1118
consensus_14664#1 TGTCGCACCATAGGCGATGGACATCTCTGGCCTTATACTTTCGTAAAAATCTTATCATGT 594
consensus_14664#3 TGTCTGCCCGTAC-CGACCGGTATCGTTGACAGAAGGG----GCAA-------------- 537
consensus_14664#2 ------------------------------------------------------------
consensus_14664#0 TAAGCGATGGTCTTGCTTTGGAGTTCAAAAAAAAAAAAAAAAAAGGCCACAT 1170
consensus_14664#1 TAAGNGA-------------------AAAAAAAAAA---------------- 611
consensus_14664#3 ----------------------------------------------------
consensus_14664#2 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||