These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1845 fasta sequence [AAGAGA-GACTTTGGGGGAGGAAGAGAGAGCTTCTGTAGGTGTGATATTCTCTTTTGATCTTATCTGATCGCCGGTATTGAGCAAGGATTGGGGTTTGGGGTAAGGATAGCGAACACAAATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATCCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCAGACTCATTGAAGGAACTGTGGAGATTCCCAAACTCTTTCCCGAGTTAGATGGAACTAATTCCATCTGGGAACTCTTTACAGCTGTGCCTGTTGTTGTCACTGCCTACATTTGCCACTACAATGTACATAGCATCGACAATGAGTTGGAAGATAGAACTCAAACCAAGCCAATTGTGCAAACTTCACTGGCTCTCTGCTCAAGTGTGTACATTGCGACAAGCTTCTTTGCATATCTCCTCTTTGGCGAGGGTACCCTGGCTGATGTACTCGCCAACTTTGACTCCAACCTTCATATTCCATTCAGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTAGGCTCAATTTGGATGGACTGCTCTTCCCTACTGCAAGGCACATTTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATCTTGCTGCCATCTTCATACCGAGCATCTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGGCTCTATACAGCGATGCACTGAACATCATCTTTCACAGGAAAGTGGAGGCCTAAAACTCCATACTTCGAGCGACAAAGTGGAATGTACAGTTAGAATGATTTGGTGAGTTTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCATTGATTTTTATTCTGGACACCTGAAAGGATTTGATTTGCTGCATTTGTCTAGTTTCCTGAACATAAGCTGGTTCAACATTTAGAAGAGCCACTTGTGAATTGTGATATGGTTGCGGTTGTTTGTATCTATTCCGCCA-AAAAGAATTTTTCTTTTTGTTCTATACATGTTTATTCAATCATCCTGAAAATTTTAAGTGGATGACTTGAAAA-GGTTGTTTATATATACAATAATGCACATTGAAAC] [+] EMBL CB647288 [AAGAGAGGACTTTGGGGGAGGAAGAGAGAGCTTCTGTAGGTGTGATATTCTCTTTTGATCTTATCTGATCGCCGGTATTGAGCAAGGATTGGGGTTTGG GGATAGCGAACACAAATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATCCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGATGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTT ] [+] EMBL CB640913 [ GAGA GAGTTTGGGGGAGGAAGAGAGAGCTTCTGTAGGTGTGATATTCTCTTTTGATCTTATCTGATCGCCGGTATTGAGCAAGGATTGGGGTTTGGGGTAAGGATAGCGAACACAAATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATCCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCAGTCAGTGGGGGAGGATC ] [+] EMBL AK069748 [ TGTAGGTGTGATATTCTCTTTTGATCTTATCTGATCGCCGGTATTGAGCAAGGATTGGGGTTTGGGGTAAGGATAGCGAACACAAATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATCCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCAGACTCATTGAAGGAACTGTGGAGATTCCCAAACTCTTTCCCGAGTTAGATGGAACTAATTCCATCTGGGAACTCTTTACAGCTGTGCCTGTTGTTGTCACTGCCTACATTTGCCACTACAATGTACATAGCATCGACAATGAGTTGGAAGATAGAACTCAAACCAAGCCAATTGTGCAAACTTCACTGGCTCTCTGCTCAAGTGTGTACATTGCGACAAGCTTCTTTGCATATCTCCTCTTTGGCGAGGGTACCCTGGCTGATGTACTCGCCAACTTTGACTCCAACCTTCATATTCCATTCAGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTAGGCTCAATTTGGATGGACTGCTCTTCCCTACTGCAAGGCACATTTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATCTTGCTGCCATCTTCATACCGAGCATCTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGGCTCTATACAGCGATGCACTGAACATCATCTTTCACAGGAAAGTGGAGGCCTAAAACTCCATACTTCGAGCGACAAAGTGGAATGTACAGTTAGAATGATTTGGTGAGTTTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCATTGATTTTTATTCTGGACACCTGAAAGGATTTGATTTGCTGCATTTGTCTAGTTTCCTGAACATAAGCTGGTTCAACATTTAGAAGAGCCACTTGTGAATTGTGATATGGTTGCGGTTGTTTGTATCTATTCCGCCA AAAAGAATTTTT ] [+] EMBL CB672506 [ TCTTTTGATCTTATCTGATCGCCGGTATTGAGCAAGGATTGGGGTTTGGGGTAAGGATAGCGAACACAAATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATCCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCACACTCATTGAAGGAACTGTGGAGATTCCCAAACTCT ] [+] EMBL CB676833 [ TCTTCTCTTCTTATCTGATCGCCGGTATTGAGCAAGGATTGGGGTTTGG GGATAGCGAACACAAATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATCCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTATTGTTGTCATCACTGCTGGAATTGCGATTGTCACACTCATTG ] [+] EMBL CB677267 [ GATCCTATCTGATCGCCGGTATTGAGCAAGGATTGGGGTTTGGGGTAAGGATAGCGAACACAAATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATCCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGAGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCAGACTCATTGAACGAACTGTGGAGATTCCCAAACTCTTTCCCGAGTTAGATGGAACTAATTCCAT ] [+] EMBL CB652262 [ GATCGCCGGTATTGAGCAAGGATTGGGGTTTGGGGTAAGGATAGCGAACACAAATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACTAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATCCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGACGCATCCATTGACATGCTGGTCAGGTGCATCCACAAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGATGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCTAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCAGATGGTCTCCTTGCTACGACTCTTTATGAGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGACATACGCATCTGCACTGTCAGTTGCTCTTGCTGTGGATTTTGATGa ] [+] EMBL CB653433 [ TGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCAGACTCATTGAAGGAACTGTGGAGATTCCCAAACTCTTTCCCGAGTTAGATGGAACTAATTCCATCTGGGAACTCTTTACAGCTGTGCCTGTTGTTGTCACTGCCTACATTTGCCACTACAATGTACATAGCATCGACAATGAGTTGGAAGATAGAACTCAAACCAAGCCAATTGTGCAAACTTCACTGGCTCTCTGCTCAAGTGTGTACATTGCGACAAGCTTCTTTGCATATCTCCTCTTTGGCGAGGGTACCCTGGCTGATGTACTCGCCAACTTTGACTCCAACCTTCATATTCCATTCAGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTANGCTCAATTTGG ] [+] EMBL CB664576 [ GTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCAGACTCATTGAAGGAACTGTGGAGATTCCCAAACTCTTTCCCGAGTTAGATGGAACTAATTCCATCTGGGAACTCTTTACAGCTGTGCCTGTTGTTGTCACTGCCTACATTTGCCACTACAATGTACATAGCATCGACAATGAGTTGGAAGATAGAACTCAAACCAAGCCAATTGTGCAAACTTCACTGGCTCTCTGCTCAAGTGTGTACATTGCGACAAGCTTCTTTGCATATCTCCTCTTTGGCGAGGGTACCCTGGCTGATGTACTCGCCAACTTTGACTCCAACCTTCATATTCCATTCAGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTANGCTCAATTTGGATGGACTGCTC ] [+] EMBL CB664611 [ GTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCAGACTCATTGAAGGAACTGTGGAGATTCCCAAACTCTTTCCCGAGTTAGATGGAACTAATTCCATCTGGGAACTCTTTACAGCTGTGCCTGTTGTTGTCACTGCCTACATTTGCCACTACAATGTACATAGCATCGACAATGAGTTGGAAGATAGAACTCAAACCAAGCCAATTGTGCAAACTTCACTGGCTCTCTGCTCAAGTGTGTACATTGCGACAAGCTTCTTTGCATATCTCCTCTTTGGCGAGGGTACCCTGGCTGATGTACTCGCCAACTTTGACTCCAACCTTCATATTCCATTCAGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTT ] [-] EMBL CB653434 [ GCATCGACAATGAGTGGGAAGATAGAACTCAAACCAAGCCAATTGTGCAAACTTCACTGGCTCTCTGCTCAAGTGTGTACATTGCGACAAGCTTCTTTGCATATCTCCTCTTTGGCGAGGGTACCCTGGCTGATGTACTCGCCAACTTTGACTCCAACCTTCATATTCCATTCAGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTAGGCTCAATTTGGATGGACTGCTCTTCCCTACTGCAAGGCACATTTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATCTTGCTGCCATCTTCATACCGAGCATCTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGGCTCTATACAGCGATGCACTGAACATCATCTTTCACAGGAAAGTGGAGGCCTAAAACTCCATACTTCGAGCGACAAAGTGGAATGTACAGTTAGAATGATTTGGTGAGTTTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCATTGATTTTTATTCTGGACACCTGAAAGGATTTGATTTGCTGCATTTGTCTAGTTTCCTGAACATAAGCTGGTTCAACATTTAGAAGAGCCACTTGTGAATTGTGATATGGTTGCGGTTGTTg ] [-] EMBL CB647289 [ AGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTAGGCTCAATTTGGATGGACTGCTCTTCCCTACTGCAAGGCACATTTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATCTTGCTGCCATCTTCATACCGAGCATCTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGGCTCTATACAGCGATGCACTGAACATCATCTTTCACAGGAAAGTGGAGGCCTAAAACTCCATACTTCGAGCGACAAAGTGGAATGTACAGTTAGAATGATTTGGTGAGTTTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCATTGATTTTTATTCTGGACACCTGAAAGGATTTGATTTGCTGCATTTGTCTAGTTTCCTGAACATAAGCTGGTTCAACATTTAGAAGAGCCACTTGTGAATTGTGATATGGTTGCGGTTGTTTGTATCTATTCCGCCA AAAAGAATTTTTCTTTTTGTTCTATACATGTTTATTCAATCATCCTGAAAATTTTAAGTGGATGACTTGAAAA GGTTGTTTATATATACAATAATGCACATTGAAAC] [-] EMBL CB664577 [ AGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTAGGCTCAATTTGGATGGACTGCTCTTCCCTACTGCAAGGCACATTTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATCTTGCTGCCATCTTCATACCGAGCATCTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGGCTCTATACAGCGATGCACTGAACATCATCTTTCACAGGAAAGTGGAGGCCTAAAACTCCATACTTCGAGCGACAAAGTGGAATGTACAGTTAGAATGATTTGGTGAGTTTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCATTGATTTTTATTCTGGACACCTGAAAGGATTTGATTTGCTGCATTTGTCTAGTTTCCTGAACATAAGCTGGTTCAACATTTAGAAGAGCCACTTGTGAATTGTGATATGGTTGCGGTTGTTTGTATCTATTCCGCCA AAAAGAATTTTTCTTTTTGTTCTATACATGTTTATTCAATCATCCTGAAAATTTTAAGTGGATGACTTGAAAATGGTGGGTTATATATACAATAATGCAC ] [-] EMBL CB664612 [ GTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTAGGCTCAATTTGGATGGACTGCTCTTCCCTACTGCAAGGCACATTTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATCTTGCTGCCATCTTCATACCGAGCATTTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGGCTCTATACAGCGATGCACTGAACATCATCTTTCCCAGGAAAGTGGAGGCCTAAAACTCCATACTTCGAGCGACAAAGTGGAATGTACAGTTAGAATGATTTGGTGAGTTTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCATTGATTTTTATTCTGGACACCTGAAAGGATTTGATTTGCTGCATTTGTCTAGTTTCCTGAACATAAGGTGGTTCACCATTTAGAAGAGCCACTTGTGAATTGTGATATGGTTGCGGTTGTTTGTATCTATTCCGCCA AAAAGAATTTTTCTTTTTGTTGTATACATGTTTATTCAATCATCCTGAAAATTTTAAGTGGATGACTTGAAAACGGTTGTTTATATATACAATAATGCcc ] [-] EMBL CB663917 [ GGACTGCTCTTCCCTACTGCAAGGCACATTTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATGTTGCTGCCATCTTCATACCGAGCATCTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGGCTCTATACAGCGATGCACTGAACATCATCTTTCACAGGAAAGTGGAGGCCTAAAACTCCATACTTCGAGCGACAAAGTGGAATGTACAGTTAGAATGATTTGGTGAGTTTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCATTGATTTTTATTATGGACACCTGAAAGGATTTGATTTGCTGCATTTGTCTAGTTTCCTGAACATAAGCTGGTTCAACATTTAGAAGAGCCACTTGTGAATTGTGATATGGTTGCGGTTGTTTGTATTTATTCCGCCATGAAAGAATTTTTCT ] consensusID : consensus_14667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [ATGGATCACCAAGTGCCAGCAGGCATGTGTCACCCAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATTCATGAGTTCAATGGAGCTTCTTTNTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCATTAAGCGTTTGGGTAGGTGAATTCCACATTGTAATATGAGGTTCACTGTGCTAACTACTGTTTACGGTTAACTCATACTAATAAAACATCTTTGGTTTATAGATTCATTGAGATACATAAAAAAAA] [-] EMBL CA763668 [ATGGATCACCAAGTGCCAGCAGGCATGTGTCACCCAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATTCATGAGTTCAATGGAGCTTCTTTNTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCATTAAGCGTTTGGGTAGGTGAATTCCACATTGTAATATGAGGTTCACTGTGCTAACTACTGTTTACGGTTAACTCATACTAATAAAACATCTTTGGTTTATAGATTCATTGAGATACATAAAAAAAA] consensusID : consensus_14667#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [GGGAGTCAATATCTTCAGAGAGCCTTATTGGAAATGCATACCAAGCGCGACAAGAGTGTTGTGGCCTTTAACCATGATGTGGTGCTTTGCGGTGCTTCTCAAATTTCTGTGGCTCTATACAGCGATGCAACTGAACATCAGTCTTTCACAGGAAAGTGGAGGCCTAAAACTCCCATACTTCGAGCGACAAAGTGGAATGTACACGTTAGAAGTGATTTGGGTGAGTTGTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCACTTGATTTGTTATTCTGGACACCTGAAAGGATTTGATTGCTGCATTTGTCTAGTTTCCTGAACATAAGCTGGTTCAACATTTAGAAGAGCCACTTGTGAATTGTGATATGGTTCCGGTTGTTTGTATCTATTC] [+] EMBL BI810157 [GGGAGTCAATATCTTCAGAGAGCCTTATTGGAAATGCATACCAAGCGCGACAAGAGTGTTGTGGCCTTTAACCATGATGTGGTGCTTTGCGGTGCTTCTCAAATTTCTGTGGCTCTATACAGCGATGCAACTGAACATCAGTCTTTCACAGGAAAGTGGAGGCCTAAAACTCCCATACTTCGAGCGACAAAGTGGAATGTACACGTTAGAAGTGATTTGGGTGAGTTGTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCACTTGATTTGTTATTCTGGACACCTGAAAGGATTTGATTGCTGCATTTGTCTAGTTTCCTGAACATAAGCTGGTTCAACATTTAGAAGAGCCACTTGTGAATTGTGATATGGTTCCGGTTGTTTGTATCTATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14667#0 AAGAGAGACTTTGGGGGAGGAAGAGAGAGCTTCTGTAGGTGTGATATTCTCTTTTGATCT 60 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 TATCTGATCGCCGGTATTGAGCAAGGATTGGGGTTTGGGGTAAGGATAGCGAACACAAAT 120 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 GGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGA 180 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 TGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATCCATGAGTTCAATGG 240 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 AGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTAT 300 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 GGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCT 360 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 TGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAA 420 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 GATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCT 480 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 GCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGG 540 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 TGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTG 600 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 GTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGT 660 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 GTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTC 720 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 AGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCAGACTCAT 780 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 TGAAGGAACTGTGGAGATTCCCAAACTCTTTCCCGAGTTAGATGGAACTAATTCCATCTG 840 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 GGAACTCTTTACAGCTGTGCCTGTTGTTGTCACTGCCTACATTTGCCACTACAATGTACA 900 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 TAGCATCGACAATGAGTTGGAAGATAGAACTCAAACCAAGCCAATTGTGCAAACTTCACT 960 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 GGCTCTCTGCTCAAGTGTGTACATTGCGACAAGCTTCTTTGCATATCTCCTCTTTGGCGA 1020 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 GGGTACCCTGGCTGATGTACTCGCCAACTTTGACTCCAACCTTCATATTCCATTCAGCTC 1080 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 TGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCAT 1140 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 AGTCTTCTTCGCCCTTAGGCTCAATTTGGATGGACTGCTCTTCCCTACTGCAAGGCACAT 1200 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ------------------------------------------------------------ consensus_14667#0 TTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATCT 1260 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 -------------------------------------------------------ATGGA 5 consensus_14667#0 TGCTGCCATCTTCATACCGAGCATCTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGC 1320 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 TCACCAAGTGCCAGCAGGCATGTGTCACCCAAGGAAATACGAGATGAGACCACACCGCTT 65 consensus_14667#0 TGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTAT-GGA-ATT 1378 consensus_14667#2 ------------------------GGGAGTCAATATCTTCAGAGAGCCTTATTGGA-AAT 35 consensus_14667#1 CTCCCAATTAAGGAAGAGGAGGAGGGGATTCATGAGTTCAATGGAGCTTCTTTNTCCGGT 125 * * * * * ** * * * * consensus_14667#0 GCA--ACCAAGCGCGACAA-GA---TTTTGGCCTT-AACCATGATT--GTGCTT-GCGGT 1428 consensus_14667#2 GCA-TACCAAGCGCGACAA-GAGTGTTGTGGCCTTTAACCATGATGTGGTGCTTTGCGGT 93 consensus_14667#1 GCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGA-ATTATG--GCACTG-CCAGC 181 *** * * *** ** * *** ** ** * ** * * consensus_14667#0 GCT-CTCAAATT-CTGTGGCTCTATACAGCGATGCA-CTGAACATCA-TCTTTCACAGGA 1484 consensus_14667#2 GCTTCTCAAATTTCTGTGGCTCTATACAGCGATGCAACTGAACATCAGTCTTTCACAGGA 153 consensus_14667#1 GAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCT 241 * **** * *** * * * * ** * *** **** * * * * consensus_14667#0 AAGTGGAGGCC----TAAAACTCC-AT-ACTTCGAGCGACAAAGTGGAATGTACA-GTTA 1537 consensus_14667#2 AAGTGGAGGCC----TAAAACTCCCAT-ACTTCGAGCGACAAAGTGGAATGTACACGTTA 208 consensus_14667#1 CACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTA 301 * ** * * * * * * * * *** ** * * * *** ** consensus_14667#0 GAA-TGATT--TGG-TGAG-TT-TAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCG 1591 consensus_14667#2 GAAGTGATT--TGGGTGAG-TTGTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCG 265 consensus_14667#1 CGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGG--AGGATCGCGCTGCAAGCATCT 359 ** * *** *** * * * *** ** * ** ** * ** consensus_14667#0 GTGGTAGCCA-TTGATTT-TTATTCTGGACACCTGAAAGGATTTGATTTGCTGCAT-TTG 1648 consensus_14667#2 GTGGTAGCCACTTGATTTGTTATTCTGGACACCTGAAAGGATTTGATT-GCTGCAT-TTG 323 consensus_14667#1 GTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTG 419 ** *** * ** ** ** * * * * * * ** * * ** consensus_14667#0 TCTAGTTTCCTGAACATAAGCTGGT--TCAACAT------TTAGAAGAGCCACTTG---- 1696 consensus_14667#2 TCTAGTTTCCTGAACATAAGCTGGT--TCAACAT------TTAGAAGAGCCACTTG---- 371 consensus_14667#1 TCCGGAA-CATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACC 478 ** * * * **** * ** * *** * * ** ** * * *** consensus_14667#0 TGAATTGTGATATGGT--TGCGGTTGTTTGTATCTATTCCGCCAAAAAGAATTTTTCTTT 1754 consensus_14667#2 TGAATTGTGATATGGT--TCCGGTTGTTTGTATCTATTC--------------------- 408 consensus_14667#1 TCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCC 538 * * ***** ** * * ******** * * * consensus_14667#0 TTGTTCTATACATGTTTATTCAATCATCCTGAAAATTTTAAGTGGATGACTTGAAAAGGT 1814 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 ATTGGTGAGCATTAAGCGTTTGGGTAGGTGAATTCCACATTGTAATATGAGGTTCACTGT 598 consensus_14667#0 TGTTTATATATACAATAATGCACATTGAAAC----------------------------- 1845 consensus_14667#2 ------------------------------------------------------------ consensus_14667#1 GCTAACTACTGTTTACGGTTAACTCATACTAATAAAACATCTTTGGTTTATAGATTCATT 658 consensus_14667#0 ----------------- consensus_14667#2 ----------------- consensus_14667#1 GAGATACATAAAAAAAA 675 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||