These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1931 fasta sequence [GATTTACAGCCACCCACACCACCAAGGCACCAACGCATCCATCCAAACCGCCGCCCGCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGG-CCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACA-TTTTTTTTGAAGAGAGATTCTGTATATAAAGGACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGGTACAGCAGTTACGGGGTTCTTTGTCATAGGTCATGATTGTGCCCACAAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAAGCATGACAGACATCATGCCAAGACAAACATGTTGATAGAAGATACTGCATG-GCAACCCGTTTTTTCAAAGGAGTTCAGAACAAATTCC-TTACTGAGGAAAGCAATGATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCACTGGTTAATTTGGCACTTTGATCTAAAAAAATTCAGACCAAATGAGCTCCCAAGGGTGAAAATAAGCTTAGCATCTGTGTTAGCGTTCATGGCAATTGGATGGCCACTGATTATTCTCAAATCAGGAATAGCTGGATGGTTCAAGTTCTGGTTCATG-CCATGGATGGTTTATCACTTTTGGATGAGCACC-TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC-GGCA-CAGTTCACTGTGA-CTATCCTC-GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG-AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA--TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTCTAATTCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB636012 [GATTTACAGCCACCCACACCACCAAGGCACCAACGCATCCATCCAAACCGCCGCCCGCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGG CCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTTCA TTTTTTTTtga ] [+] EMBL CB639562 [GATTTACAGCCACCCACACCACCAAGGCACCAACGCATCCATCCAAACCGCCGCCCGCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGG CCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACA TTTTTTTTGAAGAGAGATTCTGTATATAAAGGACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTA ] [+] EMBL CB631344 [ GCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGGCCCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACA TTTTTTTTGAAGAGAGATTCTGTATATAAAGAACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGGTACAGCAGTTACGGGGTTCTTTGTCATAGGTCATGATTGTGCCCACAAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAAGCATGACAGACATCATGCCAAGACAAACATGTTGATAGAAGATACTGCATGNGC ACCCGTTTTTTCAAAGGAGTTCAGAACAAATTCCTTTACTGAGGAAAGC ATGATATTTGCTTATGGTCCTATCAGGCCATG ] [+] EMBL CB630701 [ GCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGGCCCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACA TTTTTTTTGAAGAGAGATTCTGTATATAAAGAACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGGTACAGCAGTTACGGGGTTCTTTGTCATAGGTCATGATTGTGCCCACAAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAAGCATGACAGACATCATGCCAAGACAAACATGTTGATAGAAGATACTGCATG GCA ] [+] EMBL CB651418 [ GCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGG CCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACATTTTTTTTTGAAGAGAGATTCTGTATATAAAGGACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGGTACAGCAGTTACGGGGTTCTTTGTCATAGGTCATGATTGTGCCCACAAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAAGCATGACAGACATCATGCCAAGACAAACATGTTGATAGAAGATACTGCATG GCAACCCGTTTTTTCAAAGGAGTTCAGAACAAATTCC TTACTGAGGAAAGCAA ] [-] EMBL BU572349 [ ACGGGGTTCTTTG CATAGGTCATGATTGTGGCCACCAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTG TGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATG ACCTTGGAGATTTAAGCATGACAGACATCATG CAAG CAAACATGTTGATAGAAGATACTGCATG GCAACCCGTTTTTTCAAAGGAGTTCAGAACAAATTCC TTACTGAGGAAAGCAATGATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCACTGGTTAATTTGGCACTTTGATCTAAAAAAATTCAGACCAAATGAGCTCCCAAGGGTGAAAATAAGCTTAGCATCTGTGTTAGCGTTCATGGCAATTGGATGGCCACTGATTATTCTCAAATCAGGAATAGCTGGATGGTTCAAGTTAAGGTTCATGCCCATGGATGGTTTATCACTTTTGGATGAGCACCTTTTACGAGGGTACCTCgggccgcga ] [+] EMBL AK060449 [ AATTCAGACCAAATGAGCTCCCAGGGGTGAAAATAAGCTTAGCATCTGTGCTAGCGTTCATGGCAATTGGATGGCCACTGATTATTCTCAAATCAGGAATAGCTGGATGGTTCAAGTTCTGGTTCATG CCATGGATGGTTTATCACTTTTGGATGAGCACC TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC GGCA CAGTTCACTGTGA CTATCCTC GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA AAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTCTAAT ] [-] EMBL CB630702 [ GCAATTGGATGGCCACTGATTATTCTCAAATCAGGAATAGCTGGATGGTTCAAGTTCTGGTTCATG CCATGGATGGTTTATCACTTTTGGATGAGCACC TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC GGCA CAGTTCACTGTGA CTATCCTC GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATCCCTTGGAGGCTTGGAATATAAATAGGGGCACGCTAGTGCTACAGCCATTTGCTNCTa ] [-] EMBL CB631345 [ AGCTGGATGGTTCAAGTTCTGGTTCATG CCATGGATGGTTTATCACTTTTGGATGAGCACC TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC GGCA CAGTTCACTGTGA CTATCCTC GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGA ] [-] EMBL CB651419 [ ATCACTTTTGGATGAGCACC TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC GGCA CAGTTCACTGTGA CTATCCTC GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTTTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTCT ] [+] EMBL AU076263 [ TGCACAGGCNCAATTAAACGGGCACCAGTTCACTGTGACCTATCCTCGGGTGGATAAAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCNAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAACCAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCNTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG ANCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCAaaaaaaa ] [-] EMBL CB636013 [ AACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCAa ] [+] EMBL BE230212 [ ATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATG ] [+] EMBL CB685798 [ ATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCA ] [+] EMBL AU029781 [ GTTACNCGGCTTCAGAACCGGTTCCCAAAAGTTCATTTAGAANAAAGGCTGTCAGAAGTTACCCTAAAAAATTTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTANACCTTGGAGGCTTGGAATATAAATATGGGCNCGCTAGTGCTANAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTCTAANTCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [AAAAAAAAAAAGAAAAAGAAGAAAAAAAAAAAAAAAAAAAAAACTCGAGACCAGCCTCGGGCCGAATTCGGCACGAGGCCGCCGCCCGCCGCCGCCCGGCGGAGTCGTCTTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGGCCCCGCTGCTACCAAAAAGGGCAATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGATCCCCTCCACGCGGCGGGTGGGAGGGTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGAAAGAACGCTTTCCCACGGAGAGCAACCGGCGGGGCCCCGGCAGGTACATTTTTTTTGAAAAGAGATTCTGTATATAAAGGAAAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCACCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGGGAGAAAATTATGGATTCAAACGAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGCATTTGAAATCGATGATCTAAAATCTGGGACTTCTGTTTTAATATCACCTACTTCTTA] [+] EMBL CB680429 [AAAAAAAAAAAGAAAAAGAAGAAAAAAAAAAAAAAAAAAAAAACTCGAGACCAGCCTCGGGCCGAATTCGGCACGAGGCCGCCGCCCGCCGCCGCCCGGCGGAGTCGTCTTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGGCCCCGCTGCTACCAAAAAGGGCAATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGATCCCCTCCACGCGGCGGGTGGGAGGGTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGAAAGAACGCTTTCCCACGGAGAGCAACCGGCGGGGCCCCGGCAGGTACATTTTTTTTGAAAAGAGATTCTGTATATAAAGGAAAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCACCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGGGAGAAAATTATGGATTCAAACGAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGCATTTGAAATCGATGATCTAAAATCTGGGACTTCTGTTTTAATATCACCTACTTCTTA] consensusID : consensus_14684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [CCTGNGCATGGACTGGGTACAGCAGTTACGGGGTTCTTTGTCATAGGGTCATGATTGTGCCACAAATCATTTTCGANGAATAACTGGGTGGAAGATATTGTTGGAACTCTANCTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAACATGACAGACATCATGCCAAGACAAACATGTTGATANAANATACTGCATGGCAACCCGTTTTTTCAAAGGANTTCAGAACAAATCCTNACTGANGAAAGCAATGATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCCTNGGTTAATTGGNCCTTTGATNTTAAAAAATTCAAACAAATGANCTCCCCCGGGTGAAAATAANCTTAACATCTGTGCTAACGTTCATGGCAATTGGATGGGCACTGATTATTCTCANATCANGAATAACTGGATGGTNCNAGTTCTGGTTCATGCCATGGATGGTTTATCACTTTTGGATGANCACCTTTACAATGGTACATCACACTGCTCCTCATTTTNCNTCCAAA] [+] EMBL BE228465 [CCTGNGCATGGACTGGGTACAGCAGTTACGGGGTTCTTTGTCATAGGGTCATGATTGTGCCACAAATCATTTTCGANGAATAACTGGGTGGAAGATATTGTTGGAACTCTANCTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAACATGACAGACATCATGCCAAGACAAACATGTTGATANAANATACTGCATGGCAACCCGTTTTTTCAAAGGANTTCAGAACAAATCCTNACTGANGAAAGCAATGATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCCTNGGTTAATTGGNCCTTTGATNTTAAAAAATTCAAACAAATGANCTCCCCCGGGTGAAAATAANCTTAACATCTGTGCTAACGTTCATGGCAATTGGATGGGCACTGATTATTCTCANATCANGAATAACTGGATGGTNCNAGTTCTGGTTCATGCCATGGATGGTTTATCACTTTTGGATGANCACCTTTACAATGGTACATCACACTGCTCCTCATTTTNCNTCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14684#0 GATTTACAGCCACCCACACCACCAAGGCACCAACGCATCCATCCAAACCGCCGCCCGCCG 60 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 CCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGC 120 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 CCGCCGGGCCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCC 180 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 CCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGC 240 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 CCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACATTTTT 300 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 TTTGAAGAGAGATTCTGTATATAAAGGACAGAGTTGTCATCAATTTTTACCATTGAAACA 360 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 AAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGA 420 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 AAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGA 480 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 TAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGA 540 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 TCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTT 600 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 -----------------------------------------AAAAAAAAAAAGAAAAAGA 19 consensus_14684#0 GATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGG-TACAGCAG 659 consensus_14684#2 -----------------------------------CCTGNGCATGGACTGGGTACAGCAG 25 consensus_14684#1 AGAAAAAAAAAAAAAAAAAAAAAACTCGAGACCAGCCTCGGGCCGAATTCGGCACGA-GG 78 *** * * * * * ** * consensus_14684#0 TTACGGGGTTCTTTGTCATAGG-TCATGATTGTGCCCACAAATCATTTTCGAGGAATAAG 718 consensus_14684#2 TTACGGGGTTCTTTGTCATAGGGTCATGATTGTGCC-ACAAATCATTTTCGANGAATAAC 84 consensus_14684#1 CCGCCGCCCGCCGCCGCCCGGCGGAGTCGTCTTCTCCACGCTCCCTCGCCACCGCGCGCC 138 * * * * * * * * * ** * * * * consensus_14684#0 CTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCT 778 consensus_14684#2 TGGGTGGAAGATATTGTTGGAACTCTANCTT-CTTGCCATTGATATACCCCTATGAACCT 143 consensus_14684#1 CTCCCGGCCTAGCCCGCCGGGCCCCGCTGCTACCAAAAAGGGCAATGGCGACGGCGAGCG 198 ** * * ** * * * * * * ** * * * consensus_14684#0 TGGAGATTTAAGCATGACAGACATCATGC-CAAGACAAACATGTTGATAGAAGATACTGC 837 consensus_14684#2 TGGAGATTTAA-CATGACAGACATCATGC-CAAGACAAACATGTTGATANAANATACTGC 201 consensus_14684#1 GCGTCTCCACTCCCCTGCAGATCCCCTCCACGCGGCGGGTGGGAGGGTGCTGCTCCCGCC 258 * * **** * * * * * * * * * * * consensus_14684#0 ATGGCAACCCGTTTTTTCAAAGGAG---TTCAGAACAAATTCCTTACTGAGGAAAGCAAT 894 consensus_14684#2 ATGGCAACCCGTTTTTTCAAAGGAN---TTCAGAACAAAT-CCTNACTGANGAAAGCAAT 257 consensus_14684#1 CCGGCAGCCCGGCCCCGGGAAAGAACGCTTTCCCACGGAG-AGCAACCGGCGGG-GCCCC 316 **** **** ** ** ** ** * ** * * ** consensus_14684#0 GATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCACTGGT-TAATTTGGC 953 consensus_14684#2 GATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCCTNGGT-TAATTGGNC 316 consensus_14684#1 GGCAGGTACATTTTTTTTGAAAAGAGATTCTGTATATAAAGGAAAGAGTTGTCATCAATT 376 * * * * * * * * ** * * * ** * * * * ** consensus_14684#0 ACTTTGATCTAAAAAAATTCAGACCAAATGAGCTCC---CAAGGGTGAAAATAAGCTTAG 1010 consensus_14684#2 -CTTTGATNTTAAAAAATTCAAAC-AAATGANCTCC---CCCGGGTGAAAATAANCTTAA 371 consensus_14684#1 TTTACCATTGAAACAAAGCGGAAGGTTGCAAGCACCAGTTCTGCCTGTTACTCCACCTTT 436 * ** ** *** * * * ** * ** * * * * consensus_14684#0 CATCTGTGTTAGCGTTCATGGCAATTGGATGGCCACTGATTATT--CTCAAATCAG---- 1064 consensus_14684#2 CATCTGTGCTAACGTTCATGGCAATTGGATGGGCACTGATTATT--CTCANATCAN---- 425 consensus_14684#1 GTTAGATGATGAAGAAAAACGGAAGCAAATGGGAGAAAATTATGGATTCAAACGAATTGG 496 * ** * * * * ** **** ***** *** * * consensus_14684#0 -GAATAGCTG---GATGGTTCAAGTTCTGGTTCATGCCATGGATGGTTTATC-------A 1113 consensus_14684#2 -GAATAACTG---GATGGTNCNAGTTCTGGTTCATGCCATGGATGGTTTATC-------A 474 consensus_14684#1 AGAACAGTTGCCAGATAATGTTA-CTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGG 555 *** * ** *** * * *** *** ****** ** * * consensus_14684#0 CTTTTGGA--TGAGCACCTTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAG 1171 consensus_14684#2 CTTTTGGA--TGANCACCTTTACAATGGTACATCACACTGCTCCTCATTTTNCNTCCAAA 532 consensus_14684#1 CATTTGAAATCGATGATCTAAAATCTGGGACTTCTGTTTTAATATCACCTACTTCTTA-- 613 * **** * ** * ** * *** ** ** * *** * * consensus_14684#0 ACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAACGGCACAGTTCACTGTGACTAT 1231 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 CCTCGGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCT 1291 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 CCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGC 1351 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 AAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGC 1411 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 CATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCC 1471 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 CAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGT 1531 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 TGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCT 1591 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 AACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACA 1651 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 CGGCTTCAGAGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTAT 1711 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 AAATTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAA 1771 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 TATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCA 1831 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 TTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTC 1891 consensus_14684#2 ------------------------------------------------------------ consensus_14684#1 ------------------------------------------------------------ consensus_14684#0 TAATTCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA 1931 consensus_14684#2 ---------------------------------------- consensus_14684#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||