These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 694 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC-GTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC-T-GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC-TCTACTCCTCTTTAGTTAACATATAAACAAAC-ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG-AAACG-ATTCC-TTGATCTTTTTC-AGATGATTCCCG-AGTAGTGCTT-CTATTTGTC-AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC-TGTC-ATGTATATATATGTACATAG-TTTTTGGTAT-CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC--T---CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG-GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTACAGTTGAATTTTGAGGGAATTCTTGCACTGACATCTTTTCATTCTCCAGTAATATTACTAGGATTGGCCCACTGTAGGCACATCGTTTT] [-] EMBL BP184750 [TTTTTTTTTTTTTTTTTTTTTTTTTTTG GGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC GTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC T GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTTTTTAGTTAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGNCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTACAGTTGAATTTTG ] [+] EMBL CA759416 [ TTTTTTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC GTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC T GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTCTTTAGTTAACATATAAACAAAC ACAAATGTACAAGATATGTCACACACGCGCGCCCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCGAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTACAGTTGAATTTTGAGGGAATTCTTGCACTGACATCTTTTCATTCTCCAGTAATATTACTAGGATTGGCCCACTGTAGGCACATCGTTTT] [-] EMBL AU094273 [ TTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC GTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC T GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTCTTTAGTTAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTc ] [-] EMBL AU094952 [ TTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC GTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC T GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTCTTTAGTTAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGT ] [-] EMBL AU094981 [ TTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC GTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC T GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTCTTTAGTTAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGNAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAG ] [-] EMBL AU094928 [ TTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC GTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC T GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTCTTTAGTTAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACCCTTNCCCCCACTCCAGGA TGCATTGAGCCAAA GGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTT ] [-] EMBL AU182917 [ TTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC GTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC TAGTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTCTTTAGTTAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGGGGTCATACATTTGGTGGAACTCCCTC ] [-] EMBL AU172879 [ TTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC GTCACACATTGCACAGCCATAGAAGCTTACAATGATACACTT GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTCTTTAGTTAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCG ] [-] EMBL AU183049 [ TTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAACAGTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC T GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTCTTTAGTTAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACT ] [-] EMBL AU222615 [ TTTTTGCAGGCAGGAAACCCATATATTTTCATATATTTCAGTTGAAGAAAC GTCACACATTGCACAGCCATAGAAGCTTACAATGATACAC T GTCCCAAACAGGGATCATTTCTTGGACTAAAACTCCAGAAATGTTTCACGTATTGACAC TCTACTCCTCTTTAGTTAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATTCC TTGATCTTTTTC ANATGATTCCCG AGTAGNGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGA ] [-] EMBL AU064952 [ CGTA TGACAC NCTAC CCCCCTTAGTT ACATATAAACAAAC ACAATTGT AAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACG ATCCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGNTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTA ] [-] EMBL AU064096 [ GACACNCCTACCCCCCTTTAGTAAACATATAANCAAACNCCAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGGAAAACG ATTCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTA ] [-] EMBL AU064580 [ ACAC TCTAC CCNCTTTAG TAACATATAAACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGGNAAACG ATNCCTTTGATCTTTTTC AGATGATTCCCG AGTAGTGCTTCCTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCCCNCGNGCNCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTA ] [-] EMBL AU065012 [ CATATAAACAAAC ACAANTGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGG AAACGAATCCC TTGATCTTTTTCAAGATGATTCCCGAAGTAGTGCTT CTATNTGTCAAGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGNTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTA ] [-] EMBL AU064730 [ CATATAACCAACN CCAATTGTAANAGATATGTCACACACGC CCCGCATTTGGCACAGGG AAACG A TCC TTGANCTTTTTC AGATGATTCCCG AGTAGTNC T CTATTTGTC AGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTA ] [-] EMBL AU064698 [ TAT AACAAAC ACAAATGTAAAAGATATGTCACACACGCGCGCGCATTTGGCACAGGN AAACG ATCCC TTGATCTTTTTC AGATGATTCCCG AGTAGTGCTT CTATTTGTCAAGTAAAGGGAAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATC TGTC ATGTATATATATGTACATAG TTTTTGGTAT CCTAGAGTTGTCACGACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCAACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTA ] [-] EMBL AU065135 [ GTAGGGCTT CTTTTTCCN AGT AAGGGAAACCT AACTTCCGANGATCTTTGTGGGCTGTCANTC TGTC ATGTATATATATG ACATAGTTTTTTGGTAT CCTAGAGGTGTCACAACTGCGAAACTGTGAGCCGGTGGTCATACATTTGGTGGAACTNCCTCGCATAACC T CCAGCTCCAGGATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCAGTTCAGTCTTAACCTCNACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTA ] [-] EMBL AU065101 [ TATTTNTC AGTAAAGGGNAACCTAAACTTCCGACGATCTTGATGGGCTGTCAATCTTGTCAATGTATATATATGTACATAG TTTTTGGTATCCCTAGAGTTTTAACAACTGCGAAACTGTGAGCCGGTGNTCATACATTTGGTGGAACTCCCTCGCATAACC T CCAGCTCCAGNATTGCATTGAGCCAAAGGGATCAGTTCGACCACGTCACCCATTTTAAGCTCTTG GTTCAAGTTGTGCACGACATGGCNGTTCAGTCTTAACCTCNACTGCATGTCATAGCTAGAAGTCCTCTTCAGTAGGTCCAGTA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||